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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AciI | CCGC | 1 cut(s) | 361 |
| AclI | AACGTT | 1 cut(s) | 312 |
| AclWI | GGATC | 1 cut(s) | 551 |
| AcsI | RAATTY | 1 cut(s) | 428 |
| AfaI | GTAC | 1 cut(s) | 248 |
| AgsI | TTSAA | 4 cut(s) | 13, 296, 376, 569 |
| AjiI | CACGTC | 1 cut(s) | 136 |
| AjnI | CCWGG | 2 cut(s) | 105, 129 |
| AjuI | GAANNNNNNNTTGG | 2 cut(s) | 288, 320 |
| AluBI | AGCT | 4 cut(s) | 48, 161, 562, 572 |
| AluI | AGCT | 4 cut(s) | 48, 161, 562, 572 |
| Alw26I | GTCTC | 2 cut(s) | 292, 496 |
| AlwI | GGATC | 1 cut(s) | 551 |
| Ama87I | CYCGRG | 1 cut(s) | 119 |
| AoxI | GGCC | 1 cut(s) | 93 |
| ApeKI | GCWGC | 1 cut(s) | 179 |
| ApoI | RAATTY | 1 cut(s) | 428 |
| AvaI | CYCGRG | 1 cut(s) | 119 |
| BbsI | GAAGAC | 2 cut(s) | 273, 476 |
| BbvI | GCAGC | 1 cut(s) | 191 |
| BccI | CCATC | 3 cut(s) | 92, 215, 342 |
| BciT130I | CCWGG | 2 cut(s) | 107, 131 |
| BciVI | GTATCC | 1 cut(s) | 103 |
| BcoDI | GTCTC | 2 cut(s) | 292, 496 |
| BfaI | CTAG | 3 cut(s) | 45, 126, 338 |
| BfuI | GTATCC | 1 cut(s) | 103 |
| BglI | GCCNNNNNGGC | 1 cut(s) | 188 |
| BisI | GCNGC | 1 cut(s) | 180 |
| BlsI | GCNGC | 1 cut(s) | 181 |
| Bme1390I | CCNGG | 2 cut(s) | 107, 131 |
| BmeT110I | CYCGRG | 1 cut(s) | 119 |
| BmgBI | CACGTC | 1 cut(s) | 136 |
| BmrFI | CCNGG | 2 cut(s) | 107, 131 |
| BmsI | GCATC | 1 cut(s) | 442 |
| BpiI | GAAGAC | 2 cut(s) | 273, 476 |
| BpuEI | CTTGAG | 3 cut(s) | 74, 141, 227 |
| BsaI | GGTCTC | 1 cut(s) | 292 |
| BseBI | CCWGG | 2 cut(s) | 107, 131 |
| BseGI | GGATG | 1 cut(s) | 600 |
| BseXI | GCAGC | 1 cut(s) | 191 |
| BshFI | GGCC | 1 cut(s) | 95 |
| BsiHKCI | CYCGRG | 1 cut(s) | 119 |
| BsmAI | GTCTC | 2 cut(s) | 292, 496 |
| BsmBI | CGTCTC | 1 cut(s) | 496 |
| BsnI | GGCC | 1 cut(s) | 95 |
| Bso31I | GGTCTC | 1 cut(s) | 292 |
| BsoBI | CYCGRG | 1 cut(s) | 119 |
| Bsp143I | GATC | 2 cut(s) | 444, 543 |
| BspACI | CCGC | 1 cut(s) | 361 |
| BspANI | GGCC | 1 cut(s) | 95 |
| BspHI | TCATGA | 2 cut(s) | 70, 556 |
| BspPI | GGATC | 1 cut(s) | 551 |
| BspTNI | GGTCTC | 1 cut(s) | 292 |
| BssMI | GATC | 2 cut(s) | 444, 543 |
| Bst2UI | CCWGG | 2 cut(s) | 107, 131 |
| BstDEI | CTNAG | 3 cut(s) | 184, 407, 510 |
