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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AasI | GACNNNNNNGTC | 1 cut(s) | 618 |
| AccB1I | GGYRCC | 1 cut(s) | 573 |
| AccIII | TCCGGA | 1 cut(s) | 538 |
| AciI | CCGC | 2 cut(s) | 250, 652 |
| AclWI | GGATC | 3 cut(s) | 182, 440, 510 |
| AcoI | YGGCCR | 1 cut(s) | 718 |
| AcsI | RAATTY | 2 cut(s) | 317, 873 |
| AdeI | CACNNNGTG | 1 cut(s) | 922 |
| AfaI | GTAC | 1 cut(s) | 137 |
| AfiI | CCNNNNNNNGG | 1 cut(s) | 569 |
| AflIII | ACRYGT | 1 cut(s) | 24 |
| AgsI | TTSAA | 2 cut(s) | 265, 769 |
| AjiI | CACGTC | 1 cut(s) | 25 |
| AjnI | CCWGG | 1 cut(s) | 18 |
| AluBI | AGCT | 6 cut(s) | 44, 50, 451, 853, 863, 914 |
| AluI | AGCT | 6 cut(s) | 44, 50, 451, 853, 863, 914 |
| Alw21I | GWGCWC | 2 cut(s) | 855, 865 |
| AlwI | GGATC | 3 cut(s) | 182, 440, 510 |
| Ama87I | CYCGRG | 1 cut(s) | 8 |
| Aor13HI | TCCGGA | 1 cut(s) | 538 |
| AoxI | GGCC | 1 cut(s) | 718 |
| ApeKI | GCWGC | 1 cut(s) | 68 |
| ApoI | RAATTY | 2 cut(s) | 317, 873 |
| Asp700I | GAANNNNTTC | 2 cut(s) | 294, 873 |
| AspLEI | GCGC | 2 cut(s) | 734, 775 |
| AspS9I | GGNCC | 1 cut(s) | 620 |
| AsuHPI | GGTGA | 1 cut(s) | 871 |
| AvaI | CYCGRG | 1 cut(s) | 8 |
| AvaII | GGWCC | 1 cut(s) | 620 |
| BaeGI | GKGCMC | 1 cut(s) | 840 |
| BalI | TGGCCA | 1 cut(s) | 720 |
| BanI | GGYRCC | 1 cut(s) | 573 |
| BanII | GRGCYC | 2 cut(s) | 855, 865 |
| BauI | CACGAG | 2 cut(s) | 854, 864 |
| BbsI | GAAGAC | 2 cut(s) | 162, 365 |
| Bbv12I | GWGCWC | 2 cut(s) | 855, 865 |
| BbvI | GCAGC | 1 cut(s) | 80 |
| BccI | CCATC | 5 cut(s) | 104, 231, 385, 386, 759 |
| BciT130I | CCWGG | 1 cut(s) | 20 |
| BciVI | GTATCC | 1 cut(s) | 595 |
| BclI | TGATCA | 1 cut(s) | 828 |
| BfaI | CTAG | 4 cut(s) | 15, 162, 227, 950 |
| BfmI | CTRYAG | 1 cut(s) | 423 |
| BfoI | RGCGCY | 2 cut(s) | 735, 776 |
| BfuI | GTATCC | 1 cut(s) | 595 |
| BglI | GCCNNNNNGGC | 1 cut(s) | 77 |
| BisI | GCNGC | 1 cut(s) | 69 |
| BlsI | GCNGC | 1 cut(s) | 70 |
| Bme1390I | CCNGG | 1 cut(s) | 20 |
| Bme18I | GGWCC | 1 cut(s) | 620 |
| BmeT110I | CYCGRG | 1 cut(s) | 8 |
| BmgBI | CACGTC | 1 cut(s) | 25 |
| BmgT120I | GGNCC | 1 cut(s) | 620 |
| BmiI | GGNNCC | 2 cut(s) | 575, 674 |
| BmrFI | CCNGG | 1 cut(s) | 20 |
| BpiI | GAAGAC | 2 cut(s) | 162, 365 |
