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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccB1I | GGYRCC | 2 cut(s) | 387, 542 |
| AcoI | YGGCCR | 1 cut(s) | 529 |
| AcsI | RAATTY | 1 cut(s) | 212 |
| AcyI | GRCGYC | 2 cut(s) | 388, 543 |
| AfaI | GTAC | 1 cut(s) | 32 |
| AfiI | CCNNNNNNNGG | 1 cut(s) | 383 |
| AgsI | TTSAA | 3 cut(s) | 160, 580, 704 |
| AhdI | GACNNNNNGTC | 1 cut(s) | 68 |
| AluBI | AGCT | 5 cut(s) | 265, 275, 295, 665, 716 |
| AluI | AGCT | 5 cut(s) | 265, 275, 295, 665, 716 |
| Alw21I | GWGCWC | 2 cut(s) | 267, 667 |
| Alw26I | GTCTC | 1 cut(s) | 76 |
| AoxI | GGCC | 1 cut(s) | 529 |
| ApoI | RAATTY | 1 cut(s) | 212 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 189 |
| AspLEI | GCGC | 3 cut(s) | 390, 399, 545 |
| AspS9I | GGNCC | 1 cut(s) | 431 |
| AsuII | TTCGAA | 1 cut(s) | 326 |
| AvaII | GGWCC | 1 cut(s) | 431 |
| BaeGI | GKGCMC | 1 cut(s) | 652 |
| BalI | TGGCCA | 1 cut(s) | 531 |
| BanI | GGYRCC | 2 cut(s) | 387, 542 |
| BanII | GRGCYC | 3 cut(s) | 267, 376, 667 |
| BauI | CACGAG | 2 cut(s) | 308, 666 |
| BbsI | GAAGAC | 2 cut(s) | 57, 67 |
| Bbv12I | GWGCWC | 2 cut(s) | 267, 667 |
| BccI | CCATC | 2 cut(s) | 126, 570 |
| BclI | TGATCA | 1 cut(s) | 640 |
| BcoDI | GTCTC | 1 cut(s) | 76 |
| BfaI | CTAG | 3 cut(s) | 122, 353, 752 |
| BfoI | RGCGCY | 3 cut(s) | 391, 400, 546 |
| Bme18I | GGWCC | 1 cut(s) | 431 |
| BmeRI | GACNNNNNGTC | 1 cut(s) | 68 |
| BmgT120I | GGNCC | 1 cut(s) | 431 |
| BmiI | GGNNCC | 3 cut(s) | 389, 485, 544 |
| BpiI | GAAGAC | 2 cut(s) | 57, 67 |
| BpmI | CTGGAG | 1 cut(s) | 11 |
| Bpu14I | TTCGAA | 1 cut(s) | 326 |
| BsaBI | GATNNNNATC | 1 cut(s) | 245 |
| BsaHI | GRCGYC | 2 cut(s) | 388, 543 |
| BsaI | GGTCTC | 1 cut(s) | 76 |
| BsaJI | CCNNGG | 1 cut(s) | 333 |
| Bsc4I | CCNNNNNNNGG | 1 cut(s) | 383 |
| Bse1I | ACTGG | 1 cut(s) | 28 |
| Bse8I | GATNNNNATC | 1 cut(s) | 245 |
| BseDI | CCNNGG | 1 cut(s) | 333 |
| BseGI | GGATG | 3 cut(s) | 22, 303, 428 |
| BseJI | GATNNNNATC | 1 cut(s) | 245 |
| BseLI | CCNNNNNNNGG | 1 cut(s) | 383 |
| BseNI | ACTGG | 1 cut(s) | 28 |
| BseSI | GKGCMC | 1 cut(s) | 652 |
| BshFI | GGCC | 1 cut(s) | 531 |
| BshNI | GGYRCC | 2 cut(s) | 387, 542 |
| BsiHKAI | GWGCWC | 2 cut(s) | 267, 667 |
| BslI | CCNNNNNNNGG | 1 cut(s) | 383 |
| BsmAI | GTCTC | 1 cut(s) | 76 |
| BsnI | GGCC | 1 cut(s) | 531 |
| Bso31I | GGTCTC | 1 cut(s) | 76 |
| Bsp119I | TTCGAA | 1 cut(s) | 326 |
| Bsp1286I | GDGCHC | 4 cut(s) | 267, 376, 652, 667 |
