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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AanI | TTATAA | 2 cut(s) | 906, 951 |
| AarI | CACCTGC | 1 cut(s) | 29 |
| AasI | GACNNNNNNGTC | 1 cut(s) | 1017 |
| Acc36I | ACCTGC | 1 cut(s) | 29 |
| AccB1I | GGYRCC | 1 cut(s) | 1079 |
| AccBSI | CCGCTC | 2 cut(s) | 982, 1032 |
| AccIII | TCCGGA | 1 cut(s) | 147 |
| AciI | CCGC | 6 cut(s) | 14, 82, 162, 982, 1030, 1059 |
| AclWI | GGATC | 2 cut(s) | 402, 431 |
| AcsI | RAATTY | 2 cut(s) | 287, 677 |
| AcuI | CTGAAG | 1 cut(s) | 84 |
| AcyI | GRCGYC | 2 cut(s) | 511, 1080 |
| AfaI | GTAC | 3 cut(s) | 472, 542, 1122 |
| AfiI | CCNNNNNNNGG | 3 cut(s) | 714, 968, 969 |
| AhdI | GACNNNNNGTC | 2 cut(s) | 664, 731 |
| AjiI | CACGTC | 1 cut(s) | 47 |
| AjuI | GAANNNNNNNTTGG | 2 cut(s) | 576, 608 |
| AleI | CACNNNNGTG | 1 cut(s) | 1232 |
| Alw21I | GWGCWC | 1 cut(s) | 459 |
| Alw26I | GTCTC | 2 cut(s) | 784, 1155 |
| AlwI | GGATC | 2 cut(s) | 402, 431 |
| AlwNI | CAGNNNCTG | 1 cut(s) | 131 |
| Aor13HI | TCCGGA | 1 cut(s) | 147 |
| AoxI | GGCC | 2 cut(s) | 914, 1066 |
| ApeKI | GCWGC | 6 cut(s) | 24, 33, 156, 159, 165, 197 |
| ApoI | RAATTY | 2 cut(s) | 287, 677 |
| AseI | ATTAAT | 1 cut(s) | 855 |
| AspLEI | GCGC | 4 cut(s) | 494, 580, 975, 1082 |
| AspS9I | GGNCC | 1 cut(s) | 1019 |
| AsuHPI | GGTGA | 3 cut(s) | 215, 1217, 1219 |
| AsuNHI | GCTAGC | 2 cut(s) | 4, 116 |
| AvaII | GGWCC | 1 cut(s) | 1019 |
| BanI | GGYRCC | 1 cut(s) | 1079 |
| BanII | GRGCYC | 1 cut(s) | 459 |
| BauI | CACGAG | 2 cut(s) | 835, 893 |
| Bbv12I | GWGCWC | 1 cut(s) | 459 |
| BbvI | GCAGC | 6 cut(s) | 11, 45, 168, 171, 177, 209 |
| BccI | CCATC | 5 cut(s) | 228, 242, 257, 1110, 1196 |
| BceAI | ACGGC | 1 cut(s) | 1053 |
| BcoDI | GTCTC | 2 cut(s) | 784, 1155 |
| BfaI | CTAG | 7 cut(s) | 5, 90, 117, 153, 561, 581, 1092 |
| BfmI | CTRYAG | 4 cut(s) | 31, 102, 669, 867 |
| BfoI | RGCGCY | 1 cut(s) | 1083 |
| BfuAI | ACCTGC | 1 cut(s) | 29 |
| Bme18I | GGWCC | 1 cut(s) | 1019 |
| BmeRI | GACNNNNNGTC | 2 cut(s) | 664, 731 |
| BmgBI | CACGTC | 1 cut(s) | 47 |
| BmgT120I | GGNCC | 1 cut(s) | 1019 |
| BmiI | GGNNCC | 3 cut(s) | 986, 1057, 1081 |
| BmsI | GCATC | 3 cut(s) | 547, 1088, 1201 |
| BmtI | GCTAGC | 2 cut(s) | 8, 120 |
| Bpu10I | CCTNAGC | 1 cut(s) | 453 |
| BpuEI | CTTGAG | 1 cut(s) | 419 |
| BsaHI | GRCGYC | 2 cut(s) | 511, 1080 |
| BsaJI | CCNNGG | 2 cut(s) | 1063, 1069 |
| BsaWI | WCCGGW | 1 cut(s) | 147 |
| Bsc4I | CCNNNNNNNGG | 3 cut(s) | 714, 968, 969 |
