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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AasI | GACNNNNNNGTC | 1 cut(s) | 375 |
| AatII | GACGTC | 1 cut(s) | 373 |
| AccB1I | GGYRCC | 1 cut(s) | 529 |
| AccB7I | CCANNNNNTGG | 1 cut(s) | 740 |
| AccII | CGCG | 3 cut(s) | 137, 218, 519 |
| AciI | CCGC | 3 cut(s) | 340, 465, 609 |
| AclI | AACGTT | 1 cut(s) | 291 |
| AclWI | GGATC | 2 cut(s) | 585, 732 |
| AcsI | RAATTY | 1 cut(s) | 102 |
| AcyI | GRCGYC | 2 cut(s) | 370, 530 |
| AfaI | GTAC | 2 cut(s) | 324, 607 |
| AfiI | CCNNNNNNNGG | 5 cut(s) | 64, 241, 397, 498, 740 |
| AflII | CTTAAG | 1 cut(s) | 89 |
| AflIII | ACRYGT | 2 cut(s) | 445, 602 |
| AgsI | TTSAA | 3 cut(s) | 167, 355, 513 |
| AjnI | CCWGG | 2 cut(s) | 124, 373 |
| AloI | GAACNNNNNNTCC | 2 cut(s) | 493, 525 |
| AluBI | AGCT | 3 cut(s) | 24, 155, 179 |
| AluI | AGCT | 3 cut(s) | 24, 155, 179 |
| Alw21I | GWGCWC | 1 cut(s) | 427 |
| Alw26I | GTCTC | 1 cut(s) | 32 |
| Alw44I | GTGCAC | 1 cut(s) | 423 |
| AlwI | GGATC | 2 cut(s) | 585, 732 |
| Ama87I | CYCGRG | 1 cut(s) | 35 |
| AoxI | GGCC | 1 cut(s) | 594 |
| ApaLI | GTGCAC | 1 cut(s) | 423 |
| ApeKI | GCWGC | 1 cut(s) | 277 |
| ApoI | RAATTY | 1 cut(s) | 102 |
| AspLEI | GCGC | 6 cut(s) | 50, 81, 139, 220, 521, 532 |
| AspS9I | GGNCC | 3 cut(s) | 67, 377, 594 |
| AsuHPI | GGTGA | 1 cut(s) | 704 |
| AvaI | CYCGRG | 1 cut(s) | 35 |
| AvaII | GGWCC | 2 cut(s) | 67, 377 |
| BaeGI | GKGCMC | 1 cut(s) | 427 |
| BanI | GGYRCC | 1 cut(s) | 529 |
| BauI | CACGAG | 1 cut(s) | 413 |
| BbsI | GAAGAC | 2 cut(s) | 252, 720 |
| Bbv12I | GWGCWC | 1 cut(s) | 427 |
| BbvI | GCAGC | 1 cut(s) | 289 |
| BccI | CCATC | 3 cut(s) | 122, 321, 683 |
| BcgI | CGANNNNNNTGC | 2 cut(s) | 404, 438 |
| BciT130I | CCWGG | 2 cut(s) | 126, 375 |
| BciVI | GTATCC | 1 cut(s) | 47 |
| BcoDI | GTCTC | 1 cut(s) | 32 |
| BfaI | CTAG | 2 cut(s) | 45, 698 |
| BfoI | RGCGCY | 1 cut(s) | 533 |
| BfrI | CTTAAG | 1 cut(s) | 89 |
| BfuI | GTATCC | 1 cut(s) | 47 |
| BglI | GCCNNNNNGGC | 1 cut(s) | 527 |
| BglII | AGATCT | 1 cut(s) | 700 |
| BisI | GCNGC | 1 cut(s) | 278 |
| BlsI | GCNGC | 1 cut(s) | 279 |
| Bme1390I | CCNGG | 2 cut(s) | 126, 375 |
| Bme18I | GGWCC | 2 cut(s) | 67, 377 |
| BmeT110I | CYCGRG | 1 cut(s) | 35 |
| BmgT120I | GGNCC | 3 cut(s) | 67, 377, 594 |
| BmiI | GGNNCC | 6 cut(s) | 68, 431, 469, 531, 546, 595 |
| BmrFI | CCNGG | 2 cut(s) | 126, 375 |