| Bsp143I | GATC | 3 cut(s) | 640, 736, 748 |
| BspANI | GGCC | 1 cut(s) | 531 |
| BspHI | TCATGA | 1 cut(s) | 259 |
| BspLI | GGNNCC | 3 cut(s) | 389, 485, 544 |
| BspQI | GCTCTTC | 1 cut(s) | 551 |
| BspT104I | TTCGAA | 1 cut(s) | 326 |
| BspT107I | GGYRCC | 2 cut(s) | 387, 542 |
| BspTNI | GGTCTC | 1 cut(s) | 76 |
| BsrI | ACTGG | 1 cut(s) | 28 |
| BssECI | CCNNGG | 1 cut(s) | 333 |
| BssMI | GATC | 3 cut(s) | 640, 736, 748 |
| BssNI | GRCGYC | 2 cut(s) | 388, 543 |
| BssSI | CACGAG | 2 cut(s) | 308, 666 |
| Bst2BI | CACGAG | 2 cut(s) | 308, 666 |
| Bst4CI | ACNGT | 1 cut(s) | 66 |
| Bst6I | CTCTTC | 2 cut(s) | 484, 551 |
| BstACI | GRCGYC | 2 cut(s) | 388, 543 |
| BstBI | TTCGAA | 1 cut(s) | 326 |
| BstDEI | CTNAG | 1 cut(s) | 407 |
| BstDSI | CCRYGG | 1 cut(s) | 333 |
| BstF5I | GGATG | 3 cut(s) | 22, 303, 428 |
| BstH2I | RGCGCY | 3 cut(s) | 391, 400, 546 |
| BstHHI | GCGC | 3 cut(s) | 390, 399, 545 |
| BstKTI | GATC | 3 cut(s) | 643, 739, 751 |
| BstMAI | GTCTC | 1 cut(s) | 76 |
| BstMBI | GATC | 3 cut(s) | 640, 736, 748 |
| BstMWI | GCNNNNNNNGC | 4 cut(s) | 394, 396, 692, 713 |
| BstSLI | GKGCMC | 1 cut(s) | 652 |
| BstV2I | GAAGAC | 2 cut(s) | 57, 67 |
| BstXI | CCANNNNNNTGG | 1 cut(s) | 539 |
| BsuRI | GGCC | 1 cut(s) | 531 |
| BtgI | CCRYGG | 1 cut(s) | 333 |
| BtsCI | GGATG | 3 cut(s) | 22, 303, 428 |
| BtsI | GCAGTG | 1 cut(s) | 681 |
| BtsIMutI | CAGTG | 1 cut(s) | 681 |
| CciI | TCATGA | 1 cut(s) | 259 |
| CfoI | GCGC | 3 cut(s) | 390, 399, 545 |
| Cfr13I | GGNCC | 1 cut(s) | 431 |
| CseI | GACGC | 1 cut(s) | 581 |
| Csp6I | GTAC | 1 cut(s) | 31 |
| CviAII | CATG | 2 cut(s) | 260, 533 |
| CviJI | RGCY | 9 cut(s) | 265, 275, 295, 374, 531, 561, 586, 665, 716 |
| CviKI_1 | RGCY | 9 cut(s) | 265, 275, 295, 374, 531, 561, 586, 665, 716 |
| CviQI | GTAC | 1 cut(s) | 31 |
| DdeI | CTNAG | 1 cut(s) | 407 |
| DinI | GGCGCC | 2 cut(s) | 389, 544 |
| DpnI | GATC | 3 cut(s) | 642, 738, 750 |
| DpnII | GATC | 3 cut(s) | 640, 736, 748 |
| DriI | GACNNNNNGTC | 1 cut(s) | 68 |
| EaeI | YGGCCR | 1 cut(s) | 529 |
| Eam1104I | CTCTTC | 2 cut(s) | 484, 551 |
| Eam1105I | GACNNNNNGTC | 1 cut(s) | 68 |
| EarI | CTCTTC | 2 cut(s) | 484, 551 |
| Ecl136II | GAGCTC | 2 cut(s) | 265, 665 |
| Eco24I | GRGCYC | 3 cut(s) | 267, 376, 667 |
| Eco31I | GGTCTC | 1 cut(s) | 76 |
| Eco47I | GGWCC | 1 cut(s) | 431 |
| Eco53kI | GAGCTC | 2 cut(s) | 265, 665 |
| EcoICRI | GAGCTC | 2 cut(s) | 265, 665 |
