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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AanI | TTATAA | 1 cut(s) | 396 |
| AccII | CGCG | 1 cut(s) | 447 |
| AciI | CCGC | 2 cut(s) | 48, 428 |
| AclI | AACGTT | 1 cut(s) | 189 |
| AfaI | GTAC | 1 cut(s) | 131 |
| AfiI | CCNNNNNNNGG | 2 cut(s) | 458, 529 |
| AjiI | CACGTC | 1 cut(s) | 268 |
| AjnI | CCWGG | 1 cut(s) | 201 |
| AluBI | AGCT | 6 cut(s) | 44, 68, 89, 157, 340, 362 |
| AluI | AGCT | 6 cut(s) | 44, 68, 89, 157, 340, 362 |
| Alw26I | GTCTC | 1 cut(s) | 274 |
| Ama87I | CYCGRG | 1 cut(s) | 170 |
| ApeKI | GCWGC | 1 cut(s) | 175 |
| AspLEI | GCGC | 2 cut(s) | 449, 465 |
| AspS9I | GGNCC | 2 cut(s) | 145, 509 |
| AsuHPI | GGTGA | 1 cut(s) | 512 |
| AvaI | CYCGRG | 1 cut(s) | 170 |
| AvaII | GGWCC | 2 cut(s) | 145, 509 |
| AxyI | CCTNAGG | 1 cut(s) | 453 |
| BbsI | GAAGAC | 1 cut(s) | 254 |
| BbvI | GCAGC | 1 cut(s) | 187 |
| BccI | CCATC | 1 cut(s) | 104 |
| BciT130I | CCWGG | 1 cut(s) | 203 |
| BcoDI | GTCTC | 1 cut(s) | 274 |
| BfaI | CTAG | 2 cut(s) | 150, 402 |
| BfmI | CTRYAG | 1 cut(s) | 439 |
| BisI | GCNGC | 1 cut(s) | 176 |
| BlsI | GCNGC | 1 cut(s) | 177 |
| Bme1390I | CCNGG | 1 cut(s) | 203 |
| Bme18I | GGWCC | 2 cut(s) | 145, 509 |
| BmeT110I | CYCGRG | 1 cut(s) | 170 |
| BmgBI | CACGTC | 1 cut(s) | 268 |
| BmgT120I | GGNCC | 2 cut(s) | 145, 509 |
| BmiI | GGNNCC | 4 cut(s) | 147, 207, 349, 415 |
| BmrFI | CCNGG | 1 cut(s) | 203 |
| BmsI | GCATC | 1 cut(s) | 330 |
| BpiI | GAAGAC | 1 cut(s) | 254 |
| BsaBI | GATNNNNATC | 1 cut(s) | 239 |
| BsaJI | CCNNGG | 2 cut(s) | 201, 408 |
| Bsc4I | CCNNNNNNNGG | 2 cut(s) | 458, 529 |
| Bse21I | CCTNAGG | 1 cut(s) | 453 |
| Bse8I | GATNNNNATC | 1 cut(s) | 239 |
| BseBI | CCWGG | 1 cut(s) | 203 |
| BseDI | CCNNGG | 2 cut(s) | 201, 408 |
| BseGI | GGATG | 1 cut(s) | 506 |
| BseJI | GATNNNNATC | 1 cut(s) | 239 |
| BseLI | CCNNNNNNNGG | 2 cut(s) | 458, 529 |
| BseRI | GAGGAG | 1 cut(s) | 24 |
| BseXI | GCAGC | 1 cut(s) | 187 |
| Bsh1236I | CGCG | 1 cut(s) | 447 |
| BsiHKCI | CYCGRG | 1 cut(s) | 170 |
| BslI | CCNNNNNNNGG | 2 cut(s) | 458, 529 |
| BsmAI | GTCTC | 1 cut(s) | 274 |
