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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AanI | TTATAA | 1 cut(s) | 273 |
| AccI | GTMKAC | 1 cut(s) | 613 |
| AciI | CCGC | 1 cut(s) | 67 |
| AclWI | GGATC | 1 cut(s) | 299 |
| AcuI | CTGAAG | 1 cut(s) | 540 |
| AfaI | GTAC | 1 cut(s) | 134 |
| AfiI | CCNNNNNNNGG | 1 cut(s) | 288 |
| AgsI | TTSAA | 3 cut(s) | 124, 248, 347 |
| AhlI | ACTAGT | 1 cut(s) | 539 |
| AjiI | CACGTC | 2 cut(s) | 560, 602 |
| AluBI | AGCT | 3 cut(s) | 79, 160, 469 |
| AluI | AGCT | 3 cut(s) | 79, 160, 469 |
| Alw21I | GWGCWC | 3 cut(s) | 210, 220, 471 |
| Alw26I | GTCTC | 1 cut(s) | 495 |
| AlwI | GGATC | 1 cut(s) | 299 |
| AoxI | GGCC | 2 cut(s) | 34, 333 |
| ApeKI | GCWGC | 1 cut(s) | 391 |
| AspLEI | GCGC | 2 cut(s) | 102, 243 |
| AspS9I | GGNCC | 2 cut(s) | 34, 503 |
| AsuHPI | GGTGA | 3 cut(s) | 182, 286, 406 |
| AvaII | GGWCC | 1 cut(s) | 503 |
| BanII | GRGCYC | 1 cut(s) | 471 |
| BarI | GAAGNNNNNNTAC | 2 cut(s) | 116, 148 |
| BbsI | GAAGAC | 1 cut(s) | 434 |
| Bbv12I | GWGCWC | 3 cut(s) | 210, 220, 471 |
| BbvI | GCAGC | 1 cut(s) | 403 |
| BccI | CCATC | 3 cut(s) | 114, 120, 492 |
| BcoDI | GTCTC | 1 cut(s) | 495 |
| BcuI | ACTAGT | 1 cut(s) | 539 |
| BfaI | CTAG | 2 cut(s) | 213, 540 |
| BfmI | CTRYAG | 1 cut(s) | 498 |
| BisI | GCNGC | 1 cut(s) | 392 |
| BlpI | GCTNAGC | 1 cut(s) | 453 |
| BlsI | GCNGC | 1 cut(s) | 393 |
| BmcAI | AGTACT | 1 cut(s) | 134 |
| Bme18I | GGWCC | 1 cut(s) | 503 |
| BmgBI | CACGTC | 2 cut(s) | 560, 602 |
| BmgT120I | GGNCC | 2 cut(s) | 34, 503 |
| BmsI | GCATC | 2 cut(s) | 244, 330 |
| BpiI | GAAGAC | 1 cut(s) | 434 |
| Bpu1102I | GCTNAGC | 1 cut(s) | 453 |
| BpuEI | CTTGAG | 1 cut(s) | 176 |
| BsaJI | CCNNGG | 2 cut(s) | 30, 589 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 309, 339 |
| Bsc4I | CCNNNNNNNGG | 1 cut(s) | 288 |
| BseDI | CCNNGG | 2 cut(s) | 30, 589 |
| BseLI | CCNNNNNNNGG | 1 cut(s) | 288 |
| BseMII | CTCAG | 3 cut(s) | 71, 344, 444 |
| BseXI | GCAGC | 1 cut(s) | 403 |
| BshFI | GGCC | 2 cut(s) | 36, 335 |
| BsiHKAI | GWGCWC | 3 cut(s) | 210, 220, 471 |
| BslFI | GGGAC | 1 cut(s) | 48 |
| BslI | CCNNNNNNNGG | 1 cut(s) | 288 |
| BsmAI | GTCTC | 1 cut(s) | 495 |
| BsmFI | GGGAC | 1 cut(s) | 48 |
| BsmI | GAATGC | 1 cut(s) | 532 |
| BsnI | GGCC | 2 cut(s) | 36, 335 |
| Bsp1286I | GDGCHC | 3 cut(s) | 210, 220, 471 |
| Bsp143I | GATC | 2 cut(s) | 291, 427 |
| Bsp1720I | GCTNAGC | 1 cut(s) | 453 |
| BspACI | CCGC | 1 cut(s) | 67 |
| BspANI | GGCC | 2 cut(s) | 36, 335 |
| BspCNI | CTCAG | 3 cut(s) | 70, 343, 445 |
| BspPI | GGATC | 1 cut(s) | 299 |
| BssECI | CCNNGG | 2 cut(s) | 30, 589 |
| BssMI | GATC | 2 cut(s) | 291, 427 |
| BssT1I | CCWWGG | 1 cut(s) | 30 |
| Bst4CI | ACNGT | 5 cut(s) | 142, 202, 257, 325, 590 |