| BpmI | CTGGAG | 1 cut(s) | 116 |
| BpuEI | CTTGAG | 1 cut(s) | 30 |
| BsaJI | CCNNGG | 1 cut(s) | 519 |
| BsaWI | WCCGGW | 1 cut(s) | 538 |
| Bsc4I | CCNNNNNNNGG | 1 cut(s) | 569 |
| Bse1I | ACTGG | 1 cut(s) | 133 |
| BseAI | TCCGGA | 1 cut(s) | 538 |
| BseBI | CCWGG | 1 cut(s) | 20 |
| BseDI | CCNNGG | 1 cut(s) | 519 |
| BseGI | GGATG | 3 cut(s) | 99, 127, 489 |
| BseLI | CCNNNNNNNGG | 1 cut(s) | 569 |
| BseNI | ACTGG | 1 cut(s) | 133 |
| BseSI | GKGCMC | 1 cut(s) | 840 |
| BseXI | GCAGC | 1 cut(s) | 80 |
| BshFI | GGCC | 1 cut(s) | 720 |
| BshNI | GGYRCC | 1 cut(s) | 573 |
| BsiHKAI | GWGCWC | 2 cut(s) | 855, 865 |
| BsiHKCI | CYCGRG | 1 cut(s) | 8 |
| BsiSI | CCGG | 1 cut(s) | 539 |
| BslI | CCNNNNNNNGG | 1 cut(s) | 569 |
| BsnI | GGCC | 1 cut(s) | 720 |
| BsoBI | CYCGRG | 1 cut(s) | 8 |
| Bsp1286I | GDGCHC | 3 cut(s) | 840, 855, 865 |
| Bsp13I | TCCGGA | 1 cut(s) | 538 |
| Bsp143I | GATC | 6 cut(s) | 174, 333, 432, 515, 828, 946 |
| BspACI | CCGC | 2 cut(s) | 250, 652 |
| BspANI | GGCC | 1 cut(s) | 720 |
| BspEI | TCCGGA | 1 cut(s) | 538 |
| BspHI | TCATGA | 1 cut(s) | 445 |
| BspLI | GGNNCC | 2 cut(s) | 575, 674 |
| BspMAI | CTGCAG | 1 cut(s) | 427 |
| BspPI | GGATC | 3 cut(s) | 182, 440, 510 |
| BspT107I | GGYRCC | 1 cut(s) | 573 |
| BsrI | ACTGG | 1 cut(s) | 133 |
| BssECI | CCNNGG | 1 cut(s) | 519 |
| BssMI | GATC | 6 cut(s) | 174, 333, 432, 515, 828, 946 |
| BssSI | CACGAG | 2 cut(s) | 854, 864 |
| Bst2BI | CACGAG | 2 cut(s) | 854, 864 |
| Bst2UI | CCWGG | 1 cut(s) | 20 |
| Bst4CI | ACNGT | 1 cut(s) | 34 |
| BstC8I | GCNNGC | 1 cut(s) | 42 |
| BstDEI | CTNAG | 4 cut(s) | 73, 399, 596, 744 |
| BstDSI | CCRYGG | 1 cut(s) | 519 |
| BstEII | GGTNACC | 1 cut(s) | 647 |
| BstF5I | GGATG | 3 cut(s) | 99, 127, 489 |
| BstH2I | RGCGCY | 2 cut(s) | 735, 776 |
| BstHHI | GCGC | 2 cut(s) | 734, 775 |
| BstKTI | GATC | 6 cut(s) | 177, 336, 435, 518, 831, 949 |
| BstMBI | GATC | 6 cut(s) | 174, 333, 432, 515, 828, 946 |
| BstMWI | GCNNNNNNNGC | 4 cut(s) | 77, 86, 770, 911 |
| BstNI | CCWGG | 1 cut(s) | 20 |
| BstPI | GGTNACC | 1 cut(s) | 647 |
| BstSCI | CCNGG | 1 cut(s) | 18 |
| BstSFI | CTRYAG | 1 cut(s) | 423 |
| BstSLI | GKGCMC | 1 cut(s) | 840 |
| BstV1I | GCAGC | 1 cut(s) | 80 |
| BstV2I | GAAGAC | 2 cut(s) | 162, 365 |
