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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AanI | TTATAA | 2 cut(s) | 555, 600 |
| Acc36I | ACCTGC | 1 cut(s) | 303 |
| Acc65I | GGTACC | 1 cut(s) | 630 |
| AccB1I | GGYRCC | 2 cut(s) | 91, 630 |
| AccBSI | CCGCTC | 1 cut(s) | 628 |
| AciI | CCGC | 3 cut(s) | 619, 628, 676 |
| AclWI | GGATC | 2 cut(s) | 111, 488 |
| AcuI | CTGAAG | 1 cut(s) | 483 |
| AcvI | CACGTG | 1 cut(s) | 720 |
| AcyI | GRCGYC | 1 cut(s) | 160 |
| AdeI | CACNNNGTG | 1 cut(s) | 723 |
| AfaI | GTAC | 2 cut(s) | 460, 632 |
| AfeI | AGCGCT | 1 cut(s) | 228 |
| AfiI | CCNNNNNNNGG | 6 cut(s) | 34, 363, 614, 615, 641, 685 |
| AflIII | ACRYGT | 1 cut(s) | 717 |
| AgsI | TTSAA | 6 cut(s) | 66, 277, 284, 313, 432, 561 |
| AhdI | GACNNNNNGTC | 1 cut(s) | 380 |
| AjnI | CCWGG | 2 cut(s) | 87, 684 |
| AjuI | GAANNNNNNNTTGG | 2 cut(s) | 225, 257 |
| AluBI | AGCT | 5 cut(s) | 217, 341, 397, 499, 521 |
| AluI | AGCT | 5 cut(s) | 217, 341, 397, 499, 521 |
| AlwI | GGATC | 2 cut(s) | 111, 488 |
| Aor51HI | AGCGCT | 1 cut(s) | 228 |
| AoxI | GGCC | 2 cut(s) | 563, 664 |
| ApaI | GGGCCC | 1 cut(s) | 668 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 342 |
| Asp718I | GGTACC | 1 cut(s) | 630 |
| AspLEI | GCGC | 2 cut(s) | 229, 300 |
| AspS9I | GGNCC | 3 cut(s) | 564, 664, 665 |
| AsuC2I | CCSGG | 1 cut(s) | 101 |
| BaeGI | GKGCMC | 1 cut(s) | 668 |
| BanI | GGYRCC | 2 cut(s) | 91, 630 |
| BanII | GRGCYC | 1 cut(s) | 668 |
| BarI | GAAGNNNNNNTAC | 2 cut(s) | 614, 646 |
| BauI | CACGAG | 2 cut(s) | 484, 542 |
| BbrPI | CACGTG | 1 cut(s) | 720 |
| BccI | CCATC | 1 cut(s) | 63 |
| BciT130I | CCWGG | 2 cut(s) | 89, 686 |
| BciVI | GTATCC | 1 cut(s) | 707 |
| BcnI | CCSGG | 1 cut(s) | 101 |
| BfaI | CTAG | 1 cut(s) | 230 |
| BfmI | CTRYAG | 1 cut(s) | 516 |
| BfoI | RGCGCY | 1 cut(s) | 230 |
| BfuAI | ACCTGC | 1 cut(s) | 303 |
| BfuI | GTATCC | 1 cut(s) | 707 |
| Bme1390I | CCNGG | 3 cut(s) | 89, 101, 686 |
| BmeRI | GACNNNNNGTC | 1 cut(s) | 380 |
| BmgT120I | GGNCC | 3 cut(s) | 564, 664, 665 |
| BmiI | GGNNCC | 3 cut(s) | 93, 632, 666 |
| BmrFI | CCNGG | 3 cut(s) | 89, 101, 686 |
| BpuEI | CTTGAG | 1 cut(s) | 123 |
| BpuMI | CCSGG | 1 cut(s) | 101 |
| BsaAI | YACGTR | 1 cut(s) | 720 |
| BsaHI | GRCGYC | 1 cut(s) | 160 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 179, 209 |
| Bsc4I | CCNNNNNNNGG | 6 cut(s) | 34, 363, 614, 615, 641, 685 |
| Bse3DI | GCAATG | 1 cut(s) | 253 |
| BseBI | CCWGG | 2 cut(s) | 89, 686 |
| BseGI | GGATG | 1 cut(s) | 537 |
| BseLI | CCNNNNNNNGG | 6 cut(s) | 34, 363, 614, 615, 641, 685 |
| BseMI | GCAATG | 1 cut(s) | 253 |
