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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AarI | CACCTGC | 1 cut(s) | 410 |
| Acc36I | ACCTGC | 1 cut(s) | 410 |
| AccB1I | GGYRCC | 1 cut(s) | 764 |
| AccII | CGCG | 1 cut(s) | 864 |
| AccIII | TCCGGA | 1 cut(s) | 844 |
| AciI | CCGC | 6 cut(s) | 30, 33, 263, 289, 292, 405 |
| AcoI | YGGCCR | 2 cut(s) | 260, 631 |
| AcuI | CTGAAG | 2 cut(s) | 299, 366 |
| AfiI | CCNNNNNNNGG | 3 cut(s) | 70, 481, 875 |
| AflII | CTTAAG | 1 cut(s) | 506 |
| AgsI | TTSAA | 5 cut(s) | 14, 44, 439, 584, 705 |
| AjiI | CACGTC | 1 cut(s) | 353 |
| AloI | GAACNNNNNNTCC | 2 cut(s) | 542, 574 |
| AluBI | AGCT | 7 cut(s) | 152, 191, 380, 423, 572, 757, 779 |
| AluI | AGCT | 7 cut(s) | 152, 191, 380, 423, 572, 757, 779 |
| Alw21I | GWGCWC | 1 cut(s) | 558 |
| Alw26I | GTCTC | 3 cut(s) | 449, 618, 691 |
| AlwNI | CAGNNNCTG | 2 cut(s) | 191, 402 |
| Aor13HI | TCCGGA | 1 cut(s) | 844 |
| AoxI | GGCC | 5 cut(s) | 93, 113, 240, 260, 631 |
| ApeKI | GCWGC | 3 cut(s) | 188, 191, 194 |
| AspLEI | GCGC | 6 cut(s) | 79, 371, 390, 467, 498, 866 |
| AspS9I | GGNCC | 3 cut(s) | 114, 200, 484 |
| AsuHPI | GGTGA | 3 cut(s) | 75, 202, 219 |
| AsuII | TTCGAA | 1 cut(s) | 147 |
| AvaII | GGWCC | 2 cut(s) | 200, 484 |
| AxyI | CCTNAGG | 1 cut(s) | 870 |
| BalI | TGGCCA | 1 cut(s) | 633 |
| BanI | GGYRCC | 1 cut(s) | 764 |
| BauI | CACGAG | 1 cut(s) | 742 |
| Bbv12I | GWGCWC | 1 cut(s) | 558 |
| BbvI | GCAGC | 3 cut(s) | 178, 200, 206 |
| BccI | CCATC | 3 cut(s) | 509, 539, 613 |
| BciVI | GTATCC | 1 cut(s) | 464 |
| BcoDI | GTCTC | 3 cut(s) | 449, 618, 691 |
| BfaI | CTAG | 3 cut(s) | 452, 524, 543 |
| BfmI | CTRYAG | 1 cut(s) | 192 |
| BfoI | RGCGCY | 3 cut(s) | 80, 372, 391 |
| BfrI | CTTAAG | 1 cut(s) | 506 |
| BfuAI | ACCTGC | 1 cut(s) | 410 |
| BfuI | GTATCC | 1 cut(s) | 464 |
| BglII | AGATCT | 1 cut(s) | 46 |
| BisI | GCNGC | 6 cut(s) | 33, 189, 192, 195, 263, 292 |
| BlsI | GCNGC | 6 cut(s) | 34, 190, 193, 196, 264, 293 |
| Bme18I | GGWCC | 2 cut(s) | 200, 484 |
| BmgBI | CACGTC | 1 cut(s) | 353 |
| BmgT120I | GGNCC | 3 cut(s) | 114, 200, 484 |
| BmiI | GGNNCC | 5 cut(s) | 202, 217, 237, 485, 766 |
| BmrI | ACTGGG | 1 cut(s) | 367 |
| BmsI | GCATC | 3 cut(s) | 307, 347, 586 |
| BmuI | ACTGGG | 1 cut(s) | 367 |
| BpmI | CTGGAG | 2 cut(s) | 40, 345 |
| Bpu14I | TTCGAA | 1 cut(s) | 147 |