| EcoRI | GAATTC | 1 cut(s) | 212 |
| EcoT38I | GRGCYC | 3 cut(s) | 267, 376, 667 |
| EgeI | GGCGCC | 2 cut(s) | 389, 544 |
| EheI | GGCGCC | 2 cut(s) | 389, 544 |
| FaeI | CATG | 2 cut(s) | 263, 536 |
| FatI | CATG | 2 cut(s) | 259, 532 |
| FauNDI | CATATG | 1 cut(s) | 12 |
| FbaI | TGATCA | 1 cut(s) | 640 |
| FokI | GGATG | 3 cut(s) | 29, 290, 435 |
| FriOI | GRGCYC | 3 cut(s) | 267, 376, 667 |
| FspBI | CTAG | 3 cut(s) | 122, 353, 752 |
| GlaI | GCGC | 3 cut(s) | 389, 398, 544 |
| GsuI | CTGGAG | 1 cut(s) | 11 |
| HaeII | RGCGCY | 3 cut(s) | 391, 400, 546 |
| HaeIII | GGCC | 1 cut(s) | 531 |
| HgaI | GACGC | 1 cut(s) | 581 |
| HhaI | GCGC | 3 cut(s) | 390, 399, 545 |
| Hin1I | GRCGYC | 2 cut(s) | 388, 543 |
| Hin1II | CATG | 2 cut(s) | 263, 536 |
| Hin6I | GCGC | 3 cut(s) | 388, 397, 543 |
| HinP1I | GCGC | 3 cut(s) | 388, 397, 543 |
| HincII | GTYRAC | 1 cut(s) | 497 |
| HindII | GTYRAC | 1 cut(s) | 497 |
| HindIII | AAGCTT | 1 cut(s) | 293 |
| HinfI | GANTC | 5 cut(s) | 4, 20, 104, 246, 356 |
| Hpy166II | GTNNAC | 1 cut(s) | 497 |
| Hpy188I | TCNGA | 2 cut(s) | 184, 640 |
| Hpy188III | TCNNGA | 8 cut(s) | 170, 260, 310, 353, 624, 668, 740, 752 |
| Hpy8I | GTNNAC | 1 cut(s) | 497 |
| HpyAV | CCTTC | 1 cut(s) | 449 |
| HpyCH4III | ACNGT | 1 cut(s) | 66 |
| HpyCH4IV | ACGT | 2 cut(s) | 96, 499 |
| HpyF10VI | GCNNNNNNNGC | 4 cut(s) | 394, 396, 692, 713 |
| HpyF3I | CTNAG | 1 cut(s) | 407 |
| HpySE526I | ACGT | 2 cut(s) | 96, 499 |
| Hsp92I | GRCGYC | 2 cut(s) | 388, 543 |
| Hsp92II | CATG | 2 cut(s) | 263, 536 |
| HspAI | GCGC | 3 cut(s) | 388, 397, 543 |
| KasI | GGCGCC | 2 cut(s) | 387, 542 |
| Ksp22I | TGATCA | 1 cut(s) | 640 |
| Kzo9I | GATC | 3 cut(s) | 640, 736, 748 |
| LguI | GCTCTTC | 1 cut(s) | 551 |
| LmnI | GCTCC | 3 cut(s) | 30, 117, 272 |
| LpnPI | CCDG | 5 cut(s) | 41, 70, 122, 129, 414 |
| MaeI | CTAG | 3 cut(s) | 122, 353, 752 |
| MaeII | ACGT | 2 cut(s) | 96, 499 |
| MaeIII | GTNAC | 2 cut(s) | 101, 679 |
| MalI | GATC | 3 cut(s) | 642, 738, 750 |
| MboI | GATC | 3 cut(s) | 640, 736, 748 |
| MboII | GAAGA | 9 cut(s) | 59, 62, 72, 325, 501, 568, 683, 746, 755 |
| MhlI | GDGCHC | 4 cut(s) | 267, 376, 652, 667 |
| MlsI | TGGCCA | 1 cut(s) | 531 |
| MluCI | AATT | 4 cut(s) | 212, 322, 361, 675 |
| MluNI | TGGCCA | 1 cut(s) | 531 |
| Mly113I | GGCGCC | 2 cut(s) | 388, 543 |
| MlyI | GAGTC | 1 cut(s) | 98 |
| MnlI | CCTC | 7 cut(s) | 152, 317, 377, 485, 505, 509, 597 |
