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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccB1I | GGYRCC | 2 cut(s) | 392, 473 |
| AciI | CCGC | 2 cut(s) | 145, 396 |
| AclWI | GGATC | 1 cut(s) | 335 |
| AcsI | RAATTY | 2 cut(s) | 212, 541 |
| AcyI | GRCGYC | 2 cut(s) | 456, 474 |
| AfaI | GTAC | 1 cut(s) | 32 |
| AfiI | CCNNNNNNNGG | 1 cut(s) | 418 |
| AflII | CTTAAG | 1 cut(s) | 527 |
| AgsI | TTSAA | 3 cut(s) | 80, 160, 509 |
| AluBI | AGCT | 4 cut(s) | 346, 356, 415, 515 |
| AluI | AGCT | 4 cut(s) | 346, 356, 415, 515 |
| Alw21I | GWGCWC | 2 cut(s) | 190, 348 |
| Alw26I | GTCTC | 3 cut(s) | 76, 280, 436 |
| AlwI | GGATC | 1 cut(s) | 335 |
| ApeKI | GCWGC | 1 cut(s) | 488 |
| ApoI | RAATTY | 2 cut(s) | 212, 541 |
| AspA2I | CCTAGG | 1 cut(s) | 478 |
| AspLEI | GCGC | 1 cut(s) | 476 |
| AsuHPI | GGTGA | 3 cut(s) | 479, 487, 494 |
| AvrII | CCTAGG | 1 cut(s) | 478 |
| BanI | GGYRCC | 2 cut(s) | 392, 473 |
| BanII | GRGCYC | 2 cut(s) | 57, 348 |
| BbsI | GAAGAC | 1 cut(s) | 260 |
| Bbv12I | GWGCWC | 2 cut(s) | 190, 348 |
| BbvI | GCAGC | 1 cut(s) | 475 |
| BccI | CCATC | 4 cut(s) | 126, 280, 446, 468 |
| BcoDI | GTCTC | 3 cut(s) | 76, 280, 436 |
| BfaI | CTAG | 2 cut(s) | 122, 479 |
| BfoI | RGCGCY | 1 cut(s) | 477 |
| BfrI | CTTAAG | 1 cut(s) | 527 |
| BisI | GCNGC | 1 cut(s) | 489 |
| BlnI | CCTAGG | 1 cut(s) | 478 |
| BlsI | GCNGC | 1 cut(s) | 490 |
| BmiI | GGNNCC | 2 cut(s) | 394, 475 |
| BmsI | GCATC | 2 cut(s) | 433, 475 |
| BpiI | GAAGAC | 1 cut(s) | 260 |
| BpmI | CTGGAG | 1 cut(s) | 11 |
| Bpu10I | CCTNAGC | 1 cut(s) | 416 |
| Bsa29I | ATCGAT | 1 cut(s) | 309 |
| BsaHI | GRCGYC | 2 cut(s) | 456, 474 |
| BsaI | GGTCTC | 1 cut(s) | 76 |
| BsaJI | CCNNGG | 3 cut(s) | 388, 447, 478 |
| Bsc4I | CCNNNNNNNGG | 1 cut(s) | 418 |
| Bse1I | ACTGG | 1 cut(s) | 28 |
| BseCI | ATCGAT | 1 cut(s) | 309 |
| BseDI | CCNNGG | 3 cut(s) | 388, 447, 478 |
| BseGI | GGATG | 3 cut(s) | 22, 384, 457 |
| BseLI | CCNNNNNNNGG | 1 cut(s) | 418 |
| BseMII | CTCAG | 1 cut(s) | 195 |
| BseNI | ACTGG | 1 cut(s) | 28 |
| BseXI | GCAGC | 1 cut(s) | 475 |
| BsgI | GTGCAG | 1 cut(s) | 447 |
| BshNI | GGYRCC | 2 cut(s) | 392, 473 |