| BsaBI | GATNNNNATC | 1 cut(s) | 656 |
| BsaWI | WCCGGW | 4 cut(s) | 212, 232, 414, 844 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 542, 572 |
| Bsc4I | CCNNNNNNNGG | 3 cut(s) | 70, 481, 875 |
| Bse118I | RCCGGY | 1 cut(s) | 238 |
| Bse1I | ACTGG | 4 cut(s) | 342, 362, 373, 466 |
| Bse21I | CCTNAGG | 1 cut(s) | 870 |
| Bse8I | GATNNNNATC | 1 cut(s) | 656 |
| BseAI | TCCGGA | 1 cut(s) | 844 |
| BseGI | GGATG | 3 cut(s) | 338, 423, 531 |
| BseJI | GATNNNNATC | 1 cut(s) | 656 |
| BseLI | CCNNNNNNNGG | 3 cut(s) | 70, 481, 875 |
| BseNI | ACTGG | 4 cut(s) | 342, 362, 373, 466 |
| BseRI | GAGGAG | 1 cut(s) | 43 |
| BseX3I | CGGCCG | 1 cut(s) | 260 |
| BseXI | GCAGC | 3 cut(s) | 178, 200, 206 |
| Bsh1236I | CGCG | 1 cut(s) | 864 |
| Bsh1285I | CGRYCG | 1 cut(s) | 263 |
| BshFI | GGCC | 5 cut(s) | 95, 115, 242, 262, 633 |
| BshNI | GGYRCC | 1 cut(s) | 764 |
| BsiEI | CGRYCG | 1 cut(s) | 263 |
| BsiHKAI | GWGCWC | 1 cut(s) | 558 |
| BsiSI | CCGG | 6 cut(s) | 198, 213, 233, 239, 415, 845 |
| BslI | CCNNNNNNNGG | 3 cut(s) | 70, 481, 875 |
| BsmAI | GTCTC | 3 cut(s) | 449, 618, 691 |
| BsmBI | CGTCTC | 1 cut(s) | 691 |
| BsnI | GGCC | 5 cut(s) | 95, 115, 242, 262, 633 |
| Bsp119I | TTCGAA | 1 cut(s) | 147 |
| Bsp1286I | GDGCHC | 1 cut(s) | 558 |
| Bsp13I | TCCGGA | 1 cut(s) | 844 |
| Bsp143I | GATC | 3 cut(s) | 46, 207, 657 |
| BspACI | CCGC | 6 cut(s) | 30, 33, 263, 289, 292, 405 |
| BspANI | GGCC | 5 cut(s) | 95, 115, 242, 262, 633 |
| BspEI | TCCGGA | 1 cut(s) | 844 |
| BspFNI | CGCG | 1 cut(s) | 864 |
| BspHI | TCATGA | 1 cut(s) | 751 |
| BspLI | GGNNCC | 5 cut(s) | 202, 217, 237, 485, 766 |
| BspMAI | CTGCAG | 1 cut(s) | 196 |
| BspMI | ACCTGC | 1 cut(s) | 410 |
| BspQI | GCTCTTC | 1 cut(s) | 606 |
| BspT104I | TTCGAA | 1 cut(s) | 147 |
| BspT107I | GGYRCC | 1 cut(s) | 764 |
| BspTI | CTTAAG | 1 cut(s) | 506 |
| BsrFI | RCCGGY | 1 cut(s) | 238 |
| BsrI | ACTGG | 4 cut(s) | 342, 362, 373, 466 |
| BssAI | RCCGGY | 1 cut(s) | 238 |
| BssMI | GATC | 3 cut(s) | 46, 207, 657 |
| BssSI | CACGAG | 1 cut(s) | 742 |
| Bst2BI | CACGAG | 1 cut(s) | 742 |
| Bst6I | CTCTTC | 1 cut(s) | 606 |
| BstAFI | CTTAAG | 1 cut(s) | 506 |
| BstAPI | GCANNNNNTGC | 1 cut(s) | 304 |
| BstBI | TTCGAA | 1 cut(s) | 147 |
| BstC8I | GCNNGC | 3 cut(s) | 154, 296, 570 |
| BstDEI | CTNAG | 2 cut(s) | 834, 870 |
| BstENI | CCTNNNNNAGG | 1 cut(s) | 873 |