| BpiI | GAAGAC | 2 cut(s) | 252, 720 |
| BpuEI | CTTGAG | 1 cut(s) | 293 |
| BsaBI | GATNNNNATC | 3 cut(s) | 576, 693, 699 |
| BsaHI | GRCGYC | 2 cut(s) | 370, 530 |
| BsaJI | CCNNGG | 2 cut(s) | 433, 478 |
| Bsc4I | CCNNNNNNNGG | 5 cut(s) | 64, 241, 397, 498, 740 |
| Bse8I | GATNNNNATC | 3 cut(s) | 576, 693, 699 |
| BseBI | CCWGG | 2 cut(s) | 126, 375 |
| BseDI | CCNNGG | 2 cut(s) | 433, 478 |
| BseGI | GGATG | 1 cut(s) | 114 |
| BseJI | GATNNNNATC | 3 cut(s) | 576, 693, 699 |
| BseLI | CCNNNNNNNGG | 5 cut(s) | 64, 241, 397, 498, 740 |
| BseSI | GKGCMC | 1 cut(s) | 427 |
| BseXI | GCAGC | 1 cut(s) | 289 |
| Bsh1236I | CGCG | 3 cut(s) | 137, 218, 519 |
| BshFI | GGCC | 1 cut(s) | 596 |
| BshNI | GGYRCC | 1 cut(s) | 529 |
| BsiHKAI | GWGCWC | 1 cut(s) | 427 |
| BsiHKCI | CYCGRG | 1 cut(s) | 35 |
| BslFI | GGGAC | 1 cut(s) | 14 |
| BslI | CCNNNNNNNGG | 5 cut(s) | 64, 241, 397, 498, 740 |
| BsmAI | GTCTC | 1 cut(s) | 32 |
| BsmFI | GGGAC | 1 cut(s) | 14 |
| BsnI | GGCC | 1 cut(s) | 596 |
| BsoBI | CYCGRG | 1 cut(s) | 35 |
| Bsp1286I | GDGCHC | 1 cut(s) | 427 |
| Bsp143I | GATC | 6 cut(s) | 536, 577, 682, 694, 700, 724 |
| Bsp19I | CCATGG | 1 cut(s) | 478 |
| BspACI | CCGC | 3 cut(s) | 340, 465, 609 |
| BspANI | GGCC | 1 cut(s) | 596 |
| BspFNI | CGCG | 3 cut(s) | 137, 218, 519 |
| BspHI | TCATGA | 1 cut(s) | 195 |
| BspLI | GGNNCC | 6 cut(s) | 68, 431, 469, 531, 546, 595 |
| BspPI | GGATC | 2 cut(s) | 585, 732 |
| BspT107I | GGYRCC | 1 cut(s) | 529 |
| BspTI | CTTAAG | 1 cut(s) | 89 |
| BssECI | CCNNGG | 2 cut(s) | 433, 478 |
| BssMI | GATC | 6 cut(s) | 536, 577, 682, 694, 700, 724 |
| BssNI | GRCGYC | 2 cut(s) | 370, 530 |
| BssSI | CACGAG | 1 cut(s) | 413 |
| BssT1I | CCWWGG | 1 cut(s) | 478 |
| Bst2BI | CACGAG | 1 cut(s) | 413 |
| Bst2UI | CCWGG | 2 cut(s) | 126, 375 |
| Bst4CI | ACNGT | 1 cut(s) | 434 |
| Bst6I | CTCTTC | 1 cut(s) | 446 |
| BstACI | GRCGYC | 2 cut(s) | 370, 530 |
| BstAFI | CTTAAG | 1 cut(s) | 89 |
| BstC8I | GCNNGC | 2 cut(s) | 153, 423 |
| BstDEI | CTNAG | 1 cut(s) | 704 |
| BstDSI | CCRYGG | 2 cut(s) | 433, 478 |
| BstENI | CCTNNNNNAGG | 1 cut(s) | 239 |
| BstF5I | GGATG | 1 cut(s) | 114 |
| BstFNI | CGCG | 3 cut(s) | 137, 218, 519 |
| BstH2I | RGCGCY | 1 cut(s) | 533 |
| BstHHI | GCGC | 6 cut(s) | 50, 81, 139, 220, 521, 532 |
| BstKTI | GATC | 6 cut(s) | 539, 580, 685, 697, 703, 727 |
