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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccB1I | GGYRCC | 1 cut(s) | 636 |
| AccIII | TCCGGA | 1 cut(s) | 601 |
| AciI | CCGC | 3 cut(s) | 79, 313, 715 |
| AclI | AACGTT | 1 cut(s) | 264 |
| AclWI | GGATC | 1 cut(s) | 503 |
| AcsI | RAATTY | 1 cut(s) | 380 |
| AcyI | GRCGYC | 1 cut(s) | 637 |
| AdeI | CACNNNGTG | 1 cut(s) | 976 |
| AfiI | CCNNNNNNNGG | 3 cut(s) | 632, 633, 724 |
| AgsI | TTSAA | 1 cut(s) | 328 |
| AjiI | CACGTC | 1 cut(s) | 136 |
| AjuI | GAANNNNNNNTTGG | 2 cut(s) | 240, 272 |
| AluBI | AGCT | 6 cut(s) | 161, 514, 524, 813, 917, 968 |
| AluI | AGCT | 6 cut(s) | 161, 514, 524, 813, 917, 968 |
| Alw21I | GWGCWC | 3 cut(s) | 516, 861, 919 |
| Alw26I | GTCTC | 1 cut(s) | 244 |
| AlwI | GGATC | 1 cut(s) | 503 |
| Aor13HI | TCCGGA | 1 cut(s) | 601 |
| AoxI | GGCC | 1 cut(s) | 93 |
| ApeKI | GCWGC | 1 cut(s) | 179 |
| ApoI | RAATTY | 1 cut(s) | 380 |
| AspLEI | GCGC | 2 cut(s) | 639, 838 |
| AsuC2I | CCSGG | 1 cut(s) | 131 |
| AsuHPI | GGTGA | 2 cut(s) | 790, 925 |
| BanI | GGYRCC | 1 cut(s) | 636 |
| BanII | GRGCYC | 2 cut(s) | 516, 919 |
| BauI | CACGAG | 1 cut(s) | 918 |
| BbsI | GAAGAC | 1 cut(s) | 225 |
| Bbv12I | GWGCWC | 3 cut(s) | 516, 861, 919 |
| BbvI | GCAGC | 1 cut(s) | 191 |
| BccI | CCATC | 4 cut(s) | 92, 294, 448, 694 |
| BcgI | CGANNNNNNTGC | 2 cut(s) | 467, 501 |
| BciVI | GTATCC | 2 cut(s) | 658, 898 |
| BcnI | CCSGG | 1 cut(s) | 131 |
| BcoDI | GTCTC | 1 cut(s) | 244 |
| BfaI | CTAG | 1 cut(s) | 681 |
| BfoI | RGCGCY | 2 cut(s) | 640, 839 |
| BfuI | GTATCC | 2 cut(s) | 658, 898 |
| BglI | GCCNNNNNGGC | 1 cut(s) | 188 |
| BisI | GCNGC | 1 cut(s) | 180 |
| BlsI | GCNGC | 1 cut(s) | 181 |
| Bme1390I | CCNGG | 1 cut(s) | 131 |
| BmgBI | CACGTC | 1 cut(s) | 136 |
| BmiI | GGNNCC | 2 cut(s) | 638, 737 |
| BmrFI | CCNGG | 1 cut(s) | 131 |
| BmsI | GCATC | 3 cut(s) | 94, 394, 665 |
| BpiI | GAAGAC | 1 cut(s) | 225 |
| BpuEI | CTTGAG | 2 cut(s) | 74, 104 |
| BpuMI | CCSGG | 1 cut(s) | 131 |
| Bsa29I | ATCGAT | 1 cut(s) | 477 |
| BsaHI | GRCGYC | 1 cut(s) | 637 |
| BsaI | GGTCTC | 1 cut(s) | 244 |
| BsaJI | CCNNGG | 1 cut(s) | 582 |
| BsaWI | WCCGGW | 2 cut(s) | 601, 890 |
