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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AanI | TTATAA | 2 cut(s) | 555, 600 |
| Acc65I | GGTACC | 1 cut(s) | 630 |
| AccB1I | GGYRCC | 4 cut(s) | 91, 630, 776, 797 |
| AccBSI | CCGCTC | 1 cut(s) | 628 |
| AciI | CCGC | 3 cut(s) | 628, 676, 821 |
| AclWI | GGATC | 3 cut(s) | 79, 111, 886 |
| AcuI | CTGAAG | 2 cut(s) | 483, 1053 |
| AcvI | CACGTG | 1 cut(s) | 719 |
| AdeI | CACNNNGTG | 1 cut(s) | 722 |
| AfaI | GTAC | 3 cut(s) | 460, 632, 971 |
| AfeI | AGCGCT | 2 cut(s) | 228, 239 |
| AfiI | CCNNNNNNNGG | 7 cut(s) | 34, 363, 614, 615, 685, 738, 811 |
| AflII | CTTAAG | 1 cut(s) | 635 |
| AflIII | ACRYGT | 2 cut(s) | 716, 734 |
| AgsI | TTSAA | 6 cut(s) | 66, 284, 313, 561, 898, 1027 |
| AhdI | GACNNNNNGTC | 1 cut(s) | 380 |
| AjnI | CCWGG | 2 cut(s) | 87, 684 |
| AjuI | GAANNNNNNNTTGG | 2 cut(s) | 225, 257 |
| AloI | GAACNNNNNNTCC | 2 cut(s) | 95, 127 |
| AluBI | AGCT | 8 cut(s) | 217, 397, 499, 521, 765, 889, 926, 1031 |
| AluI | AGCT | 8 cut(s) | 217, 397, 499, 521, 765, 889, 926, 1031 |
| Alw21I | GWGCWC | 2 cut(s) | 832, 1047 |
| Alw44I | GTGCAC | 2 cut(s) | 828, 1043 |
| AlwI | GGATC | 3 cut(s) | 79, 111, 886 |
| Aor51HI | AGCGCT | 2 cut(s) | 228, 239 |
| AoxI | GGCC | 2 cut(s) | 563, 664 |
| ApaI | GGGCCC | 1 cut(s) | 668 |
| ApaLI | GTGCAC | 2 cut(s) | 828, 1043 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 342 |
| Asp718I | GGTACC | 1 cut(s) | 630 |
| AspLEI | GCGC | 3 cut(s) | 229, 240, 621 |
| AspS9I | GGNCC | 4 cut(s) | 564, 664, 665, 949 |
| AsuC2I | CCSGG | 1 cut(s) | 101 |
| AsuHPI | GGTGA | 1 cut(s) | 1003 |
| AvaII | GGWCC | 1 cut(s) | 949 |
| AxyI | CCTNAGG | 1 cut(s) | 953 |
| BaeGI | GKGCMC | 3 cut(s) | 668, 832, 1047 |
| BanI | GGYRCC | 4 cut(s) | 91, 630, 776, 797 |
| BanII | GRGCYC | 1 cut(s) | 668 |
| BauI | CACGAG | 2 cut(s) | 484, 542 |
| BbrPI | CACGTG | 1 cut(s) | 719 |
| Bbv12I | GWGCWC | 2 cut(s) | 832, 1047 |
| BccI | CCATC | 3 cut(s) | 63, 271, 986 |
| BciT130I | CCWGG | 2 cut(s) | 89, 686 |
| BciVI | GTATCC | 2 cut(s) | 706, 767 |
| BcnI | CCSGG | 1 cut(s) | 101 |
| BfaI | CTAG | 3 cut(s) | 230, 762, 923 |