| BstDEI | CTNAG | 3 cut(s) | 57, 330, 453 |
| BstDSI | CCRYGG | 1 cut(s) | 589 |
| BstHHI | GCGC | 2 cut(s) | 102, 243 |
| BstKTI | GATC | 2 cut(s) | 294, 430 |
| BstMAI | GTCTC | 1 cut(s) | 495 |
| BstMBI | GATC | 2 cut(s) | 291, 427 |
| BstSFI | CTRYAG | 1 cut(s) | 498 |
| BstV1I | GCAGC | 1 cut(s) | 403 |
| BstV2I | GAAGAC | 1 cut(s) | 434 |
| BstXI | CCANNNNNNTGG | 1 cut(s) | 31 |
| BsuRI | GGCC | 2 cut(s) | 36, 335 |
| BtgI | CCRYGG | 1 cut(s) | 589 |
| BtrI | CACGTC | 2 cut(s) | 560, 602 |
| CfoI | GCGC | 2 cut(s) | 102, 243 |
| Cfr13I | GGNCC | 2 cut(s) | 34, 503 |
| CseI | GACGC | 2 cut(s) | 50, 241 |
| Csp6I | GTAC | 1 cut(s) | 133 |
| CspCI | CAANNNNNGTGG | 2 cut(s) | 541, 576 |
| CviAII | CATG | 4 cut(s) | 283, 337, 368, 572 |
| CviJI | RGCY | 9 cut(s) | 22, 36, 79, 160, 335, 452, 469, 581, 624 |
| CviKI_1 | RGCY | 9 cut(s) | 22, 36, 79, 160, 335, 452, 469, 581, 624 |
| CviQI | GTAC | 1 cut(s) | 133 |
| DdeI | CTNAG | 3 cut(s) | 57, 330, 453 |
| DpnI | GATC | 2 cut(s) | 293, 429 |
| DpnII | GATC | 2 cut(s) | 291, 427 |
| Ecl136II | GAGCTC | 1 cut(s) | 469 |
| Eco130I | CCWWGG | 1 cut(s) | 30 |
| Eco24I | GRGCYC | 1 cut(s) | 471 |
| Eco47I | GGWCC | 1 cut(s) | 503 |
| Eco53kI | GAGCTC | 1 cut(s) | 469 |
| Eco57I | CTGAAG | 1 cut(s) | 540 |
| EcoICRI | GAGCTC | 1 cut(s) | 469 |
| EcoT14I | CCWWGG | 1 cut(s) | 30 |
| EcoT38I | GRGCYC | 1 cut(s) | 471 |
| ErhI | CCWWGG | 1 cut(s) | 30 |
| FaeI | CATG | 4 cut(s) | 286, 340, 371, 575 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 138, 170 |
| FaqI | GGGAC | 1 cut(s) | 48 |
| FatI | CATG | 4 cut(s) | 282, 336, 367, 571 |
| FauI | CCCGC | 1 cut(s) | 74 |
| FblI | GTMKAC | 1 cut(s) | 613 |
| Fnu4HI | GCNGC | 1 cut(s) | 392 |
| FriOI | GRGCYC | 1 cut(s) | 471 |
| Fsp4HI | GCNGC | 1 cut(s) | 392 |
| FspBI | CTAG | 2 cut(s) | 213, 540 |
| GlaI | GCGC | 2 cut(s) | 101, 242 |
| GluI | GCNGC | 1 cut(s) | 392 |
| HaeIII | GGCC | 2 cut(s) | 36, 335 |
| HgaI | GACGC | 2 cut(s) | 50, 241 |
| HhaI | GCGC | 2 cut(s) | 102, 243 |
| Hin1II | CATG | 4 cut(s) | 286, 340, 371, 575 |
| Hin6I | GCGC | 2 cut(s) | 100, 241 |
| HinP1I | GCGC | 2 cut(s) | 100, 241 |
| HincII | GTYRAC | 1 cut(s) | 614 |
| HindII | GTYRAC | 1 cut(s) | 614 |
| HinfI | GANTC | 2 cut(s) | 307, 411 |
| HphI | GGTGA | 3 cut(s) | 182, 286, 406 |
| Hpy166II | GTNNAC | 1 cut(s) | 614 |
| Hpy188I | TCNGA | 1 cut(s) | 427 |
| Hpy188III | TCNNGA | 4 cut(s) | 16, 45, 248, 289 |
| Hpy8I | GTNNAC | 1 cut(s) | 614 |
| HpyAV | CCTTC | 4 cut(s) | 118, 254, 364, 561 |
| HpyCH4III | ACNGT | 5 cut(s) | 142, 202, 257, 325, 590 |
| HpyCH4IV | ACGT | 3 cut(s) | 220, 559, 601 |
| HpyCH4V | TGCA | 1 cut(s) | 4 |
| HpyF3I | CTNAG | 3 cut(s) | 57, 330, 453 |
| HpySE526I | ACGT | 3 cut(s) | 220, 559, 601 |
