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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AanI | TTATAA | 1 cut(s) | 276 |
| AasI | GACNNNNNNGTC | 1 cut(s) | 612 |
| AccB1I | GGYRCC | 1 cut(s) | 452 |
| AccII | CGCG | 1 cut(s) | 552 |
| AccIII | TCCGGA | 1 cut(s) | 532 |
| AciI | CCGC | 3 cut(s) | 74, 244, 702 |
| AclWI | GGATC | 1 cut(s) | 834 |
| AcoI | YGGCCR | 3 cut(s) | 90, 112, 319 |
| AcsI | RAATTY | 1 cut(s) | 212 |
| AcuI | CTGAAG | 1 cut(s) | 82 |
| AcyI | GRCGYC | 1 cut(s) | 453 |
| AfiI | CCNNNNNNNGG | 5 cut(s) | 99, 121, 156, 563, 634 |
| AflIII | ACRYGT | 2 cut(s) | 597, 682 |
| AgsI | TTSAA | 2 cut(s) | 259, 393 |
| AjiI | CACGTC | 2 cut(s) | 20, 43 |
| AluBI | AGCT | 6 cut(s) | 25, 180, 187, 287, 445, 467 |
| AluI | AGCT | 6 cut(s) | 25, 180, 187, 287, 445, 467 |
| Alw21I | GWGCWC | 3 cut(s) | 171, 447, 664 |
| Alw26I | GTCTC | 4 cut(s) | 133, 306, 360, 379 |
| Alw44I | GTGCAC | 1 cut(s) | 660 |
| AlwI | GGATC | 1 cut(s) | 834 |
| AlwNI | CAGNNNCTG | 1 cut(s) | 842 |
| Aor13HI | TCCGGA | 1 cut(s) | 532 |
| AoxI | GGCC | 3 cut(s) | 90, 112, 319 |
| ApaLI | GTGCAC | 1 cut(s) | 660 |
| ApoI | RAATTY | 1 cut(s) | 212 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 288 |
| AspLEI | GCGC | 2 cut(s) | 455, 554 |
| AspS9I | GGNCC | 1 cut(s) | 614 |
| AsuHPI | GGTGA | 1 cut(s) | 730 |
| AsuNHI | GCTAGC | 1 cut(s) | 506 |
| AvaII | GGWCC | 1 cut(s) | 614 |
| BaeGI | GKGCMC | 1 cut(s) | 664 |
| BalI | TGGCCA | 1 cut(s) | 321 |
| BanI | GGYRCC | 1 cut(s) | 452 |
| BanII | GRGCYC | 1 cut(s) | 447 |
| BbsI | GAAGAC | 1 cut(s) | 822 |
| Bbv12I | GWGCWC | 3 cut(s) | 171, 447, 664 |
| BccI | CCATC | 3 cut(s) | 225, 301, 785 |
| BcoDI | GTCTC | 4 cut(s) | 133, 306, 360, 379 |
| BfaI | CTAG | 2 cut(s) | 507, 800 |
| BfmI | CTRYAG | 1 cut(s) | 544 |
| BfoI | RGCGCY | 1 cut(s) | 456 |
| BglII | AGATCT | 1 cut(s) | 802 |
| Bme18I | GGWCC | 1 cut(s) | 614 |
| BmgBI | CACGTC | 2 cut(s) | 20, 43 |
| BmgT120I | GGNCC | 1 cut(s) | 614 |
| BmiI | GGNNCC | 2 cut(s) | 454, 706 |
| BmsI | GCATC | 1 cut(s) | 22 |
| BmtI | GCTAGC | 1 cut(s) | 510 |
| BpiI | GAAGAC | 1 cut(s) | 822 |
| BpmI | CTGGAG | 1 cut(s) | 11 |
| BsaBI | GATNNNNATC | 3 cut(s) | 344, 795, 801 |
| BsaHI | GRCGYC | 1 cut(s) | 453 |
| BsaI | GGTCTC | 1 cut(s) | 133 |
| BsaJI | CCNNGG | 1 cut(s) | 513 |
| BsaWI | WCCGGW | 1 cut(s) | 532 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 9, 39 |