| BstX2I | RGATCY | 2 cut(s) | 174, 515 |
| BstXI | CCANNNNNNTGG | 1 cut(s) | 728 |
| BstYI | RGATCY | 2 cut(s) | 174, 515 |
| BsuI | GTATCC | 1 cut(s) | 595 |
| BsuRI | GGCC | 1 cut(s) | 720 |
| BtgI | CCRYGG | 1 cut(s) | 519 |
| BtrI | CACGTC | 1 cut(s) | 25 |
| BtsCI | GGATG | 3 cut(s) | 99, 127, 489 |
| BtsIMutI | CAGTG | 1 cut(s) | 471 |
| Cac8I | GCNNGC | 1 cut(s) | 42 |
| CciI | TCATGA | 1 cut(s) | 445 |
| CfoI | GCGC | 2 cut(s) | 734, 775 |
| Cfr13I | GGNCC | 1 cut(s) | 620 |
| Csp6I | GTAC | 1 cut(s) | 136 |
| CviAII | CATG | 3 cut(s) | 446, 482, 722 |
| CviQI | GTAC | 1 cut(s) | 136 |
| DdeI | CTNAG | 4 cut(s) | 73, 399, 596, 744 |
| DpnI | GATC | 6 cut(s) | 176, 335, 434, 517, 830, 948 |
| DpnII | GATC | 6 cut(s) | 174, 333, 432, 515, 828, 946 |
| DraIII | CACNNNGTG | 1 cut(s) | 922 |
| DrdI | GACNNNNNNGTC | 1 cut(s) | 618 |
| DseDI | GACNNNNNNGTC | 1 cut(s) | 618 |
| EaeI | YGGCCR | 1 cut(s) | 718 |
| Ecl136II | GAGCTC | 2 cut(s) | 853, 863 |
| Eco24I | GRGCYC | 2 cut(s) | 855, 865 |
| Eco47I | GGWCC | 1 cut(s) | 620 |
| Eco53kI | GAGCTC | 2 cut(s) | 853, 863 |
| Eco88I | CYCGRG | 1 cut(s) | 8 |
| Eco91I | GGTNACC | 1 cut(s) | 647 |
| EcoICRI | GAGCTC | 2 cut(s) | 853, 863 |
| EcoO65I | GGTNACC | 1 cut(s) | 647 |
| EcoRII | CCWGG | 1 cut(s) | 18 |
| EcoT38I | GRGCYC | 2 cut(s) | 855, 865 |
| FaeI | CATG | 3 cut(s) | 449, 485, 725 |
| FatI | CATG | 3 cut(s) | 445, 481, 721 |
| FauNDI | CATATG | 1 cut(s) | 117 |
| FbaI | TGATCA | 1 cut(s) | 828 |
| Fnu4HI | GCNGC | 1 cut(s) | 69 |
| FokI | GGATG | 3 cut(s) | 86, 134, 476 |
| FriOI | GRGCYC | 2 cut(s) | 855, 865 |
| Fsp4HI | GCNGC | 1 cut(s) | 69 |
| FspBI | CTAG | 4 cut(s) | 15, 162, 227, 950 |
| GlaI | GCGC | 2 cut(s) | 733, 774 |
| GluI | GCNGC | 1 cut(s) | 69 |
| GsuI | CTGGAG | 1 cut(s) | 116 |
| HaeII | RGCGCY | 2 cut(s) | 735, 776 |
| HaeIII | GGCC | 1 cut(s) | 720 |
| HapII | CCGG | 1 cut(s) | 539 |
| HhaI | GCGC | 2 cut(s) | 734, 775 |
| Hin1II | CATG | 3 cut(s) | 449, 485, 725 |
| Hin6I | GCGC | 2 cut(s) | 732, 773 |
| HinP1I | GCGC | 2 cut(s) | 732, 773 |
| HincII | GTYRAC | 2 cut(s) | 30, 686 |
| HindII | GTYRAC | 2 cut(s) | 30, 686 |
| HindIII | AAGCTT | 1 cut(s) | 48 |
| HinfI | GANTC | 5 cut(s) | 4, 125, 209, 361, 542 |