| BseMII | CTCAG | 2 cut(s) | 193, 513 |
| BseRI | GAGGAG | 1 cut(s) | 254 |
| BseSI | GKGCMC | 1 cut(s) | 668 |
| BshFI | GGCC | 2 cut(s) | 565, 666 |
| BshNI | GGYRCC | 2 cut(s) | 91, 630 |
| BsiSI | CCGG | 1 cut(s) | 101 |
| BslFI | GGGAC | 1 cut(s) | 669 |
| BslI | CCNNNNNNNGG | 6 cut(s) | 34, 363, 614, 615, 641, 685 |
| BsmFI | GGGAC | 1 cut(s) | 669 |
| BsmI | GAATGC | 1 cut(s) | 211 |
| BsnI | GGCC | 2 cut(s) | 565, 666 |
| Bsp120I | GGGCCC | 1 cut(s) | 664 |
| Bsp1286I | GDGCHC | 1 cut(s) | 668 |
| Bsp143I | GATC | 3 cut(s) | 103, 198, 480 |
| BspACI | CCGC | 3 cut(s) | 619, 628, 676 |
| BspANI | GGCC | 2 cut(s) | 565, 666 |
| BspCNI | CTCAG | 2 cut(s) | 192, 514 |
| BspHI | TCATGA | 1 cut(s) | 586 |
| BspLI | GGNNCC | 3 cut(s) | 93, 632, 666 |
| BspMI | ACCTGC | 1 cut(s) | 303 |
| BspPI | GGATC | 2 cut(s) | 111, 488 |
| BspQI | GCTCTTC | 2 cut(s) | 228, 348 |
| BspT107I | GGYRCC | 2 cut(s) | 91, 630 |
| BsrBI | CCGCTC | 1 cut(s) | 628 |
| BsrDI | GCAATG | 1 cut(s) | 253 |
| BssMI | GATC | 3 cut(s) | 103, 198, 480 |
| BssNI | GRCGYC | 1 cut(s) | 160 |
| BssSI | CACGAG | 2 cut(s) | 484, 542 |
| Bst2BI | CACGAG | 2 cut(s) | 484, 542 |
| Bst2UI | CCWGG | 2 cut(s) | 89, 686 |
| Bst4CI | ACNGT | 2 cut(s) | 32, 354 |
| Bst6I | CTCTTC | 2 cut(s) | 228, 348 |
| BstACI | GRCGYC | 1 cut(s) | 160 |
| BstBAI | YACGTR | 1 cut(s) | 720 |
| BstC8I | GCNNGC | 1 cut(s) | 135 |
| BstDEI | CTNAG | 4 cut(s) | 179, 522, 576, 636 |
| BstF5I | GGATG | 1 cut(s) | 537 |
| BstH2I | RGCGCY | 1 cut(s) | 230 |
| BstHHI | GCGC | 2 cut(s) | 229, 300 |
| BstKTI | GATC | 3 cut(s) | 106, 201, 483 |
| BstMBI | GATC | 3 cut(s) | 103, 198, 480 |
| BstMWI | GCNNNNNNNGC | 2 cut(s) | 235, 625 |
| BstNI | CCWGG | 2 cut(s) | 89, 686 |
| BstNSI | RCATGY | 1 cut(s) | 137 |
| BstSCI | CCNGG | 3 cut(s) | 87, 99, 684 |
| BstSFI | CTRYAG | 1 cut(s) | 516 |
| BstSLI | GKGCMC | 1 cut(s) | 668 |
| BstX2I | RGATCY | 1 cut(s) | 103 |
| BstXI | CCANNNNNNTGG | 1 cut(s) | 705 |
| BstYI | RGATCY | 1 cut(s) | 103 |
| BsuI | GTATCC | 1 cut(s) | 707 |
| BsuRI | GGCC | 2 cut(s) | 565, 666 |
| BtsCI | GGATG | 1 cut(s) | 537 |
| BveI | ACCTGC | 1 cut(s) | 303 |
| Cac8I | GCNNGC | 1 cut(s) | 135 |
| CciI | TCATGA | 1 cut(s) | 586 |
| CfoI | GCGC | 2 cut(s) | 229, 300 |
| Cfr13I | GGNCC | 3 cut(s) | 564, 664, 665 |
| CseI | GACGC | 1 cut(s) | 168 |
| Csp6I | GTAC | 2 cut(s) | 459, 631 |
| CviAII | CATG | 5 cut(s) | 134, 358, 530, 587, 650 |
| CviJI | RGCY | 8 cut(s) | 18, 217, 341, 397, 499, 521, 565, 666 |
| CviKI_1 | RGCY | 8 cut(s) | 18, 217, 341, 397, 499, 521, 565, 666 |
| CviQI | GTAC | 2 cut(s) | 459, 631 |