| BstMAI | GTCTC | 1 cut(s) | 32 |
| BstMBI | GATC | 6 cut(s) | 536, 577, 682, 694, 700, 724 |
| BstMWI | GCNNNNNNNGC | 4 cut(s) | 167, 176, 527, 659 |
| BstNI | CCWGG | 2 cut(s) | 126, 375 |
| BstNSI | RCATGY | 1 cut(s) | 606 |
| BstSCI | CCNGG | 2 cut(s) | 124, 373 |
| BstSLI | GKGCMC | 1 cut(s) | 427 |
| BstUI | CGCG | 3 cut(s) | 137, 218, 519 |
| BstV1I | GCAGC | 1 cut(s) | 289 |
| BstV2I | GAAGAC | 2 cut(s) | 252, 720 |
| BstX2I | RGATCY | 1 cut(s) | 700 |
| BstXI | CCANNNNNNTGG | 1 cut(s) | 125 |
| BstYI | RGATCY | 1 cut(s) | 700 |
| BsuI | GTATCC | 1 cut(s) | 47 |
| BsuRI | GGCC | 1 cut(s) | 596 |
| BtgI | CCRYGG | 2 cut(s) | 433, 478 |
| BtsCI | GGATG | 1 cut(s) | 114 |
| Cac8I | GCNNGC | 2 cut(s) | 153, 423 |
| CciI | TCATGA | 1 cut(s) | 195 |
| CfoI | GCGC | 6 cut(s) | 50, 81, 139, 220, 521, 532 |
| Cfr13I | GGNCC | 3 cut(s) | 67, 377, 594 |
| CseI | GACGC | 1 cut(s) | 224 |
| Csp6I | GTAC | 2 cut(s) | 323, 606 |
| CviAII | CATG | 5 cut(s) | 196, 208, 479, 603, 670 |
| CviQI | GTAC | 2 cut(s) | 323, 606 |
| DdeI | CTNAG | 1 cut(s) | 704 |
| DinI | GGCGCC | 1 cut(s) | 531 |
| DpnI | GATC | 6 cut(s) | 538, 579, 684, 696, 702, 726 |
| DpnII | GATC | 6 cut(s) | 536, 577, 682, 694, 700, 724 |
| DrdI | GACNNNNNNGTC | 1 cut(s) | 375 |
| DseDI | GACNNNNNNGTC | 1 cut(s) | 375 |
| Eam1104I | CTCTTC | 1 cut(s) | 446 |
| EarI | CTCTTC | 1 cut(s) | 446 |
| EciI | GGCGGA | 1 cut(s) | 480 |
| Eco130I | CCWWGG | 1 cut(s) | 478 |
| Eco47I | GGWCC | 2 cut(s) | 67, 377 |
| Eco88I | CYCGRG | 1 cut(s) | 35 |
| EcoNI | CCTNNNNNAGG | 1 cut(s) | 239 |
| EcoRI | GAATTC | 1 cut(s) | 102 |
| EcoRII | CCWGG | 2 cut(s) | 124, 373 |
| EcoT14I | CCWWGG | 1 cut(s) | 478 |
| EgeI | GGCGCC | 1 cut(s) | 531 |
| EheI | GGCGCC | 1 cut(s) | 531 |
| ErhI | CCWWGG | 1 cut(s) | 478 |
| FaeI | CATG | 5 cut(s) | 199, 211, 482, 606, 673 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 8, 40 |
| FaqI | GGGAC | 1 cut(s) | 14 |
| FatI | CATG | 5 cut(s) | 195, 207, 478, 602, 669 |
| FauNDI | CATATG | 1 cut(s) | 382 |
| Fnu4HI | GCNGC | 1 cut(s) | 278 |
| FokI | GGATG | 1 cut(s) | 101 |
| Fsp4HI | GCNGC | 1 cut(s) | 278 |
| FspBI | CTAG | 2 cut(s) | 45, 698 |
| GlaI | GCGC | 6 cut(s) | 49, 80, 138, 219, 520, 531 |
| GluI | GCNGC | 1 cut(s) | 278 |
| HaeII | RGCGCY | 1 cut(s) | 533 |
| HaeIII | GGCC | 1 cut(s) | 596 |
| HgaI | GACGC | 1 cut(s) | 224 |