| BshVI | ATCGAT | 1 cut(s) | 309 |
| BsiHKAI | GWGCWC | 2 cut(s) | 190, 348 |
| BslI | CCNNNNNNNGG | 1 cut(s) | 418 |
| BsmAI | GTCTC | 3 cut(s) | 76, 280, 436 |
| BsmBI | CGTCTC | 1 cut(s) | 280 |
| Bso31I | GGTCTC | 1 cut(s) | 76 |
| Bsp1286I | GDGCHC | 3 cut(s) | 57, 190, 348 |
| Bsp143I | GATC | 2 cut(s) | 228, 327 |
| Bsp19I | CCATGG | 1 cut(s) | 447 |
| BspACI | CCGC | 2 cut(s) | 145, 396 |
| BspCNI | CTCAG | 1 cut(s) | 194 |
| BspDI | ATCGAT | 1 cut(s) | 309 |
| BspHI | TCATGA | 1 cut(s) | 340 |
| BspLI | GGNNCC | 2 cut(s) | 394, 475 |
| BspPI | GGATC | 1 cut(s) | 335 |
| BspT107I | GGYRCC | 2 cut(s) | 392, 473 |
| BspTI | CTTAAG | 1 cut(s) | 527 |
| BspTNI | GGTCTC | 1 cut(s) | 76 |
| BsrI | ACTGG | 1 cut(s) | 28 |
| BssECI | CCNNGG | 3 cut(s) | 388, 447, 478 |
| BssMI | GATC | 2 cut(s) | 228, 327 |
| BssNI | GRCGYC | 2 cut(s) | 456, 474 |
| BssT1I | CCWWGG | 3 cut(s) | 388, 447, 478 |
| BstACI | GRCGYC | 2 cut(s) | 456, 474 |
| BstAFI | CTTAAG | 1 cut(s) | 527 |
| BstDEI | CTNAG | 3 cut(s) | 181, 294, 416 |
| BstDSI | CCRYGG | 1 cut(s) | 447 |
| BstF5I | GGATG | 3 cut(s) | 22, 384, 457 |
| BstH2I | RGCGCY | 1 cut(s) | 477 |
| BstHHI | GCGC | 1 cut(s) | 476 |
| BstKTI | GATC | 2 cut(s) | 231, 330 |
| BstMAI | GTCTC | 3 cut(s) | 76, 280, 436 |
| BstMBI | GATC | 2 cut(s) | 228, 327 |
| BstV1I | GCAGC | 1 cut(s) | 475 |
| BstV2I | GAAGAC | 1 cut(s) | 260 |
| Bsu15I | ATCGAT | 1 cut(s) | 309 |
| BsuTUI | ATCGAT | 1 cut(s) | 309 |
| BtgI | CCRYGG | 1 cut(s) | 447 |
| BtgZI | GCGATG | 1 cut(s) | 254 |
| BtsCI | GGATG | 3 cut(s) | 22, 384, 457 |
| CciI | TCATGA | 1 cut(s) | 340 |
| CfoI | GCGC | 1 cut(s) | 476 |
| ClaI | ATCGAT | 1 cut(s) | 309 |
| CseI | GACGC | 2 cut(s) | 445, 532 |
| Csp6I | GTAC | 1 cut(s) | 31 |
| CviAII | CATG | 5 cut(s) | 341, 377, 440, 448, 464 |
| CviQI | GTAC | 1 cut(s) | 31 |
| DdeI | CTNAG | 3 cut(s) | 181, 294, 416 |
| DinI | GGCGCC | 1 cut(s) | 475 |
| DpnI | GATC | 2 cut(s) | 230, 329 |
| DpnII | GATC | 2 cut(s) | 228, 327 |
| Ecl136II | GAGCTC | 1 cut(s) | 346 |
| Eco130I | CCWWGG | 3 cut(s) | 388, 447, 478 |
| Eco24I | GRGCYC | 2 cut(s) | 57, 348 |