| Mox20I | TGGCCA | 1 cut(s) | 531 |
| MroXI | GAANNNNTTC | 1 cut(s) | 189 |
| MscI | TGGCCA | 1 cut(s) | 531 |
| MseI | TTAA | 2 cut(s) | 198, 206 |
| MslI | CAYNNNNRTG | 5 cut(s) | 15, 308, 421, 537, 567 |
| Msp20I | TGGCCA | 1 cut(s) | 531 |
| MwoI | GCNNNNNNNGC | 4 cut(s) | 394, 396, 692, 713 |
| NarI | GGCGCC | 2 cut(s) | 388, 543 |
| NdeI | CATATG | 1 cut(s) | 12 |
| NdeII | GATC | 3 cut(s) | 640, 736, 748 |
| NlaIII | CATG | 2 cut(s) | 263, 536 |
| NlaIV | GGNNCC | 3 cut(s) | 389, 485, 544 |
| NmuCI | GTSAC | 2 cut(s) | 101, 679 |
| NspV | TTCGAA | 1 cut(s) | 326 |
| PagI | TCATGA | 1 cut(s) | 259 |
| PciSI | GCTCTTC | 1 cut(s) | 551 |
| PdmI | GAANNNNTTC | 1 cut(s) | 189 |
| PfeI | GAWTC | 3 cut(s) | 20, 246, 356 |
| PleI | GAGTC | 1 cut(s) | 98 |
| PluTI | GGCGCC | 2 cut(s) | 391, 546 |
| PpsI | GAGTC | 1 cut(s) | 98 |
| Psp124BI | GAGCTC | 2 cut(s) | 267, 667 |
| PspN4I | GGNNCC | 3 cut(s) | 389, 485, 544 |
| PspPI | GGNCC | 1 cut(s) | 431 |
| RsaI | GTAC | 1 cut(s) | 32 |
| RsaNI | GTAC | 1 cut(s) | 31 |
| RseI | CAYNNNNRTG | 5 cut(s) | 15, 308, 421, 537, 567 |
| SacI | GAGCTC | 2 cut(s) | 267, 667 |
| SapI | GCTCTTC | 1 cut(s) | 551 |
| SaqAI | TTAA | 2 cut(s) | 198, 206 |
| Sau3AI | GATC | 3 cut(s) | 640, 736, 748 |
| Sau96I | GGNCC | 1 cut(s) | 431 |
| SchI | GAGTC | 1 cut(s) | 98 |
| SduI | GDGCHC | 4 cut(s) | 267, 376, 652, 667 |
| SfoI | GGCGCC | 2 cut(s) | 389, 544 |
| SfuI | TTCGAA | 1 cut(s) | 326 |
| SinI | GGWCC | 1 cut(s) | 431 |
| SmiMI | CAYNNNNRTG | 5 cut(s) | 15, 308, 421, 537, 567 |
| Sse9I | AATT | 4 cut(s) | 212, 322, 361, 675 |
| SspDI | GGCGCC | 2 cut(s) | 387, 542 |
| SspMI | CTAG | 3 cut(s) | 122, 353, 752 |
| SstI | GAGCTC | 2 cut(s) | 267, 667 |
| TaaI | ACNGT | 1 cut(s) | 66 |
| TaiI | ACGT | 2 cut(s) | 99, 502 |
| TaqI | TCGA | 4 cut(s) | 78, 326, 370, 625 |
| TasI | AATT | 4 cut(s) | 212, 322, 361, 675 |
| TfiI | GAWTC | 3 cut(s) | 20, 246, 356 |
| Tru1I | TTAA | 2 cut(s) | 198, 206 |
| Tru9I | TTAA | 2 cut(s) | 198, 206 |
| TscAI | CASTG | 1 cut(s) | 688 |
| TseFI | GTSAC | 2 cut(s) | 101, 679 |
| Tsp45I | GTSAC | 2 cut(s) | 101, 679 |
| TspDTI | ATGAA | 5 cut(s) | 56, 60, 96, 248, 293 |
| TspGWI | ACGGA | 3 cut(s) | 134, 322, 496 |
| TspRI | CASTG | 1 cut(s) | 688 |
| VpaK11BI | GGWCC | 1 cut(s) | 431 |
| XapI | RAATTY | 1 cut(s) | 212 |
| XbaI | TCTAGA | 2 cut(s) | 352, 751 |
| XmnI | GAANNNNTTC | 1 cut(s) | 189 |
| XspI | CTAG | 3 cut(s) | 122, 353, 752 |