| BsmBI | CGTCTC | 1 cut(s) | 274 |
| BsoBI | CYCGRG | 1 cut(s) | 170 |
| Bsp143I | GATC | 2 cut(s) | 3, 240 |
| Bsp19I | CCATGG | 1 cut(s) | 408 |
| BspACI | CCGC | 2 cut(s) | 48, 428 |
| BspFNI | CGCG | 1 cut(s) | 447 |
| BspHI | TCATGA | 2 cut(s) | 105, 334 |
| BspLI | GGNNCC | 4 cut(s) | 147, 207, 349, 415 |
| BssECI | CCNNGG | 2 cut(s) | 201, 408 |
| BssMI | GATC | 2 cut(s) | 3, 240 |
| BssT1I | CCWWGG | 1 cut(s) | 408 |
| Bst2UI | CCWGG | 1 cut(s) | 203 |
| BstDEI | CTNAG | 1 cut(s) | 453 |
| BstDSI | CCRYGG | 1 cut(s) | 408 |
| BstENI | CCTNNNNNAGG | 1 cut(s) | 456 |
| BstF5I | GGATG | 1 cut(s) | 506 |
| BstFNI | CGCG | 1 cut(s) | 447 |
| BstHHI | GCGC | 2 cut(s) | 449, 465 |
| BstKTI | GATC | 2 cut(s) | 6, 243 |
| BstMAI | GTCTC | 1 cut(s) | 274 |
| BstMBI | GATC | 2 cut(s) | 3, 240 |
| BstMWI | GCNNNNNNNGC | 3 cut(s) | 56, 65, 469 |
| BstNI | CCWGG | 1 cut(s) | 203 |
| BstNSI | RCATGY | 1 cut(s) | 28 |
| BstSCI | CCNGG | 1 cut(s) | 201 |
| BstSFI | CTRYAG | 1 cut(s) | 439 |
| BstUI | CGCG | 1 cut(s) | 447 |
| BstV1I | GCAGC | 1 cut(s) | 187 |
| BstV2I | GAAGAC | 1 cut(s) | 254 |
| Bsu36I | CCTNAGG | 1 cut(s) | 453 |
| BtgI | CCRYGG | 1 cut(s) | 408 |
| BtrI | CACGTC | 1 cut(s) | 268 |
| BtsCI | GGATG | 1 cut(s) | 506 |
| CciI | TCATGA | 2 cut(s) | 105, 334 |
| CfoI | GCGC | 2 cut(s) | 449, 465 |
| Cfr13I | GGNCC | 2 cut(s) | 145, 509 |
| CseI | GACGC | 1 cut(s) | 327 |
| Csp6I | GTAC | 1 cut(s) | 130 |
| CviAII | CATG | 7 cut(s) | 25, 106, 118, 335, 352, 371, 409 |
| CviJI | RGCY | 9 cut(s) | 13, 44, 68, 89, 95, 157, 340, 350, 362 |
| CviKI_1 | RGCY | 9 cut(s) | 13, 44, 68, 89, 95, 157, 340, 350, 362 |
| CviQI | GTAC | 1 cut(s) | 130 |
| DdeI | CTNAG | 1 cut(s) | 453 |
| DpnI | GATC | 2 cut(s) | 5, 242 |
| DpnII | GATC | 2 cut(s) | 3, 240 |
| DraI | TTTAAA | 1 cut(s) | 216 |
| Eco130I | CCWWGG | 1 cut(s) | 408 |
| Eco47I | GGWCC | 2 cut(s) | 145, 509 |
| Eco81I | CCTNAGG | 1 cut(s) | 453 |
| Eco88I | CYCGRG | 1 cut(s) | 170 |
| EcoNI | CCTNNNNNAGG | 1 cut(s) | 456 |
| EcoO109I | RGGNCCY | 1 cut(s) | 145 |
| EcoRII | CCWGG | 1 cut(s) | 201 |
| EcoT14I | CCWWGG | 1 cut(s) | 408 |