| Bsc4I | CCNNNNNNNGG | 3 cut(s) | 632, 633, 724 |
| Bse3DI | GCAATG | 1 cut(s) | 268 |
| BseAI | TCCGGA | 1 cut(s) | 601 |
| BseCI | ATCGAT | 1 cut(s) | 477 |
| BseDI | CCNNGG | 1 cut(s) | 582 |
| BseGI | GGATG | 2 cut(s) | 552, 680 |
| BseLI | CCNNNNNNNGG | 3 cut(s) | 632, 633, 724 |
| BseMI | GCAATG | 1 cut(s) | 268 |
| BseMII | CTCAG | 1 cut(s) | 846 |
| BseXI | GCAGC | 1 cut(s) | 191 |
| BshFI | GGCC | 1 cut(s) | 95 |
| BshNI | GGYRCC | 1 cut(s) | 636 |
| BshVI | ATCGAT | 1 cut(s) | 477 |
| BsiHKAI | GWGCWC | 3 cut(s) | 516, 861, 919 |
| BsiSI | CCGG | 3 cut(s) | 130, 602, 891 |
| BslFI | GGGAC | 1 cut(s) | 146 |
| BslI | CCNNNNNNNGG | 3 cut(s) | 632, 633, 724 |
| BsmAI | GTCTC | 1 cut(s) | 244 |
| BsmFI | GGGAC | 1 cut(s) | 146 |
| BsnI | GGCC | 1 cut(s) | 95 |
| Bso31I | GGTCTC | 1 cut(s) | 244 |
| Bsp1286I | GDGCHC | 3 cut(s) | 516, 861, 919 |
| Bsp13I | TCCGGA | 1 cut(s) | 601 |
| Bsp143I | GATC | 3 cut(s) | 154, 495, 988 |
| Bsp19I | CCATGG | 1 cut(s) | 582 |
| BspACI | CCGC | 3 cut(s) | 79, 313, 715 |
| BspANI | GGCC | 1 cut(s) | 95 |
| BspCNI | CTCAG | 1 cut(s) | 847 |
| BspDI | ATCGAT | 1 cut(s) | 477 |
| BspEI | TCCGGA | 1 cut(s) | 601 |
| BspHI | TCATGA | 1 cut(s) | 508 |
| BspLI | GGNNCC | 2 cut(s) | 638, 737 |
| BspPI | GGATC | 1 cut(s) | 503 |
| BspT107I | GGYRCC | 1 cut(s) | 636 |
| BspTNI | GGTCTC | 1 cut(s) | 244 |
| BsrDI | GCAATG | 1 cut(s) | 268 |
| BssECI | CCNNGG | 1 cut(s) | 582 |
| BssMI | GATC | 3 cut(s) | 154, 495, 988 |
| BssNI | GRCGYC | 1 cut(s) | 637 |
| BssSI | CACGAG | 1 cut(s) | 918 |
| BssT1I | CCWWGG | 1 cut(s) | 582 |
| Bst2BI | CACGAG | 1 cut(s) | 918 |
| Bst4CI | ACNGT | 2 cut(s) | 145, 653 |
| Bst6I | CTCTTC | 1 cut(s) | 736 |
| BstACI | GRCGYC | 1 cut(s) | 637 |
| BstC8I | GCNNGC | 1 cut(s) | 83 |
| BstDEI | CTNAG | 5 cut(s) | 184, 462, 659, 807, 855 |
| BstDSI | CCRYGG | 1 cut(s) | 582 |
| BstEII | GGTNACC | 1 cut(s) | 710 |
| BstF5I | GGATG | 2 cut(s) | 552, 680 |
| BstH2I | RGCGCY | 2 cut(s) | 640, 839 |
| BstHHI | GCGC | 2 cut(s) | 639, 838 |
| BstKTI | GATC | 3 cut(s) | 157, 498, 991 |
| BstMAI | GTCTC | 1 cut(s) | 244 |
| BstMBI | GATC | 3 cut(s) | 154, 495, 988 |