| Bse1I | ACTGG | 2 cut(s) | 370, 829 |
| Bse3DI | GCAATG | 1 cut(s) | 604 |
| BseAI | TCCGGA | 1 cut(s) | 147 |
| BseDI | CCNNGG | 2 cut(s) | 1063, 1069 |
| BseGI | GGATG | 6 cut(s) | 234, 263, 562, 1052, 1102, 1103 |
| BseLI | CCNNNNNNNGG | 3 cut(s) | 714, 968, 969 |
| BseMI | GCAATG | 1 cut(s) | 604 |
| BseMII | CTCAG | 2 cut(s) | 444, 795 |
| BseNI | ACTGG | 2 cut(s) | 370, 829 |
| BseRI | GAGGAG | 2 cut(s) | 605, 1078 |
| BseXI | GCAGC | 6 cut(s) | 11, 45, 168, 171, 177, 209 |
| BsgI | GTGCAG | 1 cut(s) | 27 |
| BshFI | GGCC | 2 cut(s) | 916, 1068 |
| BshNI | GGYRCC | 1 cut(s) | 1079 |
| BsiHKAI | GWGCWC | 1 cut(s) | 459 |
| BsiSI | CCGG | 1 cut(s) | 148 |
| BslFI | GGGAC | 1 cut(s) | 1014 |
| BslI | CCNNNNNNNGG | 3 cut(s) | 714, 968, 969 |
| BsmAI | GTCTC | 2 cut(s) | 784, 1155 |
| BsmBI | CGTCTC | 1 cut(s) | 784 |
| BsmFI | GGGAC | 1 cut(s) | 1014 |
| BsmI | GAATGC | 1 cut(s) | 143 |
| BsnI | GGCC | 2 cut(s) | 916, 1068 |
| Bsp1286I | GDGCHC | 1 cut(s) | 459 |
| Bsp13I | TCCGGA | 1 cut(s) | 147 |
| Bsp143I | GATC | 3 cut(s) | 394, 423, 831 |
| BspACI | CCGC | 6 cut(s) | 14, 82, 162, 982, 1030, 1059 |
| BspANI | GGCC | 2 cut(s) | 916, 1068 |
| BspCNI | CTCAG | 2 cut(s) | 445, 794 |
| BspEI | TCCGGA | 1 cut(s) | 147 |
| BspLI | GGNNCC | 3 cut(s) | 986, 1057, 1081 |
| BspMAI | CTGCAG | 1 cut(s) | 35 |
| BspMI | ACCTGC | 1 cut(s) | 29 |
| BspOI | GCTAGC | 2 cut(s) | 8, 120 |
| BspPI | GGATC | 2 cut(s) | 402, 431 |
| BspQI | GCTCTTC | 1 cut(s) | 579 |
| BspT107I | GGYRCC | 1 cut(s) | 1079 |
| BsrBI | CCGCTC | 2 cut(s) | 982, 1032 |
| BsrDI | GCAATG | 1 cut(s) | 604 |
| BsrI | ACTGG | 2 cut(s) | 370, 829 |
| BssECI | CCNNGG | 2 cut(s) | 1063, 1069 |
| BssMI | GATC | 3 cut(s) | 394, 423, 831 |
| BssNI | GRCGYC | 2 cut(s) | 511, 1080 |
| BssSI | CACGAG | 2 cut(s) | 835, 893 |
| BssT1I | CCWWGG | 1 cut(s) | 1063 |
| Bst2BI | CACGAG | 2 cut(s) | 835, 893 |
| Bst6I | CTCTTC | 1 cut(s) | 579 |
| BstACI | GRCGYC | 2 cut(s) | 511, 1080 |
| BstC8I | GCNNGC | 6 cut(s) | 6, 56, 86, 95, 118, 490 |
| BstDEI | CTNAG | 3 cut(s) | 453, 781, 927 |
| BstDSI | CCRYGG | 1 cut(s) | 1069 |
| BstF5I | GGATG | 6 cut(s) | 234, 263, 562, 1052, 1102, 1103 |
| BstH2I | RGCGCY | 1 cut(s) | 1083 |
| BstHHI | GCGC | 4 cut(s) | 494, 580, 975, 1082 |
| BstKTI | GATC | 3 cut(s) | 397, 426, 834 |
| BstMAI | GTCTC | 2 cut(s) | 784, 1155 |
| BstMBI | GATC | 3 cut(s) | 394, 423, 831 |
| BstSFI | CTRYAG | 4 cut(s) | 31, 102, 669, 867 |