| Bsc4I | CCNNNNNNNGG | 5 cut(s) | 99, 121, 156, 563, 634 |
| Bse118I | RCCGGY | 2 cut(s) | 62, 76 |
| Bse1I | ACTGG | 1 cut(s) | 28 |
| Bse8I | GATNNNNATC | 3 cut(s) | 344, 795, 801 |
| BseAI | TCCGGA | 1 cut(s) | 532 |
| BseDI | CCNNGG | 1 cut(s) | 513 |
| BseGI | GGATG | 1 cut(s) | 13 |
| BseJI | GATNNNNATC | 3 cut(s) | 344, 795, 801 |
| BseLI | CCNNNNNNNGG | 5 cut(s) | 99, 121, 156, 563, 634 |
| BseMII | CTCAG | 1 cut(s) | 294 |
| BseNI | ACTGG | 1 cut(s) | 28 |
| BseSI | GKGCMC | 1 cut(s) | 664 |
| BseX3I | CGGCCG | 1 cut(s) | 90 |
| BsgI | GTGCAG | 1 cut(s) | 363 |
| Bsh1236I | CGCG | 1 cut(s) | 552 |
| Bsh1285I | CGRYCG | 1 cut(s) | 93 |
| BshFI | GGCC | 3 cut(s) | 92, 114, 321 |
| BshNI | GGYRCC | 1 cut(s) | 452 |
| BsiEI | CGRYCG | 1 cut(s) | 93 |
| BsiHKAI | GWGCWC | 3 cut(s) | 171, 447, 664 |
| BsiSI | CCGG | 7 cut(s) | 63, 77, 89, 111, 122, 533, 711 |
| BslFI | GGGAC | 1 cut(s) | 608 |
| BslI | CCNNNNNNNGG | 5 cut(s) | 99, 121, 156, 563, 634 |
| BsmAI | GTCTC | 4 cut(s) | 133, 306, 360, 379 |
| BsmBI | CGTCTC | 1 cut(s) | 379 |
| BsmFI | GGGAC | 1 cut(s) | 608 |
| BsnI | GGCC | 3 cut(s) | 92, 114, 321 |
| Bso31I | GGTCTC | 1 cut(s) | 133 |
| Bsp1286I | GDGCHC | 3 cut(s) | 171, 447, 664 |
| Bsp13I | TCCGGA | 1 cut(s) | 532 |
| Bsp143I | GATC | 5 cut(s) | 345, 784, 796, 802, 826 |
| BspACI | CCGC | 3 cut(s) | 74, 244, 702 |
| BspANI | GGCC | 3 cut(s) | 92, 114, 321 |
| BspCNI | CTCAG | 1 cut(s) | 293 |
| BspEI | TCCGGA | 1 cut(s) | 532 |
| BspFNI | CGCG | 1 cut(s) | 552 |
| BspHI | TCATGA | 1 cut(s) | 439 |
| BspLI | GGNNCC | 2 cut(s) | 454, 706 |
| BspOI | GCTAGC | 1 cut(s) | 510 |
| BspPI | GGATC | 1 cut(s) | 834 |
| BspQI | GCTCTTC | 1 cut(s) | 294 |
| BspT107I | GGYRCC | 1 cut(s) | 452 |
| BspTNI | GGTCTC | 1 cut(s) | 133 |
| BsrFI | RCCGGY | 2 cut(s) | 62, 76 |
| BsrI | ACTGG | 1 cut(s) | 28 |
| BssAI | RCCGGY | 2 cut(s) | 62, 76 |
| BssECI | CCNNGG | 1 cut(s) | 513 |
| BssMI | GATC | 5 cut(s) | 345, 784, 796, 802, 826 |
| BssNI | GRCGYC | 1 cut(s) | 453 |
| Bst4CI | ACNGT | 2 cut(s) | 156, 671 |
| Bst6I | CTCTTC | 2 cut(s) | 294, 683 |
| BstACI | GRCGYC | 1 cut(s) | 453 |
| BstC8I | GCNNGC | 4 cut(s) | 37, 78, 508, 660 |
| BstDEI | CTNAG | 6 cut(s) | 206, 220, 280, 522, 585, 806 |
| BstDSI | CCRYGG | 1 cut(s) | 513 |
| BstF5I | GGATG | 1 cut(s) | 13 |
| BstFNI | CGCG | 1 cut(s) | 552 |
| BstH2I | RGCGCY | 1 cut(s) | 456 |
| BstHHI | GCGC | 2 cut(s) | 455, 554 |