| HpaI | GTTAAC | 1 cut(s) | 30 |
| HpaII | CCGG | 1 cut(s) | 539 |
| HphI | GGTGA | 1 cut(s) | 871 |
| Hpy166II | GTNNAC | 2 cut(s) | 30, 686 |
| Hpy188I | TCNGA | 1 cut(s) | 289 |
| Hpy8I | GTNNAC | 2 cut(s) | 30, 686 |
| HpyAV | CCTTC | 3 cut(s) | 159, 382, 638 |
| HpyCH4III | ACNGT | 1 cut(s) | 34 |
| HpyCH4IV | ACGT | 4 cut(s) | 24, 201, 613, 688 |
| HpyCH4V | TGCA | 2 cut(s) | 386, 425 |
| HpyF10VI | GCNNNNNNNGC | 4 cut(s) | 77, 86, 770, 911 |
| HpyF3I | CTNAG | 4 cut(s) | 73, 399, 596, 744 |
| HpySE526I | ACGT | 4 cut(s) | 24, 201, 613, 688 |
| Hsp92II | CATG | 3 cut(s) | 449, 485, 725 |
| HspAI | GCGC | 2 cut(s) | 732, 773 |
| Kpn2I | TCCGGA | 1 cut(s) | 538 |
| Ksp22I | TGATCA | 1 cut(s) | 828 |
| KspAI | GTTAAC | 1 cut(s) | 30 |
| Kzo9I | GATC | 6 cut(s) | 174, 333, 432, 515, 828, 946 |
| LmnI | GCTCC | 1 cut(s) | 135 |
| Lsp1109I | GCAGC | 1 cut(s) | 80 |
| MaeI | CTAG | 4 cut(s) | 15, 162, 227, 950 |
| MaeII | ACGT | 4 cut(s) | 24, 201, 613, 688 |
| MaeIII | GTNAC | 4 cut(s) | 206, 418, 469, 647 |
| MalI | GATC | 6 cut(s) | 176, 335, 434, 517, 830, 948 |
| MboI | GATC | 6 cut(s) | 174, 333, 432, 515, 828, 946 |
| MboII | GAAGA | 7 cut(s) | 68, 164, 167, 370, 511, 881, 953 |
| MflI | RGATCY | 2 cut(s) | 174, 515 |
| MhlI | GDGCHC | 3 cut(s) | 840, 855, 865 |
| MlsI | TGGCCA | 1 cut(s) | 720 |
| MluCI | AATT | 6 cut(s) | 259, 317, 411, 508, 547, 873 |
| MluNI | TGGCCA | 1 cut(s) | 720 |
| MlyI | GAGTC | 2 cut(s) | 203, 355 |
| MnlI | CCTC | 7 cut(s) | 70, 257, 563, 694, 698, 724, 786 |
| Mox20I | TGGCCA | 1 cut(s) | 720 |
| MroI | TCCGGA | 1 cut(s) | 538 |
| MroXI | GAANNNNTTC | 2 cut(s) | 294, 873 |
| MscI | TGGCCA | 1 cut(s) | 720 |
| MseI | TTAA | 3 cut(s) | 29, 303, 311 |
| MslI | CAYNNNNRTG | 4 cut(s) | 104, 120, 494, 726 |
| Msp20I | TGGCCA | 1 cut(s) | 720 |
| MspI | CCGG | 1 cut(s) | 539 |
| MspR9I | CCNGG | 1 cut(s) | 20 |
| MvaI | CCWGG | 1 cut(s) | 20 |
| MwoI | GCNNNNNNNGC | 4 cut(s) | 77, 86, 770, 911 |
| NdeI | CATATG | 1 cut(s) | 117 |
| NdeII | GATC | 6 cut(s) | 174, 333, 432, 515, 828, 946 |
| NlaIII | CATG | 3 cut(s) | 449, 485, 725 |
| NlaIV | GGNNCC | 2 cut(s) | 575, 674 |
| NmuCI | GTSAC | 2 cut(s) | 206, 469 |
| PaeR7I | CTCGAG | 1 cut(s) | 8 |
| PagI | TCATGA | 1 cut(s) | 445 |
