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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AanI | TTATAA | 1 cut(s) | 393 |
| AccB1I | GGYRCC | 1 cut(s) | 532 |
| AciI | CCGC | 4 cut(s) | 26, 223, 465, 663 |
| AclWI | GGATC | 1 cut(s) | 125 |
| AcsI | RAATTY | 1 cut(s) | 115 |
| AcyI | GRCGYC | 2 cut(s) | 533, 720 |
| AfiI | CCNNNNNNNGG | 1 cut(s) | 686 |
| AgsI | TTSAA | 3 cut(s) | 121, 238, 344 |
| AluBI | AGCT | 5 cut(s) | 20, 44, 337, 617, 647 |
| AluI | AGCT | 5 cut(s) | 20, 44, 337, 617, 647 |
| Alw21I | GWGCWC | 1 cut(s) | 339 |
| Alw26I | GTCTC | 3 cut(s) | 154, 271, 394 |
| AlwI | GGATC | 1 cut(s) | 125 |
| AoxI | GGCC | 1 cut(s) | 677 |
| ApeKI | GCWGC | 2 cut(s) | 41, 647 |
| ApoI | RAATTY | 1 cut(s) | 115 |
| AspA2I | CCTAGG | 1 cut(s) | 680 |
| AspLEI | GCGC | 1 cut(s) | 535 |
| AsuHPI | GGTGA | 2 cut(s) | 743, 758 |
| AsuII | TTCGAA | 1 cut(s) | 295 |
| AvrII | CCTAGG | 1 cut(s) | 680 |
| BanI | GGYRCC | 1 cut(s) | 532 |
| BanII | GRGCYC | 1 cut(s) | 339 |
| BauI | CACGAG | 1 cut(s) | 567 |
| Bbv12I | GWGCWC | 1 cut(s) | 339 |
| BbvI | GCAGC | 2 cut(s) | 53, 634 |
| BccI | CCATC | 4 cut(s) | 77, 204, 560, 674 |
| BcgI | CGANNNNNNTGC | 2 cut(s) | 290, 324 |
| BcoDI | GTCTC | 3 cut(s) | 154, 271, 394 |
| BfaI | CTAG | 3 cut(s) | 518, 654, 681 |
| BfoI | RGCGCY | 1 cut(s) | 536 |
| BisI | GCNGC | 2 cut(s) | 42, 648 |
| BlnI | CCTAGG | 1 cut(s) | 680 |
| BlsI | GCNGC | 2 cut(s) | 43, 649 |
| BmiI | GGNNCC | 1 cut(s) | 534 |
| BmsI | GCATC | 2 cut(s) | 727, 777 |
| BpmI | CTGGAG | 1 cut(s) | 446 |
| Bpu14I | TTCGAA | 1 cut(s) | 295 |
| BpuEI | CTTGAG | 1 cut(s) | 6 |
| Bsa29I | ATCGAT | 1 cut(s) | 300 |
| BsaHI | GRCGYC | 2 cut(s) | 533, 720 |
| BsaI | GGTCTC | 2 cut(s) | 154, 394 |
| BsaJI | CCNNGG | 2 cut(s) | 405, 680 |
| Bsc4I | CCNNNNNNNGG | 1 cut(s) | 686 |
| Bse1I | ACTGG | 1 cut(s) | 680 |
| Bse3DI | GCAATG | 2 cut(s) | 178, 516 |
| BseCI | ATCGAT | 1 cut(s) | 300 |
| BseDI | CCNNGG | 2 cut(s) | 405, 680 |
| BseGI | GGATG | 3 cut(s) | 72, 100, 375 |
| BseLI | CCNNNNNNNGG | 1 cut(s) | 686 |
| BseMI | GCAATG | 2 cut(s) | 178, 516 |
| BseMII | CTCAG | 1 cut(s) | 536 |
| BseNI | ACTGG | 1 cut(s) | 680 |
| BseXI | GCAGC | 2 cut(s) | 53, 634 |
| BshFI | GGCC | 1 cut(s) | 679 |
| BshNI | GGYRCC | 1 cut(s) | 532 |
| BshVI | ATCGAT | 1 cut(s) | 300 |
| BsiHKAI | GWGCWC | 1 cut(s) | 339 |
| BslFI | GGGAC | 1 cut(s) | 680 |
| BslI | CCNNNNNNNGG | 1 cut(s) | 686 |
| BsmAI | GTCTC | 3 cut(s) | 154, 271, 394 |
| BsmFI | GGGAC | 1 cut(s) | 680 |