| BstV1I | GCAGC | 6 cut(s) | 11, 45, 168, 171, 177, 209 |
| BstX2I | RGATCY | 1 cut(s) | 394 |
| BstXI | CCANNNNNNTGG | 1 cut(s) | 1070 |
| BstYI | RGATCY | 1 cut(s) | 394 |
| BsuRI | GGCC | 2 cut(s) | 916, 1068 |
| BtgI | CCRYGG | 1 cut(s) | 1069 |
| BtrI | CACGTC | 1 cut(s) | 47 |
| BtsCI | GGATG | 6 cut(s) | 234, 263, 562, 1052, 1102, 1103 |
| BtsI | GCAGTG | 1 cut(s) | 39 |
| BtsIMutI | CAGTG | 2 cut(s) | 39, 129 |
| BveI | ACCTGC | 1 cut(s) | 29 |
| Cac8I | GCNNGC | 6 cut(s) | 6, 56, 86, 95, 118, 490 |
| CaiI | CAGNNNCTG | 1 cut(s) | 131 |
| CfoI | GCGC | 4 cut(s) | 494, 580, 975, 1082 |
| Cfr13I | GGNCC | 1 cut(s) | 1019 |
| CseI | GACGC | 1 cut(s) | 500 |
| Csp6I | GTAC | 3 cut(s) | 471, 541, 1121 |
| CviAII | CATG | 6 cut(s) | 517, 544, 709, 862, 881, 1175 |
| CviQI | GTAC | 3 cut(s) | 471, 541, 1121 |
| DdeI | CTNAG | 3 cut(s) | 453, 781, 927 |
| DinI | GGCGCC | 1 cut(s) | 1081 |
| DpnI | GATC | 3 cut(s) | 396, 425, 833 |
| DpnII | GATC | 3 cut(s) | 394, 423, 831 |
| DrdI | GACNNNNNNGTC | 1 cut(s) | 1017 |
| DriI | GACNNNNNGTC | 2 cut(s) | 664, 731 |
| DseDI | GACNNNNNNGTC | 1 cut(s) | 1017 |
| Eam1104I | CTCTTC | 1 cut(s) | 579 |
| Eam1105I | GACNNNNNGTC | 2 cut(s) | 664, 731 |
| EarI | CTCTTC | 1 cut(s) | 579 |
| Ecl136II | GAGCTC | 1 cut(s) | 457 |
| Eco130I | CCWWGG | 1 cut(s) | 1063 |
| Eco147I | AGGCCT | 1 cut(s) | 916 |
| Eco24I | GRGCYC | 1 cut(s) | 459 |
| Eco47I | GGWCC | 1 cut(s) | 1019 |
| Eco53kI | GAGCTC | 1 cut(s) | 457 |
| Eco57I | CTGAAG | 1 cut(s) | 84 |
| EcoICRI | GAGCTC | 1 cut(s) | 457 |
| EcoRI | GAATTC | 1 cut(s) | 287 |
| EcoT14I | CCWWGG | 1 cut(s) | 1063 |
| EcoT38I | GRGCYC | 1 cut(s) | 459 |
| EgeI | GGCGCC | 1 cut(s) | 1081 |
| EheI | GGCGCC | 1 cut(s) | 1081 |
| ErhI | CCWWGG | 1 cut(s) | 1063 |
| Esp3I | CGTCTC | 1 cut(s) | 784 |
| FaeI | CATG | 6 cut(s) | 520, 547, 712, 865, 884, 1178 |
| FalI | AAGNNNNNCTT | 4 cut(s) | 329, 361, 1170, 1202 |
| FaqI | GGGAC | 1 cut(s) | 1014 |
| FatI | CATG | 6 cut(s) | 516, 543, 708, 861, 880, 1174 |
| FokI | GGATG | 6 cut(s) | 221, 250, 569, 1059, 1089, 1110 |
| FriOI | GRGCYC | 1 cut(s) | 459 |
| FspBI | CTAG | 7 cut(s) | 5, 90, 117, 153, 561, 581, 1092 |
| GlaI | GCGC | 4 cut(s) | 493, 579, 974, 1081 |
| HaeII | RGCGCY | 1 cut(s) | 1083 |
| HaeIII | GGCC | 2 cut(s) | 916, 1068 |
| HapII | CCGG | 1 cut(s) | 148 |
| HgaI | GACGC | 1 cut(s) | 500 |
| HhaI | GCGC | 4 cut(s) | 494, 580, 975, 1082 |
| Hin1I | GRCGYC | 2 cut(s) | 511, 1080 |