| ErhI | CCWWGG | 1 cut(s) | 408 |
| Esp3I | CGTCTC | 1 cut(s) | 274 |
| FaeI | CATG | 7 cut(s) | 28, 109, 121, 338, 355, 374, 412 |
| FatI | CATG | 7 cut(s) | 24, 105, 117, 334, 351, 370, 408 |
| Fnu4HI | GCNGC | 1 cut(s) | 176 |
| FokI | GGATG | 1 cut(s) | 513 |
| Fsp4HI | GCNGC | 1 cut(s) | 176 |
| FspBI | CTAG | 2 cut(s) | 150, 402 |
| GlaI | GCGC | 2 cut(s) | 448, 464 |
| GluI | GCNGC | 1 cut(s) | 176 |
| HgaI | GACGC | 1 cut(s) | 327 |
| HhaI | GCGC | 2 cut(s) | 449, 465 |
| Hin1II | CATG | 7 cut(s) | 28, 109, 121, 338, 355, 374, 412 |
| Hin6I | GCGC | 2 cut(s) | 447, 463 |
| HinP1I | GCGC | 2 cut(s) | 447, 463 |
| HinfI | GANTC | 3 cut(s) | 197, 250, 431 |
| HphI | GGTGA | 1 cut(s) | 512 |
| Hpy166II | GTNNAC | 1 cut(s) | 82 |
| Hpy188I | TCNGA | 3 cut(s) | 21, 300, 317 |
| Hpy188III | TCNNGA | 5 cut(s) | 106, 209, 244, 335, 402 |
| Hpy8I | GTNNAC | 1 cut(s) | 82 |
| HpyAV | CCTTC | 2 cut(s) | 271, 527 |
| HpyCH4IV | ACGT | 2 cut(s) | 189, 267 |
| HpyCH4V | TGCA | 2 cut(s) | 275, 287 |
| HpyF10VI | GCNNNNNNNGC | 3 cut(s) | 56, 65, 469 |
| HpyF3I | CTNAG | 1 cut(s) | 453 |
| HpySE526I | ACGT | 2 cut(s) | 189, 267 |
| Hsp92II | CATG | 7 cut(s) | 28, 109, 121, 338, 355, 374, 412 |
| HspAI | GCGC | 2 cut(s) | 447, 463 |
| Kzo9I | GATC | 2 cut(s) | 3, 240 |
| LmnI | GCTCC | 2 cut(s) | 347, 469 |
| LpnPI | CCDG | 3 cut(s) | 188, 215, 222 |
| Lsp1109I | GCAGC | 1 cut(s) | 187 |
| LweI | GCATC | 1 cut(s) | 330 |
| MaeI | CTAG | 2 cut(s) | 150, 402 |
| MaeII | ACGT | 2 cut(s) | 189, 267 |
| MaeIII | GTNAC | 1 cut(s) | 194 |
| MalI | GATC | 2 cut(s) | 5, 242 |
| MboI | GATC | 2 cut(s) | 3, 240 |
| MboII | GAAGA | 2 cut(s) | 259, 400 |
| MluCI | AATT | 3 cut(s) | 292, 391, 493 |
| MlyI | GAGTC | 3 cut(s) | 191, 244, 440 |
| MmeI | TCCRAC | 1 cut(s) | 295 |
| MnlI | CCTC | 4 cut(s) | 45, 143, 452, 523 |
| MseI | TTAA | 1 cut(s) | 215 |
| MslI | CAYNNNNRTG | 2 cut(s) | 104, 383 |
| MspR9I | CCNGG | 1 cut(s) | 203 |
| MvaI | CCWGG | 1 cut(s) | 203 |
| MvnI | CGCG | 1 cut(s) | 447 |
| MwoI | GCNNNNNNNGC | 3 cut(s) | 56, 65, 469 |
| NcoI | CCATGG | 1 cut(s) | 408 |
| NdeII | GATC | 2 cut(s) | 3, 240 |