| BstF5I | GGATG | 1 cut(s) | 600 |
| BstKTI | GATC | 2 cut(s) | 447, 546 |
| BstMAI | GTCTC | 2 cut(s) | 292, 496 |
| BstMBI | GATC | 2 cut(s) | 444, 543 |
| BstMWI | GCNNNNNNNGC | 4 cut(s) | 167, 176, 188, 197 |
| BstNI | CCWGG | 2 cut(s) | 107, 131 |
| BstSCI | CCNGG | 2 cut(s) | 105, 129 |
| BstV1I | GCAGC | 1 cut(s) | 191 |
| BstV2I | GAAGAC | 2 cut(s) | 273, 476 |
| BsuI | GTATCC | 1 cut(s) | 103 |
| BsuRI | GGCC | 1 cut(s) | 95 |
| BtgZI | GCGATG | 1 cut(s) | 470 |
| BtrI | CACGTC | 1 cut(s) | 136 |
| BtsCI | GGATG | 1 cut(s) | 600 |
| CciI | TCATGA | 2 cut(s) | 70, 556 |
| Csp6I | GTAC | 1 cut(s) | 247 |
| CviAII | CATG | 3 cut(s) | 71, 557, 593 |
| CviQI | GTAC | 1 cut(s) | 247 |
| DdeI | CTNAG | 3 cut(s) | 184, 407, 510 |
| DpnI | GATC | 2 cut(s) | 446, 545 |
| DpnII | GATC | 2 cut(s) | 444, 543 |
| DraI | TTTAAA | 1 cut(s) | 165 |
| Eco31I | GGTCTC | 1 cut(s) | 292 |
| Eco88I | CYCGRG | 1 cut(s) | 119 |
| EcoRII | CCWGG | 2 cut(s) | 105, 129 |
| Esp3I | CGTCTC | 1 cut(s) | 496 |
| FaeI | CATG | 3 cut(s) | 74, 560, 596 |
| FatI | CATG | 3 cut(s) | 70, 556, 592 |
| Fnu4HI | GCNGC | 1 cut(s) | 180 |
| FokI | GGATG | 1 cut(s) | 587 |
| Fsp4HI | GCNGC | 1 cut(s) | 180 |
| FspBI | CTAG | 3 cut(s) | 45, 126, 338 |
| GluI | GCNGC | 1 cut(s) | 180 |
| HaeIII | GGCC | 1 cut(s) | 95 |
| Hin1II | CATG | 3 cut(s) | 74, 560, 596 |
| HindIII | AAGCTT | 1 cut(s) | 159 |
| HinfI | GANTC | 5 cut(s) | 102, 220, 320, 522, 627 |
| Hpy188I | TCNGA | 1 cut(s) | 400 |
| Hpy188III | TCNNGA | 6 cut(s) | 51, 71, 119, 332, 386, 557 |
| HpyAV | CCTTC | 1 cut(s) | 493 |
| HpyCH4IV | ACGT | 2 cut(s) | 135, 312 |
| HpyCH4V | TGCA | 1 cut(s) | 497 |
| HpyF10VI | GCNNNNNNNGC | 4 cut(s) | 167, 176, 188, 197 |
| HpyF3I | CTNAG | 3 cut(s) | 184, 407, 510 |
| HpySE526I | ACGT | 2 cut(s) | 135, 312 |
| Hsp92II | CATG | 3 cut(s) | 74, 560, 596 |
| Kzo9I | GATC | 2 cut(s) | 444, 543 |
| LmnI | GCTCC | 1 cut(s) | 34 |
| LpnPI | CCDG | 8 cut(s) | 36, 46, 92, 116, 119, 143, 338, 345 |
| Lsp1109I | GCAGC | 1 cut(s) | 191 |
| LweI | GCATC | 1 cut(s) | 442 |
| MaeI | CTAG | 3 cut(s) | 45, 126, 338 |
| MaeII | ACGT | 2 cut(s) | 135, 312 |
| MaeIII | GTNAC | 3 cut(s) | 5, 317, 529 |
| MalI | GATC | 2 cut(s) | 446, 545 |