| BstF5I | GGATG | 3 cut(s) | 338, 423, 531 |
| BstFNI | CGCG | 1 cut(s) | 864 |
| BstH2I | RGCGCY | 3 cut(s) | 80, 372, 391 |
| BstHHI | GCGC | 6 cut(s) | 79, 371, 390, 467, 498, 866 |
| BstKTI | GATC | 3 cut(s) | 49, 210, 660 |
| BstMAI | GTCTC | 3 cut(s) | 449, 618, 691 |
| BstMBI | GATC | 3 cut(s) | 46, 207, 657 |
| BstMCI | CGRYCG | 1 cut(s) | 263 |
| BstMWI | GCNNNNNNNGC | 6 cut(s) | 194, 304, 355, 377, 396, 584 |
| BstSFI | CTRYAG | 1 cut(s) | 192 |
| BstUI | CGCG | 1 cut(s) | 864 |
| BstV1I | GCAGC | 3 cut(s) | 178, 200, 206 |
| BstX2I | RGATCY | 1 cut(s) | 46 |
| BstYI | RGATCY | 1 cut(s) | 46 |
| BstZI | CGGCCG | 1 cut(s) | 260 |
| Bsu36I | CCTNAGG | 1 cut(s) | 870 |
| BsuI | GTATCC | 1 cut(s) | 464 |
| BsuRI | GGCC | 5 cut(s) | 95, 115, 242, 262, 633 |
| BtrI | CACGTC | 1 cut(s) | 353 |
| BtsCI | GGATG | 3 cut(s) | 338, 423, 531 |
| BtsIMutI | CAGTG | 1 cut(s) | 281 |
| BveI | ACCTGC | 1 cut(s) | 410 |
| Cac8I | GCNNGC | 3 cut(s) | 154, 296, 570 |
| CaiI | CAGNNNCTG | 2 cut(s) | 191, 402 |
| CciI | TCATGA | 1 cut(s) | 751 |
| CfoI | GCGC | 6 cut(s) | 79, 371, 390, 467, 498, 866 |
| Cfr10I | RCCGGY | 1 cut(s) | 238 |
| Cfr13I | GGNCC | 3 cut(s) | 114, 200, 484 |
| CviAII | CATG | 4 cut(s) | 392, 694, 752, 769 |
| DdeI | CTNAG | 2 cut(s) | 834, 870 |
| DpnI | GATC | 3 cut(s) | 48, 209, 659 |
| DpnII | GATC | 3 cut(s) | 46, 207, 657 |
| EaeI | YGGCCR | 2 cut(s) | 260, 631 |
| EagI | CGGCCG | 1 cut(s) | 260 |
| Eam1104I | CTCTTC | 1 cut(s) | 606 |
| EarI | CTCTTC | 1 cut(s) | 606 |
| EciI | GGCGGA | 1 cut(s) | 19 |
| EclXI | CGGCCG | 1 cut(s) | 260 |
| Eco32I | GATATC | 1 cut(s) | 130 |
| Eco47I | GGWCC | 2 cut(s) | 200, 484 |
| Eco52I | CGGCCG | 1 cut(s) | 260 |
| Eco57I | CTGAAG | 2 cut(s) | 299, 366 |
| Eco81I | CCTNAGG | 1 cut(s) | 870 |
| EcoNI | CCTNNNNNAGG | 1 cut(s) | 873 |
| EcoRV | GATATC | 1 cut(s) | 130 |
| Esp3I | CGTCTC | 1 cut(s) | 691 |
| FaeI | CATG | 4 cut(s) | 395, 697, 755, 772 |
| FalI | AAGNNNNNCTT | 4 cut(s) | 425, 457, 585, 617 |
| FatI | CATG | 4 cut(s) | 391, 693, 751, 768 |
| Fnu4HI | GCNGC | 6 cut(s) | 33, 189, 192, 195, 263, 292 |
| FokI | GGATG | 3 cut(s) | 325, 430, 518 |
| Fsp4HI | GCNGC | 6 cut(s) | 33, 189, 192, 195, 263, 292 |
| FspBI | CTAG | 3 cut(s) | 452, 524, 543 |
| GlaI | GCGC | 6 cut(s) | 78, 370, 389, 466, 497, 865 |
| GluI | GCNGC | 6 cut(s) | 33, 189, 192, 195, 263, 292 |