| BsnI | GGCC | 1 cut(s) | 679 |
| Bso31I | GGTCTC | 2 cut(s) | 154, 394 |
| Bsp119I | TTCGAA | 1 cut(s) | 295 |
| Bsp1286I | GDGCHC | 1 cut(s) | 339 |
| Bsp143I | GATC | 2 cut(s) | 130, 637 |
| BspACI | CCGC | 4 cut(s) | 26, 223, 465, 663 |
| BspANI | GGCC | 1 cut(s) | 679 |
| BspCNI | CTCAG | 1 cut(s) | 537 |
| BspDI | ATCGAT | 1 cut(s) | 300 |
| BspHI | TCATGA | 1 cut(s) | 331 |
| BspLI | GGNNCC | 1 cut(s) | 534 |
| BspPI | GGATC | 1 cut(s) | 125 |
| BspT104I | TTCGAA | 1 cut(s) | 295 |
| BspT107I | GGYRCC | 1 cut(s) | 532 |
| BspTNI | GGTCTC | 2 cut(s) | 154, 394 |
| BsrDI | GCAATG | 2 cut(s) | 178, 516 |
| BsrI | ACTGG | 1 cut(s) | 680 |
| BssECI | CCNNGG | 2 cut(s) | 405, 680 |
| BssMI | GATC | 2 cut(s) | 130, 637 |
| BssNI | GRCGYC | 2 cut(s) | 533, 720 |
| BssSI | CACGAG | 1 cut(s) | 567 |
| BssT1I | CCWWGG | 1 cut(s) | 680 |
| Bst2BI | CACGAG | 1 cut(s) | 567 |
| Bst4CI | ACNGT | 1 cut(s) | 10 |
| Bst6I | CTCTTC | 1 cut(s) | 474 |
| BstACI | GRCGYC | 2 cut(s) | 533, 720 |
| BstBI | TTCGAA | 1 cut(s) | 295 |
| BstC8I | GCNNGC | 1 cut(s) | 18 |
| BstDEI | CTNAG | 3 cut(s) | 199, 285, 545 |
| BstDSI | CCRYGG | 1 cut(s) | 405 |
| BstF5I | GGATG | 3 cut(s) | 72, 100, 375 |
| BstH2I | RGCGCY | 1 cut(s) | 536 |
| BstHHI | GCGC | 1 cut(s) | 535 |
| BstKTI | GATC | 2 cut(s) | 133, 640 |
| BstMAI | GTCTC | 3 cut(s) | 154, 271, 394 |
| BstMBI | GATC | 2 cut(s) | 130, 637 |
| BstMWI | GCNNNNNNNGC | 3 cut(s) | 38, 50, 59 |
| BstV1I | GCAGC | 2 cut(s) | 53, 634 |
| BstX2I | RGATCY | 1 cut(s) | 130 |
| BstXI | CCANNNNNNTGG | 1 cut(s) | 529 |
| BstYI | RGATCY | 1 cut(s) | 130 |
| Bsu15I | ATCGAT | 1 cut(s) | 300 |
| BsuRI | GGCC | 1 cut(s) | 679 |
| BsuTUI | ATCGAT | 1 cut(s) | 300 |
| BtgI | CCRYGG | 1 cut(s) | 405 |
| BtsCI | GGATG | 3 cut(s) | 72, 100, 375 |
| BtsIMutI | CAGTG | 2 cut(s) | 542, 673 |
| Cac8I | GCNNGC | 1 cut(s) | 18 |
| CciI | TCATGA | 1 cut(s) | 331 |
| CfoI | GCGC | 1 cut(s) | 535 |
| ClaI | ATCGAT | 1 cut(s) | 300 |
| CseI | GACGC | 1 cut(s) | 709 |
| CspCI | CAANNNNNGTGG | 2 cut(s) | 748, 783 |
| CviAII | CATG | 8 cut(s) | 332, 349, 368, 490, 523, 704, 728, 793 |
| DdeI | CTNAG | 3 cut(s) | 199, 285, 545 |
| DinI | GGCGCC | 1 cut(s) | 534 |
| DpnI | GATC | 2 cut(s) | 132, 639 |
| DpnII | GATC | 2 cut(s) | 130, 637 |
| Eam1104I | CTCTTC | 1 cut(s) | 474 |
| EarI | CTCTTC | 1 cut(s) | 474 |
| EciI | GGCGGA | 1 cut(s) | 480 |
| Ecl136II | GAGCTC | 1 cut(s) | 337 |
| Eco130I | CCWWGG | 1 cut(s) | 680 |
| Eco24I | GRGCYC | 1 cut(s) | 339 |