| DdeI | CTNAG | 4 cut(s) | 179, 522, 576, 636 |
| DpnI | GATC | 3 cut(s) | 105, 200, 482 |
| DpnII | GATC | 3 cut(s) | 103, 198, 480 |
| DraIII | CACNNNGTG | 1 cut(s) | 723 |
| DriI | GACNNNNNGTC | 1 cut(s) | 380 |
| Eam1104I | CTCTTC | 2 cut(s) | 228, 348 |
| Eam1105I | GACNNNNNGTC | 1 cut(s) | 380 |
| EarI | CTCTTC | 2 cut(s) | 228, 348 |
| EciI | GGCGGA | 1 cut(s) | 634 |
| Eco24I | GRGCYC | 1 cut(s) | 668 |
| Eco47III | AGCGCT | 1 cut(s) | 228 |
| Eco57I | CTGAAG | 1 cut(s) | 483 |
| Eco72I | CACGTG | 1 cut(s) | 720 |
| EcoRII | CCWGG | 2 cut(s) | 87, 684 |
| EcoT38I | GRGCYC | 1 cut(s) | 668 |
| FaeI | CATG | 5 cut(s) | 137, 361, 533, 590, 653 |
| FaqI | GGGAC | 1 cut(s) | 669 |
| FatI | CATG | 5 cut(s) | 133, 357, 529, 586, 649 |
| FauNDI | CATATG | 1 cut(s) | 165 |
| FokI | GGATG | 1 cut(s) | 524 |
| FriOI | GRGCYC | 1 cut(s) | 668 |
| FspBI | CTAG | 1 cut(s) | 230 |
| GlaI | GCGC | 2 cut(s) | 228, 299 |
| HaeII | RGCGCY | 1 cut(s) | 230 |
| HaeIII | GGCC | 2 cut(s) | 565, 666 |
| HapII | CCGG | 1 cut(s) | 101 |
| HgaI | GACGC | 1 cut(s) | 168 |
| HhaI | GCGC | 2 cut(s) | 229, 300 |
| Hin1I | GRCGYC | 1 cut(s) | 160 |
| Hin1II | CATG | 5 cut(s) | 137, 361, 533, 590, 653 |
| Hin6I | GCGC | 2 cut(s) | 227, 298 |
| HinP1I | GCGC | 2 cut(s) | 227, 298 |
| HinfI | GANTC | 2 cut(s) | 8, 257 |
| HpaII | CCGG | 1 cut(s) | 101 |
| Hpy166II | GTNNAC | 1 cut(s) | 374 |
| Hpy188I | TCNGA | 3 cut(s) | 22, 182, 337 |
| Hpy188III | TCNNGA | 5 cut(s) | 151, 202, 484, 544, 587 |
| Hpy8I | GTNNAC | 1 cut(s) | 374 |
| Hpy99I | CGWCG | 1 cut(s) | 162 |
| HpyAV | CCTTC | 5 cut(s) | 271, 430, 608, 616, 683 |
| HpyCH4III | ACNGT | 2 cut(s) | 32, 354 |
| HpyCH4IV | ACGT | 2 cut(s) | 658, 719 |
| HpyCH4V | TGCA | 3 cut(s) | 118, 209, 605 |
| HpyF10VI | GCNNNNNNNGC | 2 cut(s) | 235, 625 |
| HpyF3I | CTNAG | 4 cut(s) | 179, 522, 576, 636 |
| HpySE526I | ACGT | 2 cut(s) | 658, 719 |
| Hsp92I | GRCGYC | 1 cut(s) | 160 |
| Hsp92II | CATG | 5 cut(s) | 137, 361, 533, 590, 653 |
| HspAI | GCGC | 2 cut(s) | 227, 298 |
| KpnI | GGTACC | 1 cut(s) | 634 |
| Kzo9I | GATC | 3 cut(s) | 103, 198, 480 |
| LguI | GCTCTTC | 2 cut(s) | 228, 348 |
| LmnI | GCTCC | 1 cut(s) | 625 |
| LpnPI | CCDG | 9 cut(s) | 74, 101, 114, 282, 308, 393, 459, 671, 698 |
| MaeI | CTAG | 1 cut(s) | 230 |
| MaeII | ACGT | 2 cut(s) | 658, 719 |
| MaeIII | GTNAC | 2 cut(s) | 37, 382 |
| MalI | GATC | 3 cut(s) | 105, 200, 482 |
| MbiI | CCGCTC | 1 cut(s) | 628 |
| MboI | GATC | 3 cut(s) | 103, 198, 480 |
| MboII | GAAGA | 2 cut(s) | 245, 335 |
| MflI | RGATCY | 1 cut(s) | 103 |
| MhlI | GDGCHC | 1 cut(s) | 668 |