| MboI | GATC | 2 cut(s) | 444, 543 |
| MboII | GAAGA | 5 cut(s) | 275, 278, 308, 481, 622 |
| MluCI | AATT | 5 cut(s) | 17, 114, 235, 428, 619 |
| MlyI | GAGTC | 2 cut(s) | 214, 314 |
| MnlI | CCTC | 2 cut(s) | 181, 368 |
| MseI | TTAA | 3 cut(s) | 164, 414, 422 |
| MslI | CAYNNNNRTG | 2 cut(s) | 215, 605 |
| MspR9I | CCNGG | 2 cut(s) | 107, 131 |
| MvaI | CCWGG | 2 cut(s) | 107, 131 |
| MwoI | GCNNNNNNNGC | 4 cut(s) | 167, 176, 188, 197 |
| NdeII | GATC | 2 cut(s) | 444, 543 |
| NlaIII | CATG | 3 cut(s) | 74, 560, 596 |
| NmuCI | GTSAC | 1 cut(s) | 317 |
| PaeR7I | CTCGAG | 1 cut(s) | 119 |
| PagI | TCATGA | 2 cut(s) | 70, 556 |
| PfeI | GAWTC | 3 cut(s) | 102, 522, 627 |
| PfoI | TCCNGGA | 1 cut(s) | 105 |
| PkrI | GCNGC | 1 cut(s) | 181 |
| PleI | GAGTC | 2 cut(s) | 214, 314 |
| PpsI | GAGTC | 2 cut(s) | 214, 314 |
| Psp1406I | AACGTT | 1 cut(s) | 312 |
| Psp6I | CCWGG | 2 cut(s) | 105, 129 |
| PspGI | CCWGG | 2 cut(s) | 105, 129 |
| RsaI | GTAC | 1 cut(s) | 248 |
| RsaNI | GTAC | 1 cut(s) | 247 |
| RseI | CAYNNNNRTG | 2 cut(s) | 215, 605 |
| SaqAI | TTAA | 3 cut(s) | 164, 414, 422 |
| SatI | GCNGC | 1 cut(s) | 180 |
| Sau3AI | GATC | 2 cut(s) | 444, 543 |
| SchI | GAGTC | 2 cut(s) | 214, 314 |
| ScrFI | CCNGG | 2 cut(s) | 107, 131 |
| SfaNI | GCATC | 1 cut(s) | 442 |
| Sfr274I | CTCGAG | 1 cut(s) | 119 |
| SlaI | CTCGAG | 1 cut(s) | 119 |
| SmiMI | CAYNNNNRTG | 2 cut(s) | 215, 605 |
| SmlI | CTYRAG | 4 cut(s) | 89, 119, 156, 242 |
| SmoI | CTYRAG | 4 cut(s) | 89, 119, 156, 242 |
| Sse9I | AATT | 5 cut(s) | 17, 114, 235, 428, 619 |
| SsiI | CCGC | 1 cut(s) | 361 |
| SspMI | CTAG | 3 cut(s) | 45, 126, 338 |
| StyD4I | CCNGG | 2 cut(s) | 105, 129 |
| TaiI | ACGT | 2 cut(s) | 138, 315 |
| TaqI | TCGA | 2 cut(s) | 120, 520 |
| TasI | AATT | 5 cut(s) | 17, 114, 235, 428, 619 |
| TfiI | GAWTC | 3 cut(s) | 102, 522, 627 |
| Tru1I | TTAA | 3 cut(s) | 164, 414, 422 |
| Tru9I | TTAA | 3 cut(s) | 164, 414, 422 |
| TseFI | GTSAC | 1 cut(s) | 317 |
| TseI | GCWGC | 1 cut(s) | 179 |
| Tsp45I | GTSAC | 1 cut(s) | 317 |
| TspDTI | ATGAA | 6 cut(s) | 59, 272, 276, 545, 590, 623 |
| TspGWI | ACGGA | 1 cut(s) | 556 |
| XapI | RAATTY | 1 cut(s) | 428 |
| XhoI | CTCGAG | 1 cut(s) | 119 |
| XspI | CTAG | 3 cut(s) | 45, 126, 338 |