| NlaIII | CATG | 7 cut(s) | 28, 109, 121, 338, 355, 374, 412 |
| NlaIV | GGNNCC | 4 cut(s) | 147, 207, 349, 415 |
| NmuCI | GTSAC | 1 cut(s) | 194 |
| NspI | RCATGY | 1 cut(s) | 28 |
| PaeR7I | CTCGAG | 1 cut(s) | 170 |
| PagI | TCATGA | 2 cut(s) | 105, 334 |
| PkrI | GCNGC | 1 cut(s) | 177 |
| PleI | GAGTC | 3 cut(s) | 191, 244, 439 |
| PpsI | GAGTC | 3 cut(s) | 191, 244, 439 |
| PpuMI | RGGWCCY | 1 cut(s) | 145 |
| PsiI | TTATAA | 1 cut(s) | 396 |
| Psp1406I | AACGTT | 1 cut(s) | 189 |
| Psp5II | RGGWCCY | 1 cut(s) | 145 |
| Psp6I | CCWGG | 1 cut(s) | 201 |
| PspGI | CCWGG | 1 cut(s) | 201 |
| PspN4I | GGNNCC | 4 cut(s) | 147, 207, 349, 415 |
| PspPI | GGNCC | 2 cut(s) | 145, 509 |
| PspPPI | RGGWCCY | 1 cut(s) | 145 |
| PspXI | VCTCGAGB | 1 cut(s) | 170 |
| RsaI | GTAC | 1 cut(s) | 131 |
| RsaNI | GTAC | 1 cut(s) | 130 |
| RseI | CAYNNNNRTG | 2 cut(s) | 104, 383 |
| SaqAI | TTAA | 1 cut(s) | 215 |
| SatI | GCNGC | 1 cut(s) | 176 |
| Sau3AI | GATC | 2 cut(s) | 3, 240 |
| Sau96I | GGNCC | 2 cut(s) | 145, 509 |
| SchI | GAGTC | 3 cut(s) | 191, 244, 440 |
| ScrFI | CCNGG | 1 cut(s) | 203 |
| SfaNI | GCATC | 1 cut(s) | 330 |
| SfcI | CTRYAG | 1 cut(s) | 439 |
| Sfr274I | CTCGAG | 1 cut(s) | 170 |
| SinI | GGWCC | 2 cut(s) | 145, 509 |
| SlaI | CTCGAG | 1 cut(s) | 170 |
| SmiMI | CAYNNNNRTG | 2 cut(s) | 104, 383 |
| SmlI | CTYRAG | 1 cut(s) | 170 |
| SmoI | CTYRAG | 1 cut(s) | 170 |
| Sse9I | AATT | 3 cut(s) | 292, 391, 493 |
| SsiI | CCGC | 2 cut(s) | 48, 428 |
| SspMI | CTAG | 2 cut(s) | 150, 402 |
| StyD4I | CCNGG | 1 cut(s) | 201 |
| StyI | CCWWGG | 1 cut(s) | 408 |
| TaiI | ACGT | 2 cut(s) | 192, 270 |
| TaqI | TCGA | 2 cut(s) | 171, 243 |
| TasI | AATT | 3 cut(s) | 292, 391, 493 |
| Tru1I | TTAA | 1 cut(s) | 215 |
| Tru9I | TTAA | 1 cut(s) | 215 |
| TseFI | GTSAC | 1 cut(s) | 194 |
| TseI | GCWGC | 1 cut(s) | 175 |
| Tsp45I | GTSAC | 1 cut(s) | 194 |
| TspDTI | ATGAA | 4 cut(s) | 134, 153, 323, 368 |
| VpaK11BI | GGWCC | 2 cut(s) | 145, 509 |
| XagI | CCTNNNNNAGG | 1 cut(s) | 456 |
| XbaI | TCTAGA | 1 cut(s) | 401 |
| XceI | RCATGY | 1 cut(s) | 28 |
| XhoI | CTCGAG | 1 cut(s) | 170 |
| XspI | CTAG | 2 cut(s) | 150, 402 |