| BfoI | RGCGCY | 2 cut(s) | 230, 241 |
| BfrI | CTTAAG | 1 cut(s) | 635 |
| BfuI | GTATCC | 2 cut(s) | 706, 767 |
| Bme1390I | CCNGG | 3 cut(s) | 89, 101, 686 |
| Bme18I | GGWCC | 1 cut(s) | 949 |
| BmeRI | GACNNNNNGTC | 1 cut(s) | 380 |
| BmgT120I | GGNCC | 4 cut(s) | 564, 664, 665, 949 |
| BmiI | GGNNCC | 7 cut(s) | 93, 632, 666, 778, 799, 950, 960 |
| BmrFI | CCNGG | 3 cut(s) | 89, 101, 686 |
| BmsI | GCATC | 2 cut(s) | 144, 1042 |
| BpuEI | CTTGAG | 1 cut(s) | 123 |
| BpuMI | CCSGG | 1 cut(s) | 101 |
| Bsa29I | ATCGAT | 1 cut(s) | 871 |
| BsaAI | YACGTR | 1 cut(s) | 719 |
| BsaBI | GATNNNNATC | 2 cut(s) | 877, 1005 |
| BsaJI | CCNNGG | 1 cut(s) | 780 |
| BsaXI | ACNNNNNCTCC | 4 cut(s) | 733, 763, 790, 820 |
| Bsc4I | CCNNNNNNNGG | 7 cut(s) | 34, 363, 614, 615, 685, 738, 811 |
| Bse21I | CCTNAGG | 1 cut(s) | 953 |
| Bse3DI | GCAATG | 1 cut(s) | 253 |
| Bse8I | GATNNNNATC | 2 cut(s) | 877, 1005 |
| BseBI | CCWGG | 2 cut(s) | 89, 686 |
| BseCI | ATCGAT | 1 cut(s) | 871 |
| BseDI | CCNNGG | 1 cut(s) | 780 |
| BseGI | GGATG | 1 cut(s) | 1057 |
| BseJI | GATNNNNATC | 2 cut(s) | 877, 1005 |
| BseLI | CCNNNNNNNGG | 7 cut(s) | 34, 363, 614, 615, 685, 738, 811 |
| BseMI | GCAATG | 1 cut(s) | 253 |
| BseMII | CTCAG | 3 cut(s) | 193, 513, 944 |
| BseRI | GAGGAG | 1 cut(s) | 254 |
| BseSI | GKGCMC | 3 cut(s) | 668, 832, 1047 |
| BshFI | GGCC | 2 cut(s) | 565, 666 |
| BshNI | GGYRCC | 4 cut(s) | 91, 630, 776, 797 |
| BshVI | ATCGAT | 1 cut(s) | 871 |
| BsiHKAI | GWGCWC | 2 cut(s) | 832, 1047 |
| BsiSI | CCGG | 1 cut(s) | 101 |
| BslFI | GGGAC | 3 cut(s) | 660, 669, 962 |
| BslI | CCNNNNNNNGG | 7 cut(s) | 34, 363, 614, 615, 685, 738, 811 |
| BsmFI | GGGAC | 3 cut(s) | 660, 669, 962 |
| BsmI | GAATGC | 1 cut(s) | 821 |
| BsnI | GGCC | 2 cut(s) | 565, 666 |
| Bsp120I | GGGCCC | 1 cut(s) | 664 |
| Bsp1286I | GDGCHC | 3 cut(s) | 668, 832, 1047 |
| Bsp143I | GATC | 5 cut(s) | 84, 103, 198, 480, 878 |
| Bsp19I | CCATGG | 1 cut(s) | 780 |
| BspACI | CCGC | 3 cut(s) | 628, 676, 821 |
| BspANI | GGCC | 2 cut(s) | 565, 666 |
| BspCNI | CTCAG | 3 cut(s) | 192, 514, 945 |
| BspDI | ATCGAT | 1 cut(s) | 871 |
| BspHI | TCATGA | 1 cut(s) | 586 |