| HhaI | GCGC | 6 cut(s) | 50, 81, 139, 220, 521, 532 |
| Hin1I | GRCGYC | 2 cut(s) | 370, 530 |
| Hin1II | CATG | 5 cut(s) | 199, 211, 482, 606, 673 |
| Hin6I | GCGC | 6 cut(s) | 48, 79, 137, 218, 519, 530 |
| HinP1I | GCGC | 6 cut(s) | 48, 79, 137, 218, 519, 530 |
| HincII | GTYRAC | 1 cut(s) | 443 |
| HindII | GTYRAC | 1 cut(s) | 443 |
| HinfI | GANTC | 1 cut(s) | 299 |
| HphI | GGTGA | 1 cut(s) | 704 |
| Hpy166II | GTNNAC | 2 cut(s) | 425, 443 |
| Hpy188I | TCNGA | 3 cut(s) | 71, 132, 475 |
| Hpy8I | GTNNAC | 2 cut(s) | 425, 443 |
| HpyAV | CCTTC | 1 cut(s) | 395 |
| HpyCH4III | ACNGT | 1 cut(s) | 434 |
| HpyCH4IV | ACGT | 4 cut(s) | 291, 370, 445, 641 |
| HpyCH4V | TGCA | 2 cut(s) | 425, 626 |
| HpyF10VI | GCNNNNNNNGC | 4 cut(s) | 167, 176, 527, 659 |
| HpyF3I | CTNAG | 1 cut(s) | 704 |
| HpySE526I | ACGT | 4 cut(s) | 291, 370, 445, 641 |
| Hsp92I | GRCGYC | 2 cut(s) | 370, 530 |
| Hsp92II | CATG | 5 cut(s) | 199, 211, 482, 606, 673 |
| HspAI | GCGC | 6 cut(s) | 48, 79, 137, 218, 519, 530 |
| KasI | GGCGCC | 1 cut(s) | 529 |
| Kzo9I | GATC | 6 cut(s) | 536, 577, 682, 694, 700, 724 |
| LmnI | GCTCC | 3 cut(s) | 225, 467, 544 |
| Lsp1109I | GCAGC | 1 cut(s) | 289 |
| MaeI | CTAG | 2 cut(s) | 45, 698 |
| MaeII | ACGT | 4 cut(s) | 291, 370, 445, 641 |
| MaeIII | GTNAC | 3 cut(s) | 5, 296, 485 |
| MalI | GATC | 6 cut(s) | 538, 579, 684, 696, 702, 726 |
| MboI | GATC | 6 cut(s) | 536, 577, 682, 694, 700, 724 |
| MboII | GAAGA | 4 cut(s) | 257, 463, 692, 725 |
| MflI | RGATCY | 1 cut(s) | 700 |
| MhlI | GDGCHC | 1 cut(s) | 427 |
| MluCI | AATT | 5 cut(s) | 102, 189, 361, 664, 738 |
| Mly113I | GGCGCC | 1 cut(s) | 530 |
| MlyI | GAGTC | 1 cut(s) | 293 |
| MmeI | TCCRAC | 1 cut(s) | 498 |
| MseI | TTAA | 2 cut(s) | 90, 754 |
| MslI | CAYNNNNRTG | 2 cut(s) | 210, 558 |
| MspCI | CTTAAG | 1 cut(s) | 89 |
| MspR9I | CCNGG | 2 cut(s) | 126, 375 |
| MvaI | CCWGG | 2 cut(s) | 126, 375 |
| MvnI | CGCG | 3 cut(s) | 137, 218, 519 |
| MwoI | GCNNNNNNNGC | 4 cut(s) | 167, 176, 527, 659 |
| NarI | GGCGCC | 1 cut(s) | 530 |
| NcoI | CCATGG | 1 cut(s) | 478 |
| NdeI | CATATG | 1 cut(s) | 382 |
| NdeII | GATC | 6 cut(s) | 536, 577, 682, 694, 700, 724 |
| NlaIII | CATG | 5 cut(s) | 199, 211, 482, 606, 673 |
| NlaIV | GGNNCC | 6 cut(s) | 68, 431, 469, 531, 546, 595 |
| NmuCI | GTSAC | 1 cut(s) | 296 |
| NspI | RCATGY | 1 cut(s) | 606 |
| PaeR7I | CTCGAG | 1 cut(s) | 35 |
