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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AciI | CCGC | 1 cut(s) | 805 |
| AclWI | GGATC | 1 cut(s) | 637 |
| AcoI | YGGCCR | 1 cut(s) | 307 |
| AcsI | RAATTY | 7 cut(s) | 126, 147, 200, 313, 378, 431, 544 |
| AfiI | CCNNNNNNNGG | 3 cut(s) | 23, 24, 626 |
| AgsI | TTSAA | 8 cut(s) | 42, 125, 132, 220, 319, 451, 550, 800 |
| AhlI | ACTAGT | 1 cut(s) | 103 |
| AjiI | CACGTC | 2 cut(s) | 229, 460 |
| AluBI | AGCT | 1 cut(s) | 14 |
| AluI | AGCT | 1 cut(s) | 14 |
| Alw21I | GWGCWC | 1 cut(s) | 745 |
| Alw26I | GTCTC | 4 cut(s) | 219, 286, 450, 517 |
| AlwI | GGATC | 1 cut(s) | 637 |
| Ama87I | CYCGRG | 2 cut(s) | 212, 443 |
| AoxI | GGCC | 6 cut(s) | 141, 168, 307, 372, 399, 616 |
| ApeKI | GCWGC | 1 cut(s) | 352 |
| ApoI | RAATTY | 7 cut(s) | 126, 147, 200, 313, 378, 431, 544 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 37 |
| AspLEI | GCGC | 1 cut(s) | 769 |
| AspS9I | GGNCC | 2 cut(s) | 117, 617 |
| AsuC2I | CCSGG | 1 cut(s) | 25 |
| AsuHPI | GGTGA | 4 cut(s) | 482, 505, 679, 707 |
| AsuII | TTCGAA | 3 cut(s) | 70, 574, 773 |
| AvaI | CYCGRG | 2 cut(s) | 212, 443 |
| AvaII | GGWCC | 1 cut(s) | 117 |
| BaeGI | GKGCMC | 1 cut(s) | 340 |
| BbsI | GAAGAC | 2 cut(s) | 199, 601 |
| Bbv12I | GWGCWC | 1 cut(s) | 745 |
| BbvI | GCAGC | 1 cut(s) | 339 |
| BccI | CCATC | 1 cut(s) | 107 |
| BclI | TGATCA | 1 cut(s) | 712 |
| BcnI | CCSGG | 1 cut(s) | 25 |
| BcoDI | GTCTC | 4 cut(s) | 219, 286, 450, 517 |
| BcuI | ACTAGT | 1 cut(s) | 103 |
| BfaI | CTAG | 2 cut(s) | 104, 137 |
| BfmI | CTRYAG | 1 cut(s) | 368 |
| BisI | GCNGC | 1 cut(s) | 353 |
| BlsI | GCNGC | 1 cut(s) | 354 |
| Bme1390I | CCNGG | 1 cut(s) | 25 |
| Bme18I | GGWCC | 1 cut(s) | 117 |
| BmeT110I | CYCGRG | 2 cut(s) | 212, 443 |
| BmgBI | CACGTC | 2 cut(s) | 229, 460 |
| BmgT120I | GGNCC | 2 cut(s) | 117, 617 |
| BmiI | GGNNCC | 2 cut(s) | 29, 118 |
| BmrFI | CCNGG | 1 cut(s) | 25 |
| BmrI | ACTGGG | 2 cut(s) | 268, 499 |
| BmsI | GCATC | 1 cut(s) | 14 |
| BmuI | ACTGGG | 2 cut(s) | 268, 499 |
| BpiI | GAAGAC | 2 cut(s) | 199, 601 |
| Bpu14I | TTCGAA | 3 cut(s) | 70, 574, 773 |
| BpuEI | CTTGAG | 3 cut(s) | 140, 371, 701 |
| BpuMI | CCSGG | 1 cut(s) | 25 |
| Bsