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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccB1I | GGYRCC | 1 cut(s) | 653 |
| AciI | CCGC | 4 cut(s) | 79, 316, 585, 795 |
| AclWI | GGATC | 1 cut(s) | 576 |
| AcoI | YGGCCR | 1 cut(s) | 640 |
| AcsI | RAATTY | 1 cut(s) | 383 |
| AfaI | GTAC | 1 cut(s) | 248 |
| AgsI | TTSAA | 3 cut(s) | 53, 331, 691 |
| AjnI | CCWGG | 1 cut(s) | 129 |
| AluBI | AGCT | 6 cut(s) | 161, 517, 527, 672, 776, 827 |
| AluI | AGCT | 6 cut(s) | 161, 517, 527, 672, 776, 827 |
| Alw21I | GWGCWC | 2 cut(s) | 519, 778 |
| Alw26I | GTCTC | 1 cut(s) | 451 |
| AlwI | GGATC | 1 cut(s) | 576 |
| Ama87I | CYCGRG | 1 cut(s) | 119 |
| AoxI | GGCC | 1 cut(s) | 640 |
| ApeKI | GCWGC | 1 cut(s) | 179 |
| ApoI | RAATTY | 1 cut(s) | 383 |
| AspS9I | GGNCC | 1 cut(s) | 595 |
| AsuHPI | GGTGA | 1 cut(s) | 784 |
| AvaI | CYCGRG | 1 cut(s) | 119 |
| AvaII | GGWCC | 1 cut(s) | 595 |
| BaeGI | GKGCMC | 1 cut(s) | 763 |
| BalI | TGGCCA | 1 cut(s) | 642 |
| BanI | GGYRCC | 1 cut(s) | 653 |
| BanII | GRGCYC | 2 cut(s) | 519, 778 |
| BauI | CACGAG | 1 cut(s) | 777 |
| BbsI | GAAGAC | 1 cut(s) | 431 |
| Bbv12I | GWGCWC | 2 cut(s) | 519, 778 |
| BbvI | GCAGC | 1 cut(s) | 191 |
| BccI | CCATC | 3 cut(s) | 92, 297, 451 |
| BcgI | CGANNNNNNTGC | 2 cut(s) | 470, 504 |
| BciT130I | CCWGG | 1 cut(s) | 131 |
| BclI | TGATCA | 1 cut(s) | 751 |
| BcoDI | GTCTC | 1 cut(s) | 451 |
| BfaI | CTAG | 3 cut(s) | 126, 293, 863 |
| BfmI | CTRYAG | 1 cut(s) | 799 |
| BglI | GCCNNNNNGGC | 1 cut(s) | 188 |
| BisI | GCNGC | 1 cut(s) | 180 |
| BlsI | GCNGC | 1 cut(s) | 181 |
| Bme1390I | CCNGG | 1 cut(s) | 131 |
| Bme18I | GGWCC | 1 cut(s) | 595 |
| BmeT110I | CYCGRG | 1 cut(s) | 119 |
| BmgT120I | GGNCC | 1 cut(s) | 595 |
| BmiI | GGNNCC | 1 cut(s) | 655 |
| BmrFI | CCNGG | 1 cut(s) | 131 |
| BmsI | GCATC | 2 cut(s) | 94, 706 |
| BpiI | GAAGAC | 1 cut(s) | 431 |
| BpmI | CTGGAG | 1 cut(s) | 227 |
| BpuEI | CTTGAG | 1 cut(s) | 141 |
| Bsa29I | ATCGAT | 1 cut(s) | 480 |
| Bse1I | ACTGG | 1 cut(s) | 244 |
| Bse3DI | GCAATG | 1 cut(s) | 271 |
| BseBI | CCWGG | 1 cut(s) | 131 |
| BseCI | ATCGAT | 1 cut(s) | 480 |
| BseGI | GGATG | 4 cut(s) | 139, 210, 238, 555 |
| BseMI | GCAATG | 1 cut(s) | 271 |
| BseNI | ACTGG | 1 cut(s) | 244 |
| BseSI | GKGCMC | 1 cut(s) | 763 |
| BseXI | GCAGC | 1 cut(s) | 191 |
| BshFI | GGCC | 1 cut(s) | 642 |
| BshNI | GGYRCC | 1 cut(s) | 653 |
| BshVI | ATCGAT | 1 cut(s) | 480 |
| BsiHKAI | GWGCWC | 2 cut(s) | 519, 778 |