| PagI | TCATGA | 1 cut(s) | 195 |
| PciI | ACATGT | 1 cut(s) | 602 |
| PflMI | CCANNNNNTGG | 1 cut(s) | 740 |
| PkrI | GCNGC | 1 cut(s) | 279 |
| PleI | GAGTC | 1 cut(s) | 293 |
| PluTI | GGCGCC | 1 cut(s) | 533 |
| PpsI | GAGTC | 1 cut(s) | 293 |
| PscI | ACATGT | 1 cut(s) | 602 |
| Psp1406I | AACGTT | 1 cut(s) | 291 |
| Psp6I | CCWGG | 2 cut(s) | 124, 373 |
| PspGI | CCWGG | 2 cut(s) | 124, 373 |
| PspN4I | GGNNCC | 6 cut(s) | 68, 431, 469, 531, 546, 595 |
| PspPI | GGNCC | 3 cut(s) | 67, 377, 594 |
| PsuI | RGATCY | 1 cut(s) | 700 |
| RsaI | GTAC | 2 cut(s) | 324, 607 |
| RsaNI | GTAC | 2 cut(s) | 323, 606 |
| RseI | CAYNNNNRTG | 2 cut(s) | 210, 558 |
| SaqAI | TTAA | 2 cut(s) | 90, 754 |
| SatI | GCNGC | 1 cut(s) | 278 |
| Sau3AI | GATC | 6 cut(s) | 536, 577, 682, 694, 700, 724 |
| Sau96I | GGNCC | 3 cut(s) | 67, 377, 594 |
| SchI | GAGTC | 1 cut(s) | 293 |
| ScrFI | CCNGG | 2 cut(s) | 126, 375 |
| SduI | GDGCHC | 1 cut(s) | 427 |
| SfoI | GGCGCC | 1 cut(s) | 531 |
| Sfr274I | CTCGAG | 1 cut(s) | 35 |
| SinI | GGWCC | 2 cut(s) | 67, 377 |
| SlaI | CTCGAG | 1 cut(s) | 35 |
| SmiMI | CAYNNNNRTG | 2 cut(s) | 210, 558 |
| SmlI | CTYRAG | 3 cut(s) | 35, 89, 272 |
| SmoI | CTYRAG | 3 cut(s) | 35, 89, 272 |
| Sse9I | AATT | 5 cut(s) | 102, 189, 361, 664, 738 |
| SsiI | CCGC | 3 cut(s) | 340, 465, 609 |
| SspDI | GGCGCC | 1 cut(s) | 529 |
| SspMI | CTAG | 2 cut(s) | 45, 698 |
| StyD4I | CCNGG | 2 cut(s) | 124, 373 |
| StyI | CCWWGG | 1 cut(s) | 478 |
| TaaI | ACNGT | 1 cut(s) | 434 |
| TaiI | ACGT | 4 cut(s) | 294, 373, 448, 644 |
| TaqI | TCGA | 4 cut(s) | 36, 147, 535, 570 |
| TasI | AATT | 5 cut(s) | 102, 189, 361, 664, 738 |
| Tru1I | TTAA | 2 cut(s) | 90, 754 |
| Tru9I | TTAA | 2 cut(s) | 90, 754 |
| TseFI | GTSAC | 1 cut(s) | 296 |
| TseI | GCWGC | 1 cut(s) | 277 |
| Tsp45I | GTSAC | 1 cut(s) | 296 |
| TspDTI | ATGAA | 2 cut(s) | 224, 243 |
| TspGWI | ACGGA | 1 cut(s) | 442 |
| Van91I | CCANNNNNTGG | 1 cut(s) | 740 |
| Vha464I | CTTAAG | 1 cut(s) | 89 |
| VneI | GTGCAC | 1 cut(s) | 423 |
| VpaK11BI | GGWCC | 2 cut(s) | 67, 377 |
| XagI | CCTNNNNNAGG | 1 cut(s) | 239 |
| XapI | RAATTY | 1 cut(s) | 102 |
| XbaI | TCTAGA | 1 cut(s) | 697 |
| XceI | RCATGY | 1 cut(s) | 606 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 258 |
| XhoI | CTCGAG | 1 cut(s) | 35 |
| XspI | CTAG | 2 cut(s) | 45, 698 |
| ZraI | GACGTC | 1 cut(s) | 371 |