| BstMWI | GCNNNNNNNGC | 6 cut(s) | 167, 176, 188, 643, 833, 965 |
| BstPI | GGTNACC | 1 cut(s) | 710 |
| BstSCI | CCNGG | 1 cut(s) | 129 |
| BstV1I | GCAGC | 1 cut(s) | 191 |
| BstV2I | GAAGAC | 1 cut(s) | 225 |
| Bsu15I | ATCGAT | 1 cut(s) | 477 |
| BsuI | GTATCC | 2 cut(s) | 658, 898 |
| BsuRI | GGCC | 1 cut(s) | 95 |
| BsuTUI | ATCGAT | 1 cut(s) | 477 |
| BtgI | CCRYGG | 1 cut(s) | 582 |
| BtgZI | GCGATG | 1 cut(s) | 422 |
| BtrI | CACGTC | 1 cut(s) | 136 |
| BtsCI | GGATG | 2 cut(s) | 552, 680 |
| Cac8I | GCNNGC | 1 cut(s) | 83 |
| CciI | TCATGA | 1 cut(s) | 508 |
| CfoI | GCGC | 2 cut(s) | 639, 838 |
| ClaI | ATCGAT | 1 cut(s) | 477 |
| CseI | GACGC | 1 cut(s) | 833 |
| CviAII | CATG | 5 cut(s) | 208, 509, 545, 583, 785 |
| DdeI | CTNAG | 5 cut(s) | 184, 462, 659, 807, 855 |
| DinI | GGCGCC | 1 cut(s) | 638 |
| DpnI | GATC | 3 cut(s) | 156, 497, 990 |
| DpnII | GATC | 3 cut(s) | 154, 495, 988 |
| DraI | TTTAAA | 1 cut(s) | 832 |
| DraIII | CACNNNGTG | 1 cut(s) | 976 |
| Eam1104I | CTCTTC | 1 cut(s) | 736 |
| EarI | CTCTTC | 1 cut(s) | 736 |
| EciI | GGCGGA | 1 cut(s) | 68 |
| Ecl136II | GAGCTC | 2 cut(s) | 514, 917 |
| Eco130I | CCWWGG | 1 cut(s) | 582 |
| Eco24I | GRGCYC | 2 cut(s) | 516, 919 |
| Eco31I | GGTCTC | 1 cut(s) | 244 |
| Eco32I | GATATC | 1 cut(s) | 579 |
| Eco53kI | GAGCTC | 2 cut(s) | 514, 917 |
| Eco91I | GGTNACC | 1 cut(s) | 710 |
| EcoICRI | GAGCTC | 2 cut(s) | 514, 917 |
| EcoO65I | GGTNACC | 1 cut(s) | 710 |
| EcoRI | GAATTC | 1 cut(s) | 380 |
| EcoRV | GATATC | 1 cut(s) | 579 |
| EcoT14I | CCWWGG | 1 cut(s) | 582 |
| EcoT38I | GRGCYC | 2 cut(s) | 516, 919 |
| EgeI | GGCGCC | 1 cut(s) | 638 |
| EheI | GGCGCC | 1 cut(s) | 638 |
| ErhI | CCWWGG | 1 cut(s) | 582 |
| FaeI | CATG | 5 cut(s) | 211, 512, 548, 586, 788 |
| FaqI | GGGAC | 1 cut(s) | 146 |
| FatI | CATG | 5 cut(s) | 207, 508, 544, 582, 784 |
| Fnu4HI | GCNGC | 1 cut(s) | 180 |
| FokI | GGATG | 2 cut(s) | 539, 687 |
| FriOI | GRGCYC | 2 cut(s) | 516, 919 |
| Fsp4HI | GCNGC | 1 cut(s) | 180 |
| FspBI | CTAG | 1 cut(s) | 681 |
| GlaI | GCGC | 2 cut(s) | 638, 837 |
| GluI | GCNGC | 1 cut(s) | 180 |
| HaeII | RGCGCY | 2 cut(s) | 640, 839 |
| HaeIII | GGCC | 1 cut(s) | 95 |
| HapII | CCGG | 3 cut(s) | 130, 602, 891 |