| BspLI | GGNNCC | 7 cut(s) | 93, 632, 666, 778, 799, 950, 960 |
| BspPI | GGATC | 3 cut(s) | 79, 111, 886 |
| BspQI | GCTCTTC | 1 cut(s) | 228 |
| BspT107I | GGYRCC | 4 cut(s) | 91, 630, 776, 797 |
| BspTI | CTTAAG | 1 cut(s) | 635 |
| BsrBI | CCGCTC | 1 cut(s) | 628 |
| BsrDI | GCAATG | 1 cut(s) | 253 |
| BssECI | CCNNGG | 1 cut(s) | 780 |
| BssMI | GATC | 5 cut(s) | 84, 103, 198, 480, 878 |
| BssSI | CACGAG | 2 cut(s) | 484, 542 |
| BssT1I | CCWWGG | 1 cut(s) | 780 |
| Bst2BI | CACGAG | 2 cut(s) | 484, 542 |
| Bst2UI | CCWGG | 2 cut(s) | 89, 686 |
| Bst4CI | ACNGT | 3 cut(s) | 32, 354, 458 |
| Bst6I | CTCTTC | 2 cut(s) | 228, 348 |
| BstAFI | CTTAAG | 1 cut(s) | 635 |
| BstBAI | YACGTR | 1 cut(s) | 719 |
| BstC8I | GCNNGC | 4 cut(s) | 135, 821, 913, 917 |
| BstDEI | CTNAG | 4 cut(s) | 179, 522, 576, 953 |
| BstDSI | CCRYGG | 1 cut(s) | 780 |
| BstEII | GGTNACC | 1 cut(s) | 37 |
| BstF5I | GGATG | 1 cut(s) | 1057 |
| BstH2I | RGCGCY | 2 cut(s) | 230, 241 |
| BstHHI | GCGC | 3 cut(s) | 229, 240, 621 |
| BstKTI | GATC | 5 cut(s) | 87, 106, 201, 483, 881 |
| BstMBI | GATC | 5 cut(s) | 84, 103, 198, 480, 878 |
| BstMWI | GCNNNNNNNGC | 3 cut(s) | 235, 625, 912 |
| BstNI | CCWGG | 2 cut(s) | 89, 686 |
| BstNSI | RCATGY | 2 cut(s) | 137, 738 |
| BstPI | GGTNACC | 1 cut(s) | 37 |
| BstSCI | CCNGG | 3 cut(s) | 87, 99, 684 |
| BstSLI | GKGCMC | 3 cut(s) | 668, 832, 1047 |
| BstX2I | RGATCY | 1 cut(s) | 103 |
| BstYI | RGATCY | 1 cut(s) | 103 |
| Bsu15I | ATCGAT | 1 cut(s) | 871 |
| Bsu36I | CCTNAGG | 1 cut(s) | 953 |
| BsuI | GTATCC | 2 cut(s) | 706, 767 |
| BsuRI | GGCC | 2 cut(s) | 565, 666 |
| BsuTUI | ATCGAT | 1 cut(s) | 871 |
| BtgI | CCRYGG | 1 cut(s) | 780 |
| BtsCI | GGATG | 1 cut(s) | 1057 |
| Cac8I | GCNNGC | 4 cut(s) | 135, 821, 913, 917 |
| CciI | TCATGA | 1 cut(s) | 586 |
| CfoI | GCGC | 3 cut(s) | 229, 240, 621 |
| Cfr13I | GGNCC | 4 cut(s) | 564, 664, 665, 949 |
| ClaI | ATCGAT | 1 cut(s) | 871 |
| Csp6I | GTAC | 3 cut(s) | 459, 631, 970 |
| CviAII | CATG | 8 cut(s) | 82, 134, 530, 587, 650, 735, 781, 1048 |
| CviQI | GTAC | 3 cut(s) | 459, 631, 970 |
| DdeI | CTNAG | 4 cut(s) | 179, 522, 576, 953 |
| DpnI | GATC | 5 cut(s) | 86, 105, 200, 482, 880 |