| Eco31I | GGTCTC | 2 cut(s) | 154, 394 |
| Eco53kI | GAGCTC | 1 cut(s) | 337 |
| EcoICRI | GAGCTC | 1 cut(s) | 337 |
| EcoT14I | CCWWGG | 1 cut(s) | 680 |
| EcoT38I | GRGCYC | 1 cut(s) | 339 |
| EgeI | GGCGCC | 1 cut(s) | 534 |
| EheI | GGCGCC | 1 cut(s) | 534 |
| ErhI | CCWWGG | 1 cut(s) | 680 |
| FaeI | CATG | 8 cut(s) | 335, 352, 371, 493, 526, 707, 731, 796 |
| FaqI | GGGAC | 1 cut(s) | 680 |
| FatI | CATG | 8 cut(s) | 331, 348, 367, 489, 522, 703, 727, 792 |
| FauI | CCCGC | 1 cut(s) | 19 |
| FauNDI | CATATG | 1 cut(s) | 90 |
| Fnu4HI | GCNGC | 2 cut(s) | 42, 648 |
| FokI | GGATG | 3 cut(s) | 59, 107, 362 |
| FriOI | GRGCYC | 1 cut(s) | 339 |
| Fsp4HI | GCNGC | 2 cut(s) | 42, 648 |
| FspBI | CTAG | 3 cut(s) | 518, 654, 681 |
| GlaI | GCGC | 1 cut(s) | 534 |
| GluI | GCNGC | 2 cut(s) | 42, 648 |
| GsuI | CTGGAG | 1 cut(s) | 446 |
| HaeII | RGCGCY | 1 cut(s) | 536 |
| HaeIII | GGCC | 1 cut(s) | 679 |
| HgaI | GACGC | 1 cut(s) | 709 |
| HhaI | GCGC | 1 cut(s) | 535 |
| Hin1I | GRCGYC | 2 cut(s) | 533, 720 |
| Hin1II | CATG | 8 cut(s) | 335, 352, 371, 493, 526, 707, 731, 796 |
| Hin6I | GCGC | 1 cut(s) | 533 |
| HinP1I | GCGC | 1 cut(s) | 533 |
| HincII | GTYRAC | 1 cut(s) | 487 |
| HindII | GTYRAC | 1 cut(s) | 487 |
| HinfI | GANTC | 5 cut(s) | 82, 98, 182, 297, 318 |
| HphI | GGTGA | 2 cut(s) | 743, 758 |
| Hpy166II | GTNNAC | 1 cut(s) | 487 |
| Hpy188I | TCNGA | 1 cut(s) | 786 |
| Hpy188III | TCNNGA | 6 cut(s) | 194, 332, 399, 425, 569, 641 |
| Hpy8I | GTNNAC | 1 cut(s) | 487 |
| HpyAV | CCTTC | 2 cut(s) | 132, 268 |
| HpyCH4III | ACNGT | 1 cut(s) | 10 |
| HpyCH4IV | ACGT | 1 cut(s) | 693 |
| HpyCH4V | TGCA | 2 cut(s) | 311, 432 |
| HpyF10VI | GCNNNNNNNGC | 3 cut(s) | 38, 50, 59 |
| HpyF3I | CTNAG | 3 cut(s) | 199, 285, 545 |
| HpySE526I | ACGT | 1 cut(s) | 693 |
| Hsp92I | GRCGYC | 2 cut(s) | 533, 720 |
| Hsp92II | CATG | 8 cut(s) | 335, 352, 371, 493, 526, 707, 731, 796 |
| HspAI | GCGC | 1 cut(s) | 533 |
| KasI | GGCGCC | 1 cut(s) | 532 |
| Kzo9I | GATC | 2 cut(s) | 130, 637 |
| LmnI | GCTCC | 2 cut(s) | 29, 108 |
| LpnPI | CCDG | 7 cut(s) | 148, 200, 207, 297, 372, 410, 661 |
| Lsp1109I | GCAGC | 2 cut(s) | 53, 634 |
| LweI | GCATC | 2 cut(s) | 727, 777 |
| MaeI | CTAG | 3 cut(s) | 518, 654, 681 |
| MaeII | ACGT | 1 cut(s) | 693 |
| MaeIII | GTNAC | 3 cut(s) | 179, 448, 689 |
| MalI | GATC | 2 cut(s) | 132, 639 |
| MboI | GATC | 2 cut(s) | 130, 637 |
| MboII | GAAGA | 5 cut(s) | 137, 140, 397, 491, 647 |
| MflI | RGATCY | 1 cut(s) | 130 |
| MhlI | GDGCHC | 1 cut(s) | 339 |