| BsiHKCI | CYCGRG | 1 cut(s) | 119 |
| BsmAI | GTCTC | 1 cut(s) | 451 |
| BsmBI | CGTCTC | 1 cut(s) | 451 |
| BsnI | GGCC | 1 cut(s) | 642 |
| BsoBI | CYCGRG | 1 cut(s) | 119 |
| Bsp1286I | GDGCHC | 3 cut(s) | 519, 763, 778 |
| Bsp143I | GATC | 5 cut(s) | 399, 581, 751, 847, 859 |
| BspACI | CCGC | 4 cut(s) | 79, 316, 585, 795 |
| BspANI | GGCC | 1 cut(s) | 642 |
| BspDI | ATCGAT | 1 cut(s) | 480 |
| BspHI | TCATGA | 1 cut(s) | 511 |
| BspLI | GGNNCC | 1 cut(s) | 655 |
| BspPI | GGATC | 1 cut(s) | 576 |
| BspT107I | GGYRCC | 1 cut(s) | 653 |
| BsrDI | GCAATG | 1 cut(s) | 271 |
| BsrI | ACTGG | 1 cut(s) | 244 |
| BssMI | GATC | 5 cut(s) | 399, 581, 751, 847, 859 |
| BssSI | CACGAG | 1 cut(s) | 777 |
| Bst2BI | CACGAG | 1 cut(s) | 777 |
| Bst2UI | CCWGG | 1 cut(s) | 131 |
| Bst4CI | ACNGT | 1 cut(s) | 145 |
| BstC8I | GCNNGC | 1 cut(s) | 83 |
| BstDEI | CTNAG | 3 cut(s) | 184, 465, 666 |
| BstF5I | GGATG | 4 cut(s) | 139, 210, 238, 555 |
| BstKTI | GATC | 5 cut(s) | 402, 584, 754, 850, 862 |
| BstMAI | GTCTC | 1 cut(s) | 451 |
| BstMBI | GATC | 5 cut(s) | 399, 581, 751, 847, 859 |
| BstMWI | GCNNNNNNNGC | 4 cut(s) | 188, 197, 803, 824 |
| BstNI | CCWGG | 1 cut(s) | 131 |
| BstSCI | CCNGG | 1 cut(s) | 129 |
| BstSFI | CTRYAG | 1 cut(s) | 799 |
| BstSLI | GKGCMC | 1 cut(s) | 763 |
| BstV1I | GCAGC | 1 cut(s) | 191 |
| BstV2I | GAAGAC | 1 cut(s) | 431 |
| BstX2I | RGATCY | 1 cut(s) | 581 |
| BstXI | CCANNNNNNTGG | 1 cut(s) | 650 |
| BstYI | RGATCY | 1 cut(s) | 581 |
| Bsu15I | ATCGAT | 1 cut(s) | 480 |
| BsuRI | GGCC | 1 cut(s) | 642 |
| BsuTUI | ATCGAT | 1 cut(s) | 480 |
| BtsCI | GGATG | 4 cut(s) | 139, 210, 238, 555 |
| Cac8I | GCNNGC | 1 cut(s) | 83 |
| CciI | TCATGA | 1 cut(s) | 511 |
| Cfr13I | GGNCC | 1 cut(s) | 595 |
| ClaI | ATCGAT | 1 cut(s) | 480 |
| CseI | GACGC | 1 cut(s) | 692 |
| Csp6I | GTAC | 1 cut(s) | 247 |
| CviAII | CATG | 3 cut(s) | 512, 548, 644 |
| CviQI | GTAC | 1 cut(s) | 247 |
| DdeI | CTNAG | 3 cut(s) | 184, 465, 666 |
| DpnI | GATC | 5 cut(s) | 401, 583, 753, 849, 861 |
| DpnII | GATC | 5 cut(s) | 399, 581, 751, 847, 859 |
| EaeI | YGGCCR | 1 cut(s) | 640 |
| EciI | GGCGGA | 2 cut(s) | 68, 574 |
| Ecl136II | GAGCTC | 2 cut(s) | 517, 776 |
| Eco24I | GRGCYC | 2 cut(s) | 519, 778 |
| Eco32I | GATATC | 1 cut(s) | 76 |
| Eco47I | GGWCC | 1 cut(s) | 595 |
| Eco53kI | GAGCTC | 2 cut(s) | 517, 776 |
| Eco88I | CYCGRG | 1 cut(s) | 119 |
| EcoICRI | GAGCTC | 2 cut(s) | 517, 776 |
| EcoRI | GAATTC | 1 cut(s) | 383 |