| Hsp92II | CATG | 4 cut(s) | 286, 340, 371, 575 |
| HspAI | GCGC | 2 cut(s) | 100, 241 |
| Kzo9I | GATC | 2 cut(s) | 291, 427 |
| LmnI | GCTCC | 1 cut(s) | 213 |
| LpnPI | CCDG | 8 cut(s) | 101, 153, 274, 317, 431, 486, 531, 593 |
| Lsp1109I | GCAGC | 1 cut(s) | 403 |
| LweI | GCATC | 2 cut(s) | 244, 330 |
| MaeI | CTAG | 2 cut(s) | 213, 540 |
| MaeII | ACGT | 3 cut(s) | 220, 559, 601 |
| MaeIII | GTNAC | 2 cut(s) | 325, 584 |
| MalI | GATC | 2 cut(s) | 293, 429 |
| MboI | GATC | 2 cut(s) | 291, 427 |
| MboII | GAAGA | 2 cut(s) | 434, 490 |
| MhlI | GDGCHC | 3 cut(s) | 210, 220, 471 |
| MluCI | AATT | 1 cut(s) | 274 |
| MmeI | TCCRAC | 1 cut(s) | 627 |
| MnlI | CCTC | 3 cut(s) | 307, 382, 401 |
| MseI | TTAA | 3 cut(s) | 137, 473, 626 |
| MslI | CAYNNNNRTG | 1 cut(s) | 600 |
| Mva1269I | GAATGC | 1 cut(s) | 532 |
| NdeII | GATC | 2 cut(s) | 291, 427 |
| NlaIII | CATG | 4 cut(s) | 286, 340, 371, 575 |
| PctI | GAATGC | 1 cut(s) | 532 |
| PfeI | GAWTC | 2 cut(s) | 307, 411 |
| PflFI | GACNNNGTC | 1 cut(s) | 603 |
| PkrI | GCNGC | 1 cut(s) | 393 |
| PsiI | TTATAA | 1 cut(s) | 273 |
| Psp124BI | GAGCTC | 1 cut(s) | 471 |
| PspPI | GGNCC | 2 cut(s) | 34, 503 |
| PsyI | GACNNNGTC | 1 cut(s) | 603 |
| RsaI | GTAC | 1 cut(s) | 134 |
| RsaNI | GTAC | 1 cut(s) | 133 |
| RseI | CAYNNNNRTG | 1 cut(s) | 600 |
| SacI | GAGCTC | 1 cut(s) | 471 |
| SalI | GTCGAC | 1 cut(s) | 612 |
| SaqAI | TTAA | 3 cut(s) | 137, 473, 626 |
| SatI | GCNGC | 1 cut(s) | 392 |
| Sau3AI | GATC | 2 cut(s) | 291, 427 |
| Sau96I | GGNCC | 2 cut(s) | 34, 503 |
| ScaI | AGTACT | 1 cut(s) | 134 |
| SduI | GDGCHC | 3 cut(s) | 210, 220, 471 |
| SfaNI | GCATC | 2 cut(s) | 244, 330 |
| SfcI | CTRYAG | 1 cut(s) | 498 |
| SinI | GGWCC | 1 cut(s) | 503 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 600 |
| SmlI | CTYRAG | 1 cut(s) | 155 |
| SmoI | CTYRAG | 1 cut(s) | 155 |
| SpeI | ACTAGT | 1 cut(s) | 539 |
| Sse9I | AATT | 1 cut(s) | 274 |
| SsiI | CCGC | 1 cut(s) | 67 |
| SspI | AATATT | 1 cut(s) | 422 |
| SspMI | CTAG | 2 cut(s) | 213, 540 |
| SstI | GAGCTC | 1 cut(s) | 471 |
| StyI | CCWWGG | 1 cut(s) | 30 |
| TaaI | ACNGT | 5 cut(s) | 142, 202, 257, 325, 590 |
| TaiI | ACGT | 3 cut(s) | 223, 562, 604 |
| TaqI | TCGA | 2 cut(s) | 17, 613 |
| TasI | AATT | 1 cut(s) | 274 |
| TatI | WGTACW | 1 cut(s) | 132 |
| TfiI | GAWTC | 2 cut(s) | 307, 411 |
| Tru1I | TTAA | 3 cut(s) | 137, 473, 626 |
| Tru9I | TTAA | 3 cut(s) | 137, 473, 626 |
| TseI | GCWGC | 1 cut(s) | 391 |
| TspDTI | ATGAA | 4 cut(s) | 240, 320, 356, 491 |
| Tth111I | GACNNNGTC | 1 cut(s) | 603 |
| VpaK11BI | GGWCC | 1 cut(s) | 503 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 159 |
| XmiI | GTMKAC | 1 cut(s) | 613 |
| XspI | CTAG | 2 cut(s) | 213, 540 |
| ZrmI | AGTACT | 1 cut(s) | 134 |