| Eco31I | GGTCTC | 1 cut(s) | 76 |
| Eco53kI | GAGCTC | 1 cut(s) | 346 |
| EcoICRI | GAGCTC | 1 cut(s) | 346 |
| EcoT14I | CCWWGG | 3 cut(s) | 388, 447, 478 |
| EcoT38I | GRGCYC | 2 cut(s) | 57, 348 |
| EgeI | GGCGCC | 1 cut(s) | 475 |
| EheI | GGCGCC | 1 cut(s) | 475 |
| ErhI | CCWWGG | 3 cut(s) | 388, 447, 478 |
| Esp3I | CGTCTC | 1 cut(s) | 280 |
| FaeI | CATG | 5 cut(s) | 344, 380, 443, 451, 467 |
| FatI | CATG | 5 cut(s) | 340, 376, 439, 447, 463 |
| FauNDI | CATATG | 2 cut(s) | 12, 235 |
| Fnu4HI | GCNGC | 1 cut(s) | 489 |
| FokI | GGATG | 3 cut(s) | 29, 371, 464 |
| FriOI | GRGCYC | 2 cut(s) | 57, 348 |
| Fsp4HI | GCNGC | 1 cut(s) | 489 |
| FspBI | CTAG | 2 cut(s) | 122, 479 |
| GlaI | GCGC | 1 cut(s) | 475 |
| GluI | GCNGC | 1 cut(s) | 489 |
| GsuI | CTGGAG | 1 cut(s) | 11 |
| HaeII | RGCGCY | 1 cut(s) | 477 |
| HgaI | GACGC | 2 cut(s) | 445, 532 |
| HhaI | GCGC | 1 cut(s) | 476 |
| Hin1I | GRCGYC | 2 cut(s) | 456, 474 |
| Hin1II | CATG | 5 cut(s) | 344, 380, 443, 451, 467 |
| Hin6I | GCGC | 1 cut(s) | 474 |
| HinP1I | GCGC | 1 cut(s) | 474 |
| HinfI | GANTC | 5 cut(s) | 4, 20, 104, 256, 306 |
| HphI | GGTGA | 3 cut(s) | 479, 487, 494 |
| Hpy166II | GTNNAC | 1 cut(s) | 406 |
| Hpy188I | TCNGA | 1 cut(s) | 522 |
| Hpy188III | TCNNGA | 4 cut(s) | 116, 170, 183, 341 |
| Hpy8I | GTNNAC | 1 cut(s) | 406 |
| HpyAV | CCTTC | 3 cut(s) | 54, 277, 464 |
| HpyCH4V | TGCA | 3 cut(s) | 281, 428, 491 |
| HpyF3I | CTNAG | 3 cut(s) | 181, 294, 416 |
| Hsp92I | GRCGYC | 2 cut(s) | 456, 474 |
| Hsp92II | CATG | 5 cut(s) | 344, 380, 443, 451, 467 |
| HspAI | GCGC | 1 cut(s) | 474 |
| KasI | GGCGCC | 1 cut(s) | 473 |
| Kzo9I | GATC | 2 cut(s) | 228, 327 |
| LmnI | GCTCC | 3 cut(s) | 30, 185, 353 |
| LpnPI | CCDG | 8 cut(s) | 41, 70, 122, 129, 168, 306, 408, 425 |
| Lsp1109I | GCAGC | 1 cut(s) | 475 |
| LweI | GCATC | 2 cut(s) | 433, 475 |
| MaeI | CTAG | 2 cut(s) | 122, 479 |
| MaeIII | GTNAC | 1 cut(s) | 316 |
| MalI | GATC | 2 cut(s) | 230, 329 |
| MboI | GATC | 2 cut(s) | 228, 327 |
| MboII | GAAGA | 2 cut(s) | 92, 265 |
| MhlI | GDGCHC | 3 cut(s) | 57, 190, 348 |
| MluCI | AATT | 3 cut(s) | 212, 298, 541 |
| Mly113I | GGCGCC | 1 cut(s) | 474 |