| MluCI | AATT | 5 cut(s) | 331, 399, 550, 556, 595 |
| MlyI | GAGTC | 1 cut(s) | 2 |
| MnlI | CCTC | 7 cut(s) | 272, 275, 357, 480, 551, 583, 646 |
| MroXI | GAANNNNTTC | 1 cut(s) | 342 |
| MslI | CAYNNNNRTG | 1 cut(s) | 542 |
| MspI | CCGG | 1 cut(s) | 101 |
| MspR9I | CCNGG | 3 cut(s) | 89, 101, 686 |
| Mva1269I | GAATGC | 1 cut(s) | 211 |
| MvaI | CCWGG | 2 cut(s) | 89, 686 |
| MwoI | GCNNNNNNNGC | 2 cut(s) | 235, 625 |
| NciI | CCSGG | 1 cut(s) | 101 |
| NdeI | CATATG | 1 cut(s) | 165 |
| NdeII | GATC | 3 cut(s) | 103, 198, 480 |
| NlaIII | CATG | 5 cut(s) | 137, 361, 533, 590, 653 |
| NlaIV | GGNNCC | 3 cut(s) | 93, 632, 666 |
| NmuCI | GTSAC | 1 cut(s) | 382 |
| NspI | RCATGY | 1 cut(s) | 137 |
| PaeI | GCATGC | 1 cut(s) | 137 |
| PagI | TCATGA | 1 cut(s) | 586 |
| PciSI | GCTCTTC | 2 cut(s) | 228, 348 |
| PctI | GAATGC | 1 cut(s) | 211 |
| PdmI | GAANNNNTTC | 1 cut(s) | 342 |
| PfeI | GAWTC | 1 cut(s) | 257 |
| PleI | GAGTC | 1 cut(s) | 2 |
| PmaCI | CACGTG | 1 cut(s) | 720 |
| PmlI | CACGTG | 1 cut(s) | 720 |
| PpsI | GAGTC | 1 cut(s) | 2 |
| Ppu21I | YACGTR | 1 cut(s) | 720 |
| PsiI | TTATAA | 2 cut(s) | 555, 600 |
| Psp6I | CCWGG | 2 cut(s) | 87, 684 |
| PspCI | CACGTG | 1 cut(s) | 720 |
| PspGI | CCWGG | 2 cut(s) | 87, 684 |
| PspN4I | GGNNCC | 3 cut(s) | 93, 632, 666 |
| PspOMI | GGGCCC | 1 cut(s) | 664 |
| PspPI | GGNCC | 3 cut(s) | 564, 664, 665 |
| PsuI | RGATCY | 1 cut(s) | 103 |
| RsaI | GTAC | 2 cut(s) | 460, 632 |
| RsaNI | GTAC | 2 cut(s) | 459, 631 |
| RseI | CAYNNNNRTG | 1 cut(s) | 542 |
| SapI | GCTCTTC | 2 cut(s) | 228, 348 |
| Sau3AI | GATC | 3 cut(s) | 103, 198, 480 |
| Sau96I | GGNCC | 3 cut(s) | 564, 664, 665 |
| SchI | GAGTC | 1 cut(s) | 2 |
| ScrFI | CCNGG | 3 cut(s) | 89, 101, 686 |
| SduI | GDGCHC | 1 cut(s) | 668 |
| SfcI | CTRYAG | 1 cut(s) | 516 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 542 |
| SmlI | CTYRAG | 1 cut(s) | 138 |
| SmoI | CTYRAG | 1 cut(s) | 138 |
| SphI | GCATGC | 1 cut(s) | 137 |
| Sse9I | AATT | 5 cut(s) | 331, 399, 550, 556, 595 |
| SsiI | CCGC | 3 cut(s) | 619, 628, 676 |
| SspI | AATATT | 1 cut(s) | 75 |
| SspMI | CTAG | 1 cut(s) | 230 |
| StyD4I | CCNGG | 3 cut(s) | 87, 99, 684 |
| TaaI | ACNGT | 2 cut(s) | 32, 354 |
| TaiI | ACGT | 2 cut(s) | 661, 722 |
| TaqI | TCGA | 1 cut(s) | 197 |
| TasI | AATT | 5 cut(s) | 331, 399, 550, 556, 595 |
| TfiI | GAWTC | 1 cut(s) | 257 |
| TseFI | GTSAC | 1 cut(s) | 382 |
| Tsp45I | GTSAC | 1 cut(s) | 382 |
| TspDTI | ATGAA | 2 cut(s) | 482, 575 |
| TspGWI | ACGGA | 1 cut(s) | 493 |
| XceI | RCATGY | 1 cut(s) | 137 |
| XmnI | GAANNNNTTC | 1 cut(s) | 342 |
| XspI | CTAG | 1 cut(s) | 230 |