| GsuI | CTGGAG | 2 cut(s) | 40, 345 |
| HaeII | RGCGCY | 3 cut(s) | 80, 372, 391 |
| HaeIII | GGCC | 5 cut(s) | 95, 115, 242, 262, 633 |
| HapII | CCGG | 6 cut(s) | 198, 213, 233, 239, 415, 845 |
| HhaI | GCGC | 6 cut(s) | 79, 371, 390, 467, 498, 866 |
| Hin1II | CATG | 4 cut(s) | 395, 697, 755, 772 |
| Hin6I | GCGC | 6 cut(s) | 77, 369, 388, 465, 496, 864 |
| HinP1I | GCGC | 6 cut(s) | 77, 369, 388, 465, 496, 864 |
| HincII | GTYRAC | 2 cut(s) | 321, 410 |
| HindII | GTYRAC | 2 cut(s) | 321, 410 |
| HindIII | AAGCTT | 1 cut(s) | 150 |
| HinfI | GANTC | 5 cut(s) | 68, 109, 144, 256, 848 |
| HpaII | CCGG | 6 cut(s) | 198, 213, 233, 239, 415, 845 |
| HphI | GGTGA | 3 cut(s) | 75, 202, 219 |
| Hpy166II | GTNNAC | 2 cut(s) | 321, 410 |
| Hpy188I | TCNGA | 4 cut(s) | 385, 488, 549, 618 |
| Hpy188III | TCNNGA | 7 cut(s) | 57, 524, 593, 661, 742, 752, 845 |
| Hpy8I | GTNNAC | 2 cut(s) | 321, 410 |
| HpyAV | CCTTC | 2 cut(s) | 20, 799 |
| HpyCH4IV | ACGT | 4 cut(s) | 352, 552, 736, 774 |
| HpyCH4V | TGCA | 4 cut(s) | 194, 298, 307, 338 |
| HpyF10VI | GCNNNNNNNGC | 6 cut(s) | 194, 304, 355, 377, 396, 584 |
| HpyF3I | CTNAG | 2 cut(s) | 834, 870 |
| HpySE526I | ACGT | 4 cut(s) | 352, 552, 736, 774 |
| Hsp92II | CATG | 4 cut(s) | 395, 697, 755, 772 |
| HspAI | GCGC | 6 cut(s) | 77, 369, 388, 465, 496, 864 |
| Kpn2I | TCCGGA | 1 cut(s) | 844 |
| Kzo9I | GATC | 3 cut(s) | 46, 207, 657 |
| LguI | GCTCTTC | 1 cut(s) | 606 |
| LmnI | GCTCC | 1 cut(s) | 215 |
| Lsp1109I | GCAGC | 3 cut(s) | 178, 200, 206 |
| LweI | GCATC | 3 cut(s) | 307, 347, 586 |
| MaeI | CTAG | 3 cut(s) | 452, 524, 543 |
| MaeII | ACGT | 4 cut(s) | 352, 552, 736, 774 |
| MaeIII | GTNAC | 1 cut(s) | 81 |
| MalI | GATC | 3 cut(s) | 48, 209, 659 |
| MboI | GATC | 3 cut(s) | 46, 207, 657 |
| MboII | GAAGA | 2 cut(s) | 56, 593 |
| MflI | RGATCY | 1 cut(s) | 46 |
| MhlI | GDGCHC | 1 cut(s) | 558 |
| MlsI | TGGCCA | 1 cut(s) | 633 |
| MluCI | AATT | 1 cut(s) | 709 |
| MluNI | TGGCCA | 1 cut(s) | 633 |
| MlyI | GAGTC | 1 cut(s) | 857 |
| MnlI | CCTC | 7 cut(s) | 37, 64, 143, 167, 369, 738, 869 |
| Mox20I | TGGCCA | 1 cut(s) | 633 |
| MroI | TCCGGA | 1 cut(s) | 844 |
| MscI | TGGCCA | 1 cut(s) | 633 |
| MseI | TTAA | 1 cut(s) | 507 |
| MslI | CAYNNNNRTG | 1 cut(s) | 800 |
| Msp20I | TGGCCA | 1 cut(s) | 633 |
| MspA1I | CMGCKG | 1 cut(s) | 191 |
| MspCI | CTTAAG | 1 cut(s) | 506 |