| Hin1II | CATG | 6 cut(s) | 520, 547, 712, 865, 884, 1178 |
| Hin6I | GCGC | 4 cut(s) | 492, 578, 973, 1080 |
| HinP1I | GCGC | 4 cut(s) | 492, 578, 973, 1080 |
| HindIII | AAGCTT | 2 cut(s) | 308, 338 |
| HinfI | GANTC | 5 cut(s) | 295, 359, 608, 651, 1268 |
| HpaII | CCGG | 1 cut(s) | 148 |
| HphI | GGTGA | 3 cut(s) | 215, 1217, 1219 |
| Hpy166II | GTNNAC | 2 cut(s) | 725, 1237 |
| Hpy188I | TCNGA | 5 cut(s) | 76, 533, 688, 923, 1249 |
| Hpy188III | TCNNGA | 8 cut(s) | 148, 284, 292, 398, 502, 835, 895, 938 |
| Hpy8I | GTNNAC | 2 cut(s) | 725, 1237 |
| HpyAV | CCTTC | 4 cut(s) | 120, 179, 781, 1037 |
| HpyCH4IV | ACGT | 3 cut(s) | 46, 1012, 1218 |
| HpyCH4V | TGCA | 7 cut(s) | 33, 44, 187, 959, 1112, 1261, 1274 |
| HpyF3I | CTNAG | 3 cut(s) | 453, 781, 927 |
| HpySE526I | ACGT | 3 cut(s) | 46, 1012, 1218 |
| Hsp92I | GRCGYC | 2 cut(s) | 511, 1080 |
| Hsp92II | CATG | 6 cut(s) | 520, 547, 712, 865, 884, 1178 |
| HspAI | GCGC | 4 cut(s) | 492, 578, 973, 1080 |
| KasI | GGCGCC | 1 cut(s) | 1079 |
| Kpn2I | TCCGGA | 1 cut(s) | 147 |
| Kzo9I | GATC | 3 cut(s) | 394, 423, 831 |
| LguI | GCTCTTC | 1 cut(s) | 579 |
| LmnI | GCTCC | 6 cut(s) | 112, 276, 462, 639, 979, 1055 |
| Lsp1109I | GCAGC | 6 cut(s) | 11, 45, 168, 171, 177, 209 |
| LweI | GCATC | 3 cut(s) | 547, 1088, 1201 |
| MaeI | CTAG | 7 cut(s) | 5, 90, 117, 153, 561, 581, 1092 |
| MaeII | ACGT | 3 cut(s) | 46, 1012, 1218 |
| MaeIII | GTNAC | 3 cut(s) | 388, 512, 733 |
| MalI | GATC | 3 cut(s) | 396, 425, 833 |
| MbiI | CCGCTC | 2 cut(s) | 982, 1032 |
| MboI | GATC | 3 cut(s) | 394, 423, 831 |
| MboII | GAAGA | 5 cut(s) | 596, 910, 1205, 1208, 1211 |
| MflI | RGATCY | 1 cut(s) | 394 |
| MhlI | GDGCHC | 1 cut(s) | 459 |
| Mly113I | GGCGCC | 1 cut(s) | 1080 |
| MlyI | GAGTC | 2 cut(s) | 353, 602 |
| MmeI | TCCRAC | 1 cut(s) | 901 |
| MroI | TCCGGA | 1 cut(s) | 147 |
| MseI | TTAA | 4 cut(s) | 318, 681, 855, 1130 |
| MslI | CAYNNNNRTG | 3 cut(s) | 503, 1107, 1232 |
| MspA1I | CMGCKG | 1 cut(s) | 162 |
| MspI | CCGG | 1 cut(s) | 148 |
| Mva1269I | GAATGC | 1 cut(s) | 143 |
| NarI | GGCGCC | 1 cut(s) | 1080 |
| NdeII | GATC | 3 cut(s) | 394, 423, 831 |
| NheI | GCTAGC | 2 cut(s) | 4, 116 |
| NlaIII | CATG | 6 cut(s) | 520, 547, 712, 865, 884, 1178 |
| NlaIV | GGNNCC | 3 cut(s) | 986, 1057, 1081 |
| NmeAIII | GCCGAG | 1 cut(s) | 173 |
| NmuCI | GTSAC | 3 cut(s) | 388, 512, 733 |
| OliI | CACNNNNGTG | 1 cut(s) | 1232 |
| PaqCI | CACCTGC | 1 cut(s) | 29 |
| PceI | AGGCCT | 1 cut(s) | 916 |