| BstKTI | GATC | 5 cut(s) | 348, 787, 799, 805, 829 |
| BstMAI | GTCTC | 4 cut(s) | 133, 306, 360, 379 |
| BstMBI | GATC | 5 cut(s) | 345, 784, 796, 802, 826 |
| BstMCI | CGRYCG | 1 cut(s) | 93 |
| BstMWI | GCNNNNNNNGC | 3 cut(s) | 10, 45, 761 |
| BstNSI | RCATGY | 1 cut(s) | 601 |
| BstSFI | CTRYAG | 1 cut(s) | 544 |
| BstSLI | GKGCMC | 1 cut(s) | 664 |
| BstUI | CGCG | 1 cut(s) | 552 |
| BstV2I | GAAGAC | 1 cut(s) | 822 |
| BstX2I | RGATCY | 1 cut(s) | 802 |
| BstYI | RGATCY | 1 cut(s) | 802 |
| BstZI | CGGCCG | 1 cut(s) | 90 |
| BsuRI | GGCC | 3 cut(s) | 92, 114, 321 |
| BtgI | CCRYGG | 1 cut(s) | 513 |
| BtgZI | GCGATG | 1 cut(s) | 244 |
| BtrI | CACGTC | 2 cut(s) | 20, 43 |
| BtsCI | GGATG | 1 cut(s) | 13 |
| BtsIMutI | CAGTG | 1 cut(s) | 380 |
| Cac8I | GCNNGC | 4 cut(s) | 37, 78, 508, 660 |
| CaiI | CAGNNNCTG | 1 cut(s) | 842 |
| CciI | TCATGA | 1 cut(s) | 439 |
| CfoI | GCGC | 2 cut(s) | 455, 554 |
| Cfr10I | RCCGGY | 2 cut(s) | 62, 76 |
| Cfr13I | GGNCC | 1 cut(s) | 614 |
| CseI | GACGC | 1 cut(s) | 576 |
| CviAII | CATG | 6 cut(s) | 440, 457, 598, 715, 772, 823 |
| DdeI | CTNAG | 6 cut(s) | 206, 220, 280, 522, 585, 806 |
| DinI | GGCGCC | 1 cut(s) | 454 |
| DpnI | GATC | 5 cut(s) | 347, 786, 798, 804, 828 |
| DpnII | GATC | 5 cut(s) | 345, 784, 796, 802, 826 |
| DrdI | GACNNNNNNGTC | 1 cut(s) | 612 |
| DseDI | GACNNNNNNGTC | 1 cut(s) | 612 |
| EaeI | YGGCCR | 3 cut(s) | 90, 112, 319 |
| EagI | CGGCCG | 1 cut(s) | 90 |
| Eam1104I | CTCTTC | 2 cut(s) | 294, 683 |
| EarI | CTCTTC | 2 cut(s) | 294, 683 |
| EciI | GGCGGA | 1 cut(s) | 717 |
| Ecl136II | GAGCTC | 1 cut(s) | 445 |
| EclXI | CGGCCG | 1 cut(s) | 90 |
| Eco24I | GRGCYC | 1 cut(s) | 447 |
| Eco31I | GGTCTC | 1 cut(s) | 133 |
| Eco47I | GGWCC | 1 cut(s) | 614 |
| Eco52I | CGGCCG | 1 cut(s) | 90 |
| Eco53kI | GAGCTC | 1 cut(s) | 445 |
| Eco57I | CTGAAG | 1 cut(s) | 82 |
| EcoICRI | GAGCTC | 1 cut(s) | 445 |
| EcoT38I | GRGCYC | 1 cut(s) | 447 |
| EgeI | GGCGCC | 1 cut(s) | 454 |
| EheI | GGCGCC | 1 cut(s) | 454 |
| Esp3I | CGTCTC | 1 cut(s) | 379 |
| FaeI | CATG | 6 cut(s) | 443, 460, 601, 718, 775, 826 |
| FaqI | GGGAC | 1 cut(s) | 608 |
| FatI | CATG | 6 cut(s) | 439, 456, 597, 714, 771, 822 |
| FauNDI | CATATG | 1 cut(s) | 619 |
| FriOI | GRGCYC | 1 cut(s) | 447 |
| FspBI | CTAG | 2 cut(s) | 507, 800 |
| GlaI | GCGC | 2 cut(s) | 454, 553 |
| GsuI | CTGGAG | 1 cut(s) | 11 |
| HaeII | RGCGCY | 1 cut(s) | 456 |
| HaeIII | GGCC | 3 cut(s) | 92, 114, 321 |