| MspI | CCGG | 6 cut(s) | 198, 213, 233, 239, 415, 845 |
| MvnI | CGCG | 1 cut(s) | 864 |
| MwoI | GCNNNNNNNGC | 6 cut(s) | 194, 304, 355, 377, 396, 584 |
| NdeII | GATC | 3 cut(s) | 46, 207, 657 |
| NlaIII | CATG | 4 cut(s) | 395, 697, 755, 772 |
| NlaIV | GGNNCC | 5 cut(s) | 202, 217, 237, 485, 766 |
| NmuCI | GTSAC | 1 cut(s) | 81 |
| NspV | TTCGAA | 1 cut(s) | 147 |
| PagI | TCATGA | 1 cut(s) | 751 |
| PaqCI | CACCTGC | 1 cut(s) | 410 |
| PciSI | GCTCTTC | 1 cut(s) | 606 |
| PfeI | GAWTC | 4 cut(s) | 68, 109, 144, 256 |
| PkrI | GCNGC | 6 cut(s) | 34, 190, 193, 196, 264, 293 |
| PleI | GAGTC | 1 cut(s) | 856 |
| PpsI | GAGTC | 1 cut(s) | 856 |
| PspN4I | GGNNCC | 5 cut(s) | 202, 217, 237, 485, 766 |
| PspPI | GGNCC | 3 cut(s) | 114, 200, 484 |
| PstI | CTGCAG | 1 cut(s) | 196 |
| PstNI | CAGNNNCTG | 2 cut(s) | 191, 402 |
| PsuI | RGATCY | 1 cut(s) | 46 |
| PvuII | CAGCTG | 1 cut(s) | 191 |
| RseI | CAYNNNNRTG | 1 cut(s) | 800 |
| SapI | GCTCTTC | 1 cut(s) | 606 |
| SaqAI | TTAA | 1 cut(s) | 507 |
| SatI | GCNGC | 6 cut(s) | 33, 189, 192, 195, 263, 292 |
| Sau3AI | GATC | 3 cut(s) | 46, 207, 657 |
| Sau96I | GGNCC | 3 cut(s) | 114, 200, 484 |
| SchI | GAGTC | 1 cut(s) | 857 |
| SduI | GDGCHC | 1 cut(s) | 558 |
| SfaNI | GCATC | 3 cut(s) | 307, 347, 586 |
| SfcI | CTRYAG | 1 cut(s) | 192 |
| SfuI | TTCGAA | 1 cut(s) | 147 |
| SinI | GGWCC | 2 cut(s) | 200, 484 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 800 |
| SmlI | CTYRAG | 1 cut(s) | 506 |
| SmoI | CTYRAG | 1 cut(s) | 506 |
| Sse9I | AATT | 1 cut(s) | 709 |
| SsiI | CCGC | 6 cut(s) | 30, 33, 263, 289, 292, 405 |
| SspMI | CTAG | 3 cut(s) | 452, 524, 543 |
| TaiI | ACGT | 4 cut(s) | 355, 555, 739, 777 |
| TaqI | TCGA | 2 cut(s) | 147, 660 |
| TasI | AATT | 1 cut(s) | 709 |
| TauI | GCSGC | 3 cut(s) | 35, 265, 294 |
| TfiI | GAWTC | 4 cut(s) | 68, 109, 144, 256 |
| Tru1I | TTAA | 1 cut(s) | 507 |
| Tru9I | TTAA | 1 cut(s) | 507 |
| TscAI | CASTG | 1 cut(s) | 288 |
| TseFI | GTSAC | 1 cut(s) | 81 |
| TseI | GCWGC | 3 cut(s) | 188, 191, 194 |
| Tsp45I | GTSAC | 1 cut(s) | 81 |
| TspDTI | ATGAA | 2 cut(s) | 740, 785 |
| TspRI | CASTG | 1 cut(s) | 288 |
| Vha464I | CTTAAG | 1 cut(s) | 506 |
| VpaK11BI | GGWCC | 2 cut(s) | 200, 484 |
| XagI | CCTNNNNNAGG | 1 cut(s) | 873 |
| XbaI | TCTAGA | 1 cut(s) | 523 |
| XspI | CTAG | 3 cut(s) | 452, 524, 543 |