| PdmI | GAANNNNTTC | 2 cut(s) | 294, 873 |
| PfeI | GAWTC | 3 cut(s) | 4, 125, 542 |
| PkrI | GCNGC | 1 cut(s) | 70 |
| PleI | GAGTC | 2 cut(s) | 203, 355 |
| PpsI | GAGTC | 2 cut(s) | 203, 355 |
| Psp124BI | GAGCTC | 2 cut(s) | 855, 865 |
| Psp6I | CCWGG | 1 cut(s) | 18 |
| PspEI | GGTNACC | 1 cut(s) | 647 |
| PspGI | CCWGG | 1 cut(s) | 18 |
| PspN4I | GGNNCC | 2 cut(s) | 575, 674 |
| PspPI | GGNCC | 1 cut(s) | 620 |
| PstI | CTGCAG | 1 cut(s) | 427 |
| PsuI | RGATCY | 2 cut(s) | 174, 515 |
| RsaI | GTAC | 1 cut(s) | 137 |
| RsaNI | GTAC | 1 cut(s) | 136 |
| RseI | CAYNNNNRTG | 4 cut(s) | 104, 120, 494, 726 |
| SacI | GAGCTC | 2 cut(s) | 855, 865 |
| SaqAI | TTAA | 3 cut(s) | 29, 303, 311 |
| SatI | GCNGC | 1 cut(s) | 69 |
| Sau3AI | GATC | 6 cut(s) | 174, 333, 432, 515, 828, 946 |
| Sau96I | GGNCC | 1 cut(s) | 620 |
| SchI | GAGTC | 2 cut(s) | 203, 355 |
| ScrFI | CCNGG | 1 cut(s) | 20 |
| SduI | GDGCHC | 3 cut(s) | 840, 855, 865 |
| SfcI | CTRYAG | 1 cut(s) | 423 |
| Sfr274I | CTCGAG | 1 cut(s) | 8 |
| SinI | GGWCC | 1 cut(s) | 620 |
| SlaI | CTCGAG | 1 cut(s) | 8 |
| SmiMI | CAYNNNNRTG | 4 cut(s) | 104, 120, 494, 726 |
| SmlI | CTYRAG | 2 cut(s) | 8, 45 |
| SmoI | CTYRAG | 2 cut(s) | 8, 45 |
| Sse9I | AATT | 6 cut(s) | 259, 317, 411, 508, 547, 873 |
| SsiI | CCGC | 2 cut(s) | 250, 652 |
| SspMI | CTAG | 4 cut(s) | 15, 162, 227, 950 |
| SstI | GAGCTC | 2 cut(s) | 855, 865 |
| StyD4I | CCNGG | 1 cut(s) | 18 |
| TaaI | ACNGT | 1 cut(s) | 34 |
| TaiI | ACGT | 4 cut(s) | 27, 204, 616, 691 |
| TaqI | TCGA | 4 cut(s) | 9, 409, 512, 813 |
| TasI | AATT | 6 cut(s) | 259, 317, 411, 508, 547, 873 |
| TfiI | GAWTC | 3 cut(s) | 4, 125, 542 |
| Tru1I | TTAA | 3 cut(s) | 29, 303, 311 |
| Tru9I | TTAA | 3 cut(s) | 29, 303, 311 |
| TscAI | CASTG | 1 cut(s) | 478 |
| TseFI | GTSAC | 2 cut(s) | 206, 469 |
| TseI | GCWGC | 1 cut(s) | 68 |
| Tsp45I | GTSAC | 2 cut(s) | 206, 469 |
| TspDTI | ATGAA | 5 cut(s) | 161, 165, 329, 434, 479 |
| TspGWI | ACGGA | 4 cut(s) | 194, 445, 508, 685 |
| TspRI | CASTG | 1 cut(s) | 478 |
| VpaK11BI | GGWCC | 1 cut(s) | 620 |
| XapI | RAATTY | 2 cut(s) | 317, 873 |
| XbaI | TCTAGA | 1 cut(s) | 949 |
| XhoI | CTCGAG | 1 cut(s) | 8 |
| XmnI | GAANNNNTTC | 2 cut(s) | 294, 873 |
| XspI | CTAG | 4 cut(s) | 15, 162, 227, 950 |