| HapII | CCGG | 7 cut(s) | 63, 77, 89, 111, 122, 533, 711 |
| HgaI | GACGC | 1 cut(s) | 576 |
| HhaI | GCGC | 2 cut(s) | 455, 554 |
| Hin1I | GRCGYC | 1 cut(s) | 453 |
| Hin1II | CATG | 6 cut(s) | 443, 460, 601, 718, 775, 826 |
| Hin6I | GCGC | 2 cut(s) | 453, 552 |
| HinP1I | GCGC | 2 cut(s) | 453, 552 |
| HincII | GTYRAC | 3 cut(s) | 58, 68, 680 |
| HindII | GTYRAC | 3 cut(s) | 58, 68, 680 |
| HindIII | AAGCTT | 1 cut(s) | 178 |
| HinfI | GANTC | 2 cut(s) | 194, 536 |
| HpaII | CCGG | 7 cut(s) | 63, 77, 89, 111, 122, 533, 711 |
| HphI | GGTGA | 1 cut(s) | 730 |
| Hpy166II | GTNNAC | 4 cut(s) | 58, 68, 662, 680 |
| Hpy188I | TCNGA | 3 cut(s) | 283, 306, 405 |
| Hpy188III | TCNNGA | 9 cut(s) | 100, 349, 440, 533, 603, 749, 788, 800, 830 |
| Hpy8I | GTNNAC | 4 cut(s) | 58, 68, 662, 680 |
| HpyAV | CCTTC | 2 cut(s) | 376, 632 |
| HpyCH4III | ACNGT | 2 cut(s) | 156, 671 |
| HpyCH4IV | ACGT | 6 cut(s) | 19, 42, 424, 462, 682, 743 |
| HpyCH4V | TGCA | 4 cut(s) | 380, 419, 662, 728 |
| HpyF10VI | GCNNNNNNNGC | 3 cut(s) | 10, 45, 761 |
| HpyF3I | CTNAG | 6 cut(s) | 206, 220, 280, 522, 585, 806 |
| HpySE526I | ACGT | 6 cut(s) | 19, 42, 424, 462, 682, 743 |
| Hsp92I | GRCGYC | 1 cut(s) | 453 |
| Hsp92II | CATG | 6 cut(s) | 443, 460, 601, 718, 775, 826 |
| HspAI | GCGC | 2 cut(s) | 453, 552 |
| KasI | GGCGCC | 1 cut(s) | 452 |
| Kpn2I | TCCGGA | 1 cut(s) | 532 |
| KroI | GCCGGC | 1 cut(s) | 76 |
| KroNI | GCCGGC | 1 cut(s) | 78 |
| Kzo9I | GATC | 5 cut(s) | 345, 784, 796, 802, 826 |
| LguI | GCTCTTC | 1 cut(s) | 294 |
| LmnI | GCTCC | 4 cut(s) | 30, 184, 574, 704 |
| LweI | GCATC | 1 cut(s) | 22 |
| MaeI | CTAG | 2 cut(s) | 507, 800 |
| MaeII | ACGT | 6 cut(s) | 19, 42, 424, 462, 682, 743 |
| MalI | GATC | 5 cut(s) | 347, 786, 798, 804, 828 |
| MboI | GATC | 5 cut(s) | 345, 784, 796, 802, 826 |
| MboII | GAAGA | 5 cut(s) | 281, 505, 700, 794, 827 |
| MflI | RGATCY | 1 cut(s) | 802 |
| MhlI | GDGCHC | 3 cut(s) | 171, 447, 664 |
| MlsI | TGGCCA | 1 cut(s) | 321 |
| MluCI | AATT | 3 cut(s) | 212, 397, 766 |
| MluNI | TGGCCA | 1 cut(s) | 321 |
| Mly113I | GGCGCC | 1 cut(s) | 453 |
| MlyI | GAGTC | 2 cut(s) | 203, 545 |
| MnlI | CCTC | 8 cut(s) | 208, 251, 557, 628, 648, 668, 692, 718 |
| Mox20I | TGGCCA | 1 cut(s) | 321 |
| MroI | TCCGGA | 1 cut(s) | 532 |
| MroNI | GCCGGC | 1 cut(s) | 76 |
| MroXI | GAANNNNTTC | 1 cut(s) | 288 |
| MscI | TGGCCA | 1 cut(s) | 321 |