| DpnII | GATC | 5 cut(s) | 84, 103, 198, 480, 878 |
| DraIII | CACNNNGTG | 1 cut(s) | 722 |
| DriI | GACNNNNNGTC | 1 cut(s) | 380 |
| Eam1104I | CTCTTC | 2 cut(s) | 228, 348 |
| Eam1105I | GACNNNNNGTC | 1 cut(s) | 380 |
| EarI | CTCTTC | 2 cut(s) | 228, 348 |
| Eco130I | CCWWGG | 1 cut(s) | 780 |
| Eco24I | GRGCYC | 1 cut(s) | 668 |
| Eco47I | GGWCC | 1 cut(s) | 949 |
| Eco47III | AGCGCT | 2 cut(s) | 228, 239 |
| Eco57I | CTGAAG | 2 cut(s) | 483, 1053 |
| Eco72I | CACGTG | 1 cut(s) | 719 |
| Eco81I | CCTNAGG | 1 cut(s) | 953 |
| Eco91I | GGTNACC | 1 cut(s) | 37 |
| EcoO109I | RGGNCCY | 1 cut(s) | 949 |
| EcoO65I | GGTNACC | 1 cut(s) | 37 |
| EcoRII | CCWGG | 2 cut(s) | 87, 684 |
| EcoT14I | CCWWGG | 1 cut(s) | 780 |
| EcoT38I | GRGCYC | 1 cut(s) | 668 |
| ErhI | CCWWGG | 1 cut(s) | 780 |
| FaeI | CATG | 8 cut(s) | 85, 137, 533, 590, 653, 738, 784, 1051 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 957, 989 |
| FaqI | GGGAC | 3 cut(s) | 660, 669, 962 |
| FatI | CATG | 8 cut(s) | 81, 133, 529, 586, 649, 734, 780, 1047 |
| FauI | CCCGC | 1 cut(s) | 828 |
| FauNDI | CATATG | 1 cut(s) | 165 |
| FokI | GGATG | 1 cut(s) | 1064 |
| FriOI | GRGCYC | 1 cut(s) | 668 |
| FspBI | CTAG | 3 cut(s) | 230, 762, 923 |
| GlaI | GCGC | 3 cut(s) | 228, 239, 620 |
| HaeII | RGCGCY | 2 cut(s) | 230, 241 |
| HaeIII | GGCC | 2 cut(s) | 565, 666 |
| HapII | CCGG | 1 cut(s) | 101 |
| HhaI | GCGC | 3 cut(s) | 229, 240, 621 |
| Hin1II | CATG | 8 cut(s) | 85, 137, 533, 590, 653, 738, 784, 1051 |
| Hin6I | GCGC | 3 cut(s) | 227, 238, 619 |
| HinP1I | GCGC | 3 cut(s) | 227, 238, 619 |
| HinfI | GANTC | 2 cut(s) | 8, 257 |
| HpaII | CCGG | 1 cut(s) | 101 |
| HphI | GGTGA | 1 cut(s) | 1003 |
| Hpy166II | GTNNAC | 4 cut(s) | 374, 830, 970, 1045 |
| Hpy188I | TCNGA | 3 cut(s) | 22, 182, 337 |
| Hpy188III | TCNNGA | 6 cut(s) | 115, 151, 484, 544, 587, 898 |
| Hpy8I | GTNNAC | 4 cut(s) | 374, 830, 970, 1045 |
| HpyAV | CCTTC | 2 cut(s) | 430, 683 |
| HpyCH4III | ACNGT | 3 cut(s) | 32, 354, 458 |
| HpyCH4IV | ACGT | 3 cut(s) | 658, 718, 826 |
| HpyCH4V | TGCA | 6 cut(s) | 209, 830, 906, 977, 1045, 1055 |
| HpyF10VI | GCNNNNNNNGC | 3 cut(s) | 235, 625, 912 |