| HgaI | GACGC | 1 cut(s) | 833 |
| HhaI | GCGC | 2 cut(s) | 639, 838 |
| Hin1I | GRCGYC | 1 cut(s) | 637 |
| Hin1II | CATG | 5 cut(s) | 211, 512, 548, 586, 788 |
| Hin6I | GCGC | 2 cut(s) | 637, 836 |
| HinP1I | GCGC | 2 cut(s) | 637, 836 |
| HindIII | AAGCTT | 1 cut(s) | 159 |
| HinfI | GANTC | 5 cut(s) | 102, 115, 424, 605, 851 |
| HpaII | CCGG | 3 cut(s) | 130, 602, 891 |
| HphI | GGTGA | 2 cut(s) | 790, 925 |
| Hpy166II | GTNNAC | 1 cut(s) | 749 |
| Hpy188I | TCNGA | 4 cut(s) | 52, 286, 352, 856 |
| Hpy188III | TCNNGA | 6 cut(s) | 71, 338, 509, 602, 920, 992 |
| Hpy8I | GTNNAC | 1 cut(s) | 749 |
| HpyAV | CCTTC | 2 cut(s) | 445, 701 |
| HpyCH4III | ACNGT | 2 cut(s) | 145, 653 |
| HpyCH4IV | ACGT | 3 cut(s) | 135, 264, 751 |
| HpyCH4V | TGCA | 5 cut(s) | 207, 273, 449, 488, 621 |
| HpyF10VI | GCNNNNNNNGC | 6 cut(s) | 167, 176, 188, 643, 833, 965 |
| HpyF3I | CTNAG | 5 cut(s) | 184, 462, 659, 807, 855 |
| HpySE526I | ACGT | 3 cut(s) | 135, 264, 751 |
| Hsp92I | GRCGYC | 1 cut(s) | 637 |
| Hsp92II | CATG | 5 cut(s) | 211, 512, 548, 586, 788 |
| HspAI | GCGC | 2 cut(s) | 637, 836 |
| KasI | GGCGCC | 1 cut(s) | 636 |
| Kpn2I | TCCGGA | 1 cut(s) | 601 |
| Kzo9I | GATC | 3 cut(s) | 154, 495, 988 |
| LmnI | GCTCC | 1 cut(s) | 521 |
| LpnPI | CCDG | 9 cut(s) | 23, 46, 95, 143, 290, 474, 615, 765, 904 |
| Lsp1109I | GCAGC | 1 cut(s) | 191 |
| LweI | GCATC | 3 cut(s) | 94, 394, 665 |
| MaeI | CTAG | 1 cut(s) | 681 |
| MaeII | ACGT | 3 cut(s) | 135, 264, 751 |
| MaeIII | GTNAC | 4 cut(s) | 5, 710, 796, 931 |
| MalI | GATC | 3 cut(s) | 156, 497, 990 |
| MboI | GATC | 3 cut(s) | 154, 495, 988 |
| MboII | GAAGA | 8 cut(s) | 230, 260, 433, 574, 753, 935, 998, 1007 |
| MfeI | CAATTG | 1 cut(s) | 42 |
| MhlI | GDGCHC | 3 cut(s) | 516, 861, 919 |
| MluCI | AATT | 7 cut(s) | 17, 42, 380, 466, 571, 610, 927 |
| Mly113I | GGCGCC | 1 cut(s) | 637 |
| MlyI | GAGTC | 1 cut(s) | 860 |
| MnlI | CCTC | 8 cut(s) | 181, 320, 626, 737, 757, 761, 787, 849 |
| MroI | TCCGGA | 1 cut(s) | 601 |
| MseI | TTAA | 3 cut(s) | 366, 374, 831 |
| MslI | CAYNNNNRTG | 3 cut(s) | 557, 789, 864 |
| MspI | CCGG | 3 cut(s) | 130, 602, 891 |
| MspR9I | CCNGG | 1 cut(s) | 131 |