| MseI | TTAA | 2 cut(s) | 216, 856 |
| Msp20I | TGGCCA | 1 cut(s) | 321 |
| MspI | CCGG | 7 cut(s) | 63, 77, 89, 111, 122, 533, 711 |
| MvnI | CGCG | 1 cut(s) | 552 |
| MwoI | GCNNNNNNNGC | 3 cut(s) | 10, 45, 761 |
| NaeI | GCCGGC | 1 cut(s) | 78 |
| NarI | GGCGCC | 1 cut(s) | 453 |
| NdeI | CATATG | 1 cut(s) | 619 |
| NdeII | GATC | 5 cut(s) | 345, 784, 796, 802, 826 |
| NgoMIV | GCCGGC | 1 cut(s) | 76 |
| NheI | GCTAGC | 1 cut(s) | 506 |
| NlaIII | CATG | 6 cut(s) | 443, 460, 601, 718, 775, 826 |
| NlaIV | GGNNCC | 2 cut(s) | 454, 706 |
| NspI | RCATGY | 1 cut(s) | 601 |
| PagI | TCATGA | 1 cut(s) | 439 |
| PciI | ACATGT | 1 cut(s) | 597 |
| PciSI | GCTCTTC | 1 cut(s) | 294 |
| PcsI | WCGNNNNNNNCGW | 1 cut(s) | 574 |
| PdiI | GCCGGC | 1 cut(s) | 78 |
| PdmI | GAANNNNTTC | 1 cut(s) | 288 |
| PleI | GAGTC | 2 cut(s) | 202, 544 |
| PluTI | GGCGCC | 1 cut(s) | 456 |
| PpsI | GAGTC | 2 cut(s) | 202, 544 |
| PscI | ACATGT | 1 cut(s) | 597 |
| PsiI | TTATAA | 1 cut(s) | 276 |
| Psp124BI | GAGCTC | 1 cut(s) | 447 |
| PspN4I | GGNNCC | 2 cut(s) | 454, 706 |
| PspPI | GGNCC | 1 cut(s) | 614 |
| PstNI | CAGNNNCTG | 1 cut(s) | 842 |
| PsuI | RGATCY | 1 cut(s) | 802 |
| SacI | GAGCTC | 1 cut(s) | 447 |
| SapI | GCTCTTC | 1 cut(s) | 294 |
| SaqAI | TTAA | 2 cut(s) | 216, 856 |
| Sau3AI | GATC | 5 cut(s) | 345, 784, 796, 802, 826 |
| Sau96I | GGNCC | 1 cut(s) | 614 |
| SchI | GAGTC | 2 cut(s) | 203, 545 |
| SduI | GDGCHC | 3 cut(s) | 171, 447, 664 |
| SfaNI | GCATC | 1 cut(s) | 22 |
| SfcI | CTRYAG | 1 cut(s) | 544 |
| SfoI | GGCGCC | 1 cut(s) | 454 |
| SinI | GGWCC | 1 cut(s) | 614 |
| Sse9I | AATT | 3 cut(s) | 212, 397, 766 |
| SsiI | CCGC | 3 cut(s) | 74, 244, 702 |
| SspDI | GGCGCC | 1 cut(s) | 452 |
| SspI | AATATT | 1 cut(s) | 484 |
| SspMI | CTAG | 2 cut(s) | 507, 800 |
| SstI | GAGCTC | 1 cut(s) | 447 |
| TaaI | ACNGT | 2 cut(s) | 156, 671 |
| TaiI | ACGT | 6 cut(s) | 22, 45, 427, 465, 685, 746 |
| TaqI | TCGA | 1 cut(s) | 348 |
| TasI | AATT | 3 cut(s) | 212, 397, 766 |
| Tru1I | TTAA | 2 cut(s) | 216, 856 |
| Tru9I | TTAA | 2 cut(s) | 216, 856 |
| TscAI | CASTG | 1 cut(s) | 387 |
| TspDTI | ATGAA | 2 cut(s) | 428, 473 |
| TspRI | CASTG | 1 cut(s) | 387 |
| VneI | GTGCAC | 1 cut(s) | 660 |
| VpaK11BI | GGWCC | 1 cut(s) | 614 |
| XapI | RAATTY | 1 cut(s) | 212 |
| XbaI | TCTAGA | 1 cut(s) | 799 |
| XceI | RCATGY | 1 cut(s) | 601 |
| XmnI | GAANNNNTTC | 1 cut(s) | 288 |
| XspI | CTAG | 2 cut(s) | 507, 800 |