| HpyF3I | CTNAG | 4 cut(s) | 179, 522, 576, 953 |
| HpySE526I | ACGT | 3 cut(s) | 658, 718, 826 |
| Hsp92II | CATG | 8 cut(s) | 85, 137, 533, 590, 653, 738, 784, 1051 |
| HspAI | GCGC | 3 cut(s) | 227, 238, 619 |
| KpnI | GGTACC | 1 cut(s) | 634 |
| Kzo9I | GATC | 5 cut(s) | 84, 103, 198, 480, 878 |
| LguI | GCTCTTC | 1 cut(s) | 228 |
| LmnI | GCTCC | 2 cut(s) | 625, 958 |
| LweI | GCATC | 2 cut(s) | 144, 1042 |
| MaeI | CTAG | 3 cut(s) | 230, 762, 923 |
| MaeII | ACGT | 3 cut(s) | 658, 718, 826 |
| MaeIII | GTNAC | 2 cut(s) | 37, 382 |
| MalI | GATC | 5 cut(s) | 86, 105, 200, 482, 880 |
| MbiI | CCGCTC | 1 cut(s) | 628 |
| MboI | GATC | 5 cut(s) | 84, 103, 198, 480, 878 |
| MboII | GAAGA | 7 cut(s) | 245, 335, 992, 995, 998, 1001, 1046 |
| MflI | RGATCY | 1 cut(s) | 103 |
| MhlI | GDGCHC | 3 cut(s) | 668, 832, 1047 |
| MluCI | AATT | 6 cut(s) | 331, 399, 550, 556, 595, 836 |
| MlyI | GAGTC | 1 cut(s) | 2 |
| MroXI | GAANNNNTTC | 1 cut(s) | 342 |
| MseI | TTAA | 2 cut(s) | 636, 839 |
| MslI | CAYNNNNRTG | 4 cut(s) | 542, 858, 873, 1050 |
| MspCI | CTTAAG | 1 cut(s) | 635 |
| MspI | CCGG | 1 cut(s) | 101 |
| MspR9I | CCNGG | 3 cut(s) | 89, 101, 686 |
| Mva1269I | GAATGC | 1 cut(s) | 821 |
| MvaI | CCWGG | 2 cut(s) | 89, 686 |
| MwoI | GCNNNNNNNGC | 3 cut(s) | 235, 625, 912 |
| NciI | CCSGG | 1 cut(s) | 101 |
| NcoI | CCATGG | 1 cut(s) | 780 |
| NdeI | CATATG | 1 cut(s) | 165 |
| NdeII | GATC | 5 cut(s) | 84, 103, 198, 480, 878 |
| NlaIII | CATG | 8 cut(s) | 85, 137, 533, 590, 653, 738, 784, 1051 |
| NlaIV | GGNNCC | 7 cut(s) | 93, 632, 666, 778, 799, 950, 960 |
| NmuCI | GTSAC | 1 cut(s) | 382 |
| NspI | RCATGY | 2 cut(s) | 137, 738 |
| PaeI | GCATGC | 1 cut(s) | 137 |
| PagI | TCATGA | 1 cut(s) | 586 |
| PciI | ACATGT | 1 cut(s) | 734 |
| PciSI | GCTCTTC | 1 cut(s) | 228 |
| PctI | GAATGC | 1 cut(s) | 821 |
| PdmI | GAANNNNTTC | 1 cut(s) | 342 |
| PfeI | GAWTC | 1 cut(s) | 257 |
| PleI | GAGTC | 1 cut(s) | 2 |
| PmaCI | CACGTG | 1 cut(s) | 719 |
| PmlI | CACGTG | 1 cut(s) | 719 |
| PpsI | GAGTC | 1 cut(s) | 2 |
| Ppu21I | YACGTR | 1 cut(s) | 719 |
| PpuMI | RGGWCCY | 1 cut(s) | 949 |
| PscI | ACATGT | 1 cut(s) | 734 |