| MluCI | AATT | 4 cut(s) | 115, 388, 394, 433 |
| Mly113I | GGCGCC | 1 cut(s) | 533 |
| MlyI | GAGTC | 2 cut(s) | 76, 176 |
| MnlI | CCTC | 7 cut(s) | 43, 475, 495, 499, 525, 565, 661 |
| MseI | TTAA | 2 cut(s) | 275, 557 |
| MslI | CAYNNNNRTG | 6 cut(s) | 77, 93, 380, 527, 557, 732 |
| MwoI | GCNNNNNNNGC | 3 cut(s) | 38, 50, 59 |
| NarI | GGCGCC | 1 cut(s) | 533 |
| NdeI | CATATG | 1 cut(s) | 90 |
| NdeII | GATC | 2 cut(s) | 130, 637 |
| NlaIII | CATG | 8 cut(s) | 335, 352, 371, 493, 526, 707, 731, 796 |
| NlaIV | GGNNCC | 1 cut(s) | 534 |
| NmuCI | GTSAC | 1 cut(s) | 179 |
| NspV | TTCGAA | 1 cut(s) | 295 |
| PagI | TCATGA | 1 cut(s) | 331 |
| PfeI | GAWTC | 3 cut(s) | 98, 297, 318 |
| PkrI | GCNGC | 2 cut(s) | 43, 649 |
| PleI | GAGTC | 2 cut(s) | 76, 176 |
| PluTI | GGCGCC | 1 cut(s) | 536 |
| PpsI | GAGTC | 2 cut(s) | 76, 176 |
| PsiI | TTATAA | 1 cut(s) | 393 |
| Psp124BI | GAGCTC | 1 cut(s) | 339 |
| PspN4I | GGNNCC | 1 cut(s) | 534 |
| PsuI | RGATCY | 1 cut(s) | 130 |
| RseI | CAYNNNNRTG | 6 cut(s) | 77, 93, 380, 527, 557, 732 |
| SacI | GAGCTC | 1 cut(s) | 339 |
| SaqAI | TTAA | 2 cut(s) | 275, 557 |
| SatI | GCNGC | 2 cut(s) | 42, 648 |
| Sau3AI | GATC | 2 cut(s) | 130, 637 |
| SchI | GAGTC | 2 cut(s) | 76, 176 |
| SduI | GDGCHC | 1 cut(s) | 339 |
| SetI | ASST | 9 cut(s) | 22, 46, 329, 339, 486, 590, 619, 649, 696 |
| SfaNI | GCATC | 2 cut(s) | 727, 777 |
| SfoI | GGCGCC | 1 cut(s) | 534 |
| SfuI | TTCGAA | 1 cut(s) | 295 |
| SmiMI | CAYNNNNRTG | 6 cut(s) | 77, 93, 380, 527, 557, 732 |
| SmlI | CTYRAG | 1 cut(s) | 21 |
| SmoI | CTYRAG | 1 cut(s) | 21 |
| Sse9I | AATT | 4 cut(s) | 115, 388, 394, 433 |
| SsiI | CCGC | 4 cut(s) | 26, 223, 465, 663 |
| SspDI | GGCGCC | 1 cut(s) | 532 |
| SspMI | CTAG | 3 cut(s) | 518, 654, 681 |
| SstI | GAGCTC | 1 cut(s) | 339 |
| StyI | CCWWGG | 1 cut(s) | 680 |
| TaaI | ACNGT | 1 cut(s) | 10 |
| TaiI | ACGT | 1 cut(s) | 696 |
| TaqI | TCGA | 3 cut(s) | 295, 300, 398 |
| TasI | AATT | 4 cut(s) | 115, 388, 394, 433 |
| TfiI | GAWTC | 3 cut(s) | 98, 297, 318 |
| Tru1I | TTAA | 2 cut(s) | 275, 557 |
| Tru9I | TTAA | 2 cut(s) | 275, 557 |
| TscAI | CASTG | 2 cut(s) | 549, 680 |
| TseFI | GTSAC | 1 cut(s) | 179 |
| TseI | GCWGC | 2 cut(s) | 41, 647 |
| Tsp45I | GTSAC | 1 cut(s) | 179 |
| TspDTI | ATGAA | 4 cut(s) | 138, 320, 365, 618 |
| TspGWI | ACGGA | 2 cut(s) | 167, 218 |
| TspRI | CASTG | 2 cut(s) | 549, 680 |
| XapI | RAATTY | 1 cut(s) | 115 |
| XmaJI | CCTAGG | 1 cut(s) | 680 |
| XspI | CTAG | 3 cut(s) | 518, 654, 681 |