| MlyI | GAGTC | 2 cut(s) | 98, 250 |
| MnlI | CCTC | 3 cut(s) | 152, 409, 576 |
| MseI | TTAA | 3 cut(s) | 198, 206, 528 |
| MslI | CAYNNNNRTG | 2 cut(s) | 15, 465 |
| MspCI | CTTAAG | 1 cut(s) | 527 |
| NarI | GGCGCC | 1 cut(s) | 474 |
| NcoI | CCATGG | 1 cut(s) | 447 |
| NdeI | CATATG | 2 cut(s) | 12, 235 |
| NdeII | GATC | 2 cut(s) | 228, 327 |
| NlaIII | CATG | 5 cut(s) | 344, 380, 443, 451, 467 |
| NlaIV | GGNNCC | 2 cut(s) | 394, 475 |
| PagI | TCATGA | 1 cut(s) | 340 |
| PfeI | GAWTC | 2 cut(s) | 20, 306 |
| PkrI | GCNGC | 1 cut(s) | 490 |
| PleI | GAGTC | 2 cut(s) | 98, 250 |
| PluTI | GGCGCC | 1 cut(s) | 477 |
| PpsI | GAGTC | 2 cut(s) | 98, 250 |
| Psp124BI | GAGCTC | 1 cut(s) | 348 |
| PspN4I | GGNNCC | 2 cut(s) | 394, 475 |
| RsaI | GTAC | 1 cut(s) | 32 |
| RsaNI | GTAC | 1 cut(s) | 31 |
| RseI | CAYNNNNRTG | 2 cut(s) | 15, 465 |
| SacI | GAGCTC | 1 cut(s) | 348 |
| SaqAI | TTAA | 3 cut(s) | 198, 206, 528 |
| SatI | GCNGC | 1 cut(s) | 489 |
| Sau3AI | GATC | 2 cut(s) | 228, 327 |
| SchI | GAGTC | 2 cut(s) | 98, 250 |
| SduI | GDGCHC | 3 cut(s) | 57, 190, 348 |
| SetI | ASST | 9 cut(s) | 65, 123, 269, 338, 348, 358, 417, 484, 517 |
| SfaNI | GCATC | 2 cut(s) | 433, 475 |
| SfoI | GGCGCC | 1 cut(s) | 475 |
| SmiMI | CAYNNNNRTG | 2 cut(s) | 15, 465 |
| SmlI | CTYRAG | 1 cut(s) | 527 |
| SmoI | CTYRAG | 1 cut(s) | 527 |
| Sse9I | AATT | 3 cut(s) | 212, 298, 541 |
| SsiI | CCGC | 2 cut(s) | 145, 396 |
| SspDI | GGCGCC | 1 cut(s) | 473 |
| SspMI | CTAG | 2 cut(s) | 122, 479 |
| SstI | GAGCTC | 1 cut(s) | 348 |
| StyI | CCWWGG | 3 cut(s) | 388, 447, 478 |
| TaqI | TCGA | 2 cut(s) | 304, 309 |
| TasI | AATT | 3 cut(s) | 212, 298, 541 |
| TfiI | GAWTC | 2 cut(s) | 20, 306 |
| Tru1I | TTAA | 3 cut(s) | 198, 206, 528 |
| Tru9I | TTAA | 3 cut(s) | 198, 206, 528 |
| TseI | GCWGC | 1 cut(s) | 488 |
| TspDTI | ATGAA | 5 cut(s) | 56, 60, 224, 329, 374 |
| TspGWI | ACGGA | 3 cut(s) | 340, 391, 582 |
| Vha464I | CTTAAG | 1 cut(s) | 527 |
| XapI | RAATTY | 2 cut(s) | 212, 541 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 419 |
| XmaJI | CCTAGG | 1 cut(s) | 478 |
| XspI | CTAG | 2 cut(s) | 122, 479 |