| EcoRII | CCWGG | 1 cut(s) | 129 |
| EcoRV | GATATC | 1 cut(s) | 76 |
| EcoT38I | GRGCYC | 2 cut(s) | 519, 778 |
| Esp3I | CGTCTC | 1 cut(s) | 451 |
| FaeI | CATG | 3 cut(s) | 515, 551, 647 |
| FatI | CATG | 3 cut(s) | 511, 547, 643 |
| FauNDI | CATATG | 1 cut(s) | 228 |
| FbaI | TGATCA | 1 cut(s) | 751 |
| Fnu4HI | GCNGC | 1 cut(s) | 180 |
| FokI | GGATG | 4 cut(s) | 146, 197, 245, 542 |
| FriOI | GRGCYC | 2 cut(s) | 519, 778 |
| Fsp4HI | GCNGC | 1 cut(s) | 180 |
| FspBI | CTAG | 3 cut(s) | 126, 293, 863 |
| GluI | GCNGC | 1 cut(s) | 180 |
| GsuI | CTGGAG | 1 cut(s) | 227 |
| HaeIII | GGCC | 1 cut(s) | 642 |
| HgaI | GACGC | 1 cut(s) | 692 |
| Hin1II | CATG | 3 cut(s) | 515, 551, 647 |
| HincII | GTYRAC | 1 cut(s) | 608 |
| HindII | GTYRAC | 1 cut(s) | 608 |
| HindIII | AAGCTT | 1 cut(s) | 159 |
| HinfI | GANTC | 8 cut(s) | 102, 115, 220, 275, 283, 427, 477, 498 |
| HphI | GGTGA | 1 cut(s) | 784 |
| Hpy166II | GTNNAC | 1 cut(s) | 608 |
| Hpy188I | TCNGA | 1 cut(s) | 751 |
| Hpy8I | GTNNAC | 1 cut(s) | 608 |
| Hpy99I | CGWCG | 1 cut(s) | 415 |
| HpyCH4III | ACNGT | 1 cut(s) | 145 |
| HpyCH4IV | ACGT | 2 cut(s) | 413, 610 |
| HpyCH4V | TGCA | 3 cut(s) | 452, 491, 697 |
| HpyF10VI | GCNNNNNNNGC | 4 cut(s) | 188, 197, 803, 824 |
| HpyF3I | CTNAG | 3 cut(s) | 184, 465, 666 |
| HpySE526I | ACGT | 2 cut(s) | 413, 610 |
| Hsp92II | CATG | 3 cut(s) | 515, 551, 647 |
| Ksp22I | TGATCA | 1 cut(s) | 751 |
| Kzo9I | GATC | 5 cut(s) | 399, 581, 751, 847, 859 |
| LmnI | GCTCC | 3 cut(s) | 34, 246, 524 |
| LpnPI | CCDG | 9 cut(s) | 23, 46, 95, 116, 143, 257, 293, 300, 624 |
| Lsp1109I | GCAGC | 1 cut(s) | 191 |
| LweI | GCATC | 2 cut(s) | 94, 706 |
| MaeI | CTAG | 3 cut(s) | 126, 293, 863 |
| MaeII | ACGT | 2 cut(s) | 413, 610 |
| MaeIII | GTNAC | 4 cut(s) | 5, 272, 484, 790 |
| MalI | GATC | 5 cut(s) | 401, 583, 753, 849, 861 |
| MboI | GATC | 5 cut(s) | 399, 581, 751, 847, 859 |
| MboII | GAAGA | 6 cut(s) | 179, 436, 577, 794, 857, 866 |
| MflI | RGATCY | 1 cut(s) | 581 |
| MhlI | GDGCHC | 3 cut(s) | 519, 763, 778 |
| MlsI | TGGCCA | 1 cut(s) | 642 |
| MluCI | AATT | 4 cut(s) | 17, 383, 574, 786 |
| MluNI | TGGCCA | 1 cut(s) | 642 |
| MlyI | GAGTC | 3 cut(s) | 214, 269, 421 |
| MnlI | CCTC | 6 cut(s) | 181, 323, 596, 616, 620, 646 |
| Mox20I | TGGCCA | 1 cut(s) | 642 |
| MscI | TGGCCA | 1 cut(s) | 642 |
| MseI | TTAA | 2 cut(s) | 369, 377 |
| MslI | CAYNNNNRTG | 4 cut(s) | 215, 231, 560, 648 |
| Msp20I | TGGCCA | 1 cut(s) | 642 |