| PciSI | GCTCTTC | 1 cut(s) | 579 |
| PctI | GAATGC | 1 cut(s) | 143 |
| PfeI | GAWTC | 3 cut(s) | 295, 651, 1268 |
| PleI | GAGTC | 2 cut(s) | 353, 602 |
| PluTI | GGCGCC | 1 cut(s) | 1083 |
| PpsI | GAGTC | 2 cut(s) | 353, 602 |
| PshBI | ATTAAT | 1 cut(s) | 855 |
| PsiI | TTATAA | 2 cut(s) | 906, 951 |
| Psp124BI | GAGCTC | 1 cut(s) | 459 |
| PspN4I | GGNNCC | 3 cut(s) | 986, 1057, 1081 |
| PspPI | GGNCC | 1 cut(s) | 1019 |
| PstI | CTGCAG | 1 cut(s) | 35 |
| PstNI | CAGNNNCTG | 1 cut(s) | 131 |
| PsuI | RGATCY | 1 cut(s) | 394 |
| RsaI | GTAC | 3 cut(s) | 472, 542, 1122 |
| RsaNI | GTAC | 3 cut(s) | 471, 541, 1121 |
| RseI | CAYNNNNRTG | 3 cut(s) | 503, 1107, 1232 |
| SacI | GAGCTC | 1 cut(s) | 459 |
| SapI | GCTCTTC | 1 cut(s) | 579 |
| SaqAI | TTAA | 4 cut(s) | 318, 681, 855, 1130 |
| Sau3AI | GATC | 3 cut(s) | 394, 423, 831 |
| Sau96I | GGNCC | 1 cut(s) | 1019 |
| SchI | GAGTC | 2 cut(s) | 353, 602 |
| SduI | GDGCHC | 1 cut(s) | 459 |
| SfaNI | GCATC | 3 cut(s) | 547, 1088, 1201 |
| SfcI | CTRYAG | 4 cut(s) | 31, 102, 669, 867 |
| SfoI | GGCGCC | 1 cut(s) | 1081 |
| SinI | GGWCC | 1 cut(s) | 1019 |
| SmiMI | CAYNNNNRTG | 3 cut(s) | 503, 1107, 1232 |
| SmlI | CTYRAG | 1 cut(s) | 398 |
| SmoI | CTYRAG | 1 cut(s) | 398 |
| SseBI | AGGCCT | 1 cut(s) | 916 |
| SsiI | CCGC | 6 cut(s) | 14, 82, 162, 982, 1030, 1059 |
| SspDI | GGCGCC | 1 cut(s) | 1079 |
| SspMI | CTAG | 7 cut(s) | 5, 90, 117, 153, 561, 581, 1092 |
| SstI | GAGCTC | 1 cut(s) | 459 |
| StuI | AGGCCT | 1 cut(s) | 916 |
| StyI | CCWWGG | 1 cut(s) | 1063 |
| TaiI | ACGT | 3 cut(s) | 49, 1015, 1221 |
| TaqI | TCGA | 2 cut(s) | 329, 808 |
| TaqII | GACCGA | 1 cut(s) | 162 |
| TatI | WGTACW | 1 cut(s) | 540 |
| TauI | GCSGC | 4 cut(s) | 16, 84, 165, 1061 |
| TfiI | GAWTC | 3 cut(s) | 295, 651, 1268 |
| Tru1I | TTAA | 4 cut(s) | 318, 681, 855, 1130 |
| Tru9I | TTAA | 4 cut(s) | 318, 681, 855, 1130 |
| TscAI | CASTG | 2 cut(s) | 46, 136 |
| TseFI | GTSAC | 3 cut(s) | 388, 512, 733 |
| TseI | GCWGC | 6 cut(s) | 24, 33, 156, 159, 165, 197 |
| Tsp45I | GTSAC | 3 cut(s) | 388, 512, 733 |
| TspDTI | ATGAA | 3 cut(s) | 494, 833, 1191 |
| TspGWI | ACGGA | 3 cut(s) | 407, 1023, 1167 |
| TspRI | CASTG | 2 cut(s) | 46, 136 |
| VpaK11BI | GGWCC | 1 cut(s) | 1019 |
| VspI | ATTAAT | 1 cut(s) | 855 |
| XapI | RAATTY | 2 cut(s) | 287, 677 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 136 |
| XspI | CTAG | 7 cut(s) | 5, 90, 117, 153, 561, 581, 1092 |