| MunI | CAATTG | 1 cut(s) | 42 |
| MwoI | GCNNNNNNNGC | 6 cut(s) | 167, 176, 188, 643, 833, 965 |
| NarI | GGCGCC | 1 cut(s) | 637 |
| NciI | CCSGG | 1 cut(s) | 131 |
| NcoI | CCATGG | 1 cut(s) | 582 |
| NdeII | GATC | 3 cut(s) | 154, 495, 988 |
| NlaIII | CATG | 5 cut(s) | 211, 512, 548, 586, 788 |
| NlaIV | GGNNCC | 2 cut(s) | 638, 737 |
| NmuCI | GTSAC | 2 cut(s) | 796, 931 |
| PagI | TCATGA | 1 cut(s) | 508 |
| PfeI | GAWTC | 4 cut(s) | 102, 115, 424, 605 |
| PkrI | GCNGC | 1 cut(s) | 181 |
| PleI | GAGTC | 1 cut(s) | 859 |
| PluTI | GGCGCC | 1 cut(s) | 640 |
| PpsI | GAGTC | 1 cut(s) | 859 |
| Psp124BI | GAGCTC | 2 cut(s) | 516, 919 |
| Psp1406I | AACGTT | 1 cut(s) | 264 |
| PspEI | GGTNACC | 1 cut(s) | 710 |
| PspN4I | GGNNCC | 2 cut(s) | 638, 737 |
| RseI | CAYNNNNRTG | 3 cut(s) | 557, 789, 864 |
| SacI | GAGCTC | 2 cut(s) | 516, 919 |
| SaqAI | TTAA | 3 cut(s) | 366, 374, 831 |
| SatI | GCNGC | 1 cut(s) | 180 |
| Sau3AI | GATC | 3 cut(s) | 154, 495, 988 |
| SchI | GAGTC | 1 cut(s) | 860 |
| ScrFI | CCNGG | 1 cut(s) | 131 |
| SduI | GDGCHC | 3 cut(s) | 516, 861, 919 |
| SfaNI | GCATC | 3 cut(s) | 94, 394, 665 |
| SfoI | GGCGCC | 1 cut(s) | 638 |
| SmiMI | CAYNNNNRTG | 3 cut(s) | 557, 789, 864 |
| SmlI | CTYRAG | 2 cut(s) | 89, 119 |
| SmoI | CTYRAG | 2 cut(s) | 89, 119 |
| Sse9I | AATT | 7 cut(s) | 17, 42, 380, 466, 571, 610, 927 |
| SsiI | CCGC | 3 cut(s) | 79, 313, 715 |
| SspDI | GGCGCC | 1 cut(s) | 636 |
| SspMI | CTAG | 1 cut(s) | 681 |
| SstI | GAGCTC | 2 cut(s) | 516, 919 |
| StyD4I | CCNGG | 1 cut(s) | 129 |
| StyI | CCWWGG | 1 cut(s) | 582 |
| TaaI | ACNGT | 2 cut(s) | 145, 653 |
| TaiI | ACGT | 3 cut(s) | 138, 267, 754 |
| TaqI | TCGA | 3 cut(s) | 246, 477, 575 |
| TasI | AATT | 7 cut(s) | 17, 42, 380, 466, 571, 610, 927 |
| TfiI | GAWTC | 4 cut(s) | 102, 115, 424, 605 |
| Tru1I | TTAA | 3 cut(s) | 366, 374, 831 |
| Tru9I | TTAA | 3 cut(s) | 366, 374, 831 |
| TseFI | GTSAC | 2 cut(s) | 796, 931 |
| TseI | GCWGC | 1 cut(s) | 179 |
| Tsp45I | GTSAC | 2 cut(s) | 796, 931 |
| TspDTI | ATGAA | 6 cut(s) | 21, 224, 257, 497, 542, 969 |
| TspGWI | ACGGA | 1 cut(s) | 508 |
| XapI | RAATTY | 1 cut(s) | 380 |
| XspI | CTAG | 1 cut(s) | 681 |