| PsiI | TTATAA | 2 cut(s) | 555, 600 |
| Psp5II | RGGWCCY | 1 cut(s) | 949 |
| Psp6I | CCWGG | 2 cut(s) | 87, 684 |
| PspCI | CACGTG | 1 cut(s) | 719 |
| PspEI | GGTNACC | 1 cut(s) | 37 |
| PspGI | CCWGG | 2 cut(s) | 87, 684 |
| PspN4I | GGNNCC | 7 cut(s) | 93, 632, 666, 778, 799, 950, 960 |
| PspOMI | GGGCCC | 1 cut(s) | 664 |
| PspPI | GGNCC | 4 cut(s) | 564, 664, 665, 949 |
| PspPPI | RGGWCCY | 1 cut(s) | 949 |
| PsuI | RGATCY | 1 cut(s) | 103 |
| RsaI | GTAC | 3 cut(s) | 460, 632, 971 |
| RsaNI | GTAC | 3 cut(s) | 459, 631, 970 |
| RseI | CAYNNNNRTG | 4 cut(s) | 542, 858, 873, 1050 |
| SapI | GCTCTTC | 1 cut(s) | 228 |
| SaqAI | TTAA | 2 cut(s) | 636, 839 |
| Sau3AI | GATC | 5 cut(s) | 84, 103, 198, 480, 878 |
| Sau96I | GGNCC | 4 cut(s) | 564, 664, 665, 949 |
| SchI | GAGTC | 1 cut(s) | 2 |
| ScrFI | CCNGG | 3 cut(s) | 89, 101, 686 |
| SduI | GDGCHC | 3 cut(s) | 668, 832, 1047 |
| SfaNI | GCATC | 2 cut(s) | 144, 1042 |
| SinI | GGWCC | 1 cut(s) | 949 |
| SmiMI | CAYNNNNRTG | 4 cut(s) | 542, 858, 873, 1050 |
| SmlI | CTYRAG | 2 cut(s) | 138, 635 |
| SmoI | CTYRAG | 2 cut(s) | 138, 635 |
| SphI | GCATGC | 1 cut(s) | 137 |
| Sse9I | AATT | 6 cut(s) | 331, 399, 550, 556, 595, 836 |
| SsiI | CCGC | 3 cut(s) | 628, 676, 821 |
| SspI | AATATT | 1 cut(s) | 75 |
| SspMI | CTAG | 3 cut(s) | 230, 762, 923 |
| StyD4I | CCNGG | 3 cut(s) | 87, 99, 684 |
| StyI | CCWWGG | 1 cut(s) | 780 |
| TaaI | ACNGT | 3 cut(s) | 32, 354, 458 |
| TaiI | ACGT | 3 cut(s) | 661, 721, 829 |
| TaqI | TCGA | 3 cut(s) | 197, 871, 885 |
| TasI | AATT | 6 cut(s) | 331, 399, 550, 556, 595, 836 |
| TfiI | GAWTC | 1 cut(s) | 257 |
| Tru1I | TTAA | 2 cut(s) | 636, 839 |
| Tru9I | TTAA | 2 cut(s) | 636, 839 |
| TseFI | GTSAC | 1 cut(s) | 382 |
| Tsp45I | GTSAC | 1 cut(s) | 382 |
| TspDTI | ATGAA | 4 cut(s) | 482, 531, 575, 1053 |
| TspGWI | ACGGA | 1 cut(s) | 346 |
| Vha464I | CTTAAG | 1 cut(s) | 635 |
| VneI | GTGCAC | 2 cut(s) | 828, 1043 |
| VpaK11BI | GGWCC | 1 cut(s) | 949 |
| XceI | RCATGY | 2 cut(s) | 137, 738 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 808 |
| XmnI | GAANNNNTTC | 1 cut(s) | 342 |
| XspI | CTAG | 3 cut(s) | 230, 762, 923 |