| MspR9I | CCNGG | 1 cut(s) | 131 |
| MvaI | CCWGG | 1 cut(s) | 131 |
| MwoI | GCNNNNNNNGC | 4 cut(s) | 188, 197, 803, 824 |
| NdeI | CATATG | 1 cut(s) | 228 |
| NdeII | GATC | 5 cut(s) | 399, 581, 751, 847, 859 |
| NlaIII | CATG | 3 cut(s) | 515, 551, 647 |
| NlaIV | GGNNCC | 1 cut(s) | 655 |
| NmuCI | GTSAC | 2 cut(s) | 272, 790 |
| PaeR7I | CTCGAG | 1 cut(s) | 119 |
| PagI | TCATGA | 1 cut(s) | 511 |
| PfeI | GAWTC | 5 cut(s) | 102, 115, 283, 477, 498 |
| PkrI | GCNGC | 1 cut(s) | 181 |
| PleI | GAGTC | 3 cut(s) | 214, 269, 421 |
| PpsI | GAGTC | 3 cut(s) | 214, 269, 421 |
| Psp124BI | GAGCTC | 2 cut(s) | 519, 778 |
| Psp6I | CCWGG | 1 cut(s) | 129 |
| PspGI | CCWGG | 1 cut(s) | 129 |
| PspN4I | GGNNCC | 1 cut(s) | 655 |
| PspPI | GGNCC | 1 cut(s) | 595 |
| PsuI | RGATCY | 1 cut(s) | 581 |
| RsaI | GTAC | 1 cut(s) | 248 |
| RsaNI | GTAC | 1 cut(s) | 247 |
| RseI | CAYNNNNRTG | 4 cut(s) | 215, 231, 560, 648 |
| SacI | GAGCTC | 2 cut(s) | 519, 778 |
| SaqAI | TTAA | 2 cut(s) | 369, 377 |
| SatI | GCNGC | 1 cut(s) | 180 |
| Sau3AI | GATC | 5 cut(s) | 399, 581, 751, 847, 859 |
| Sau96I | GGNCC | 1 cut(s) | 595 |
| SchI | GAGTC | 3 cut(s) | 214, 269, 421 |
| ScrFI | CCNGG | 1 cut(s) | 131 |
| SduI | GDGCHC | 3 cut(s) | 519, 763, 778 |
| SfaNI | GCATC | 2 cut(s) | 94, 706 |
| SfcI | CTRYAG | 1 cut(s) | 799 |
| Sfr274I | CTCGAG | 1 cut(s) | 119 |
| SinI | GGWCC | 1 cut(s) | 595 |
| SlaI | CTCGAG | 1 cut(s) | 119 |
| SmiMI | CAYNNNNRTG | 4 cut(s) | 215, 231, 560, 648 |
| SmlI | CTYRAG | 2 cut(s) | 119, 156 |
| SmoI | CTYRAG | 2 cut(s) | 119, 156 |
| Sse9I | AATT | 4 cut(s) | 17, 383, 574, 786 |
| SsiI | CCGC | 4 cut(s) | 79, 316, 585, 795 |
| SspMI | CTAG | 3 cut(s) | 126, 293, 863 |
| SstI | GAGCTC | 2 cut(s) | 519, 778 |
| StyD4I | CCNGG | 1 cut(s) | 129 |
| TaaI | ACNGT | 1 cut(s) | 145 |
| TaiI | ACGT | 2 cut(s) | 416, 613 |
| TaqI | TCGA | 6 cut(s) | 120, 353, 475, 480, 578, 736 |
| TasI | AATT | 4 cut(s) | 17, 383, 574, 786 |
| TfiI | GAWTC | 5 cut(s) | 102, 115, 283, 477, 498 |
| Tru1I | TTAA | 2 cut(s) | 369, 377 |
| Tru9I | TTAA | 2 cut(s) | 369, 377 |
| TseFI | GTSAC | 2 cut(s) | 272, 790 |
| TseI | GCWGC | 1 cut(s) | 179 |
| Tsp45I | GTSAC | 2 cut(s) | 272, 790 |
| TspDTI | ATGAA | 3 cut(s) | 500, 545, 578 |
| TspGWI | ACGGA | 2 cut(s) | 260, 608 |
| VpaK11BI | GGWCC | 1 cut(s) | 595 |
| XapI | RAATTY | 1 cut(s) | 383 |
| XbaI | TCTAGA | 1 cut(s) | 862 |
| XhoI | CTCGAG | 1 cut(s) | 119 |
| XspI | CTAG | 3 cut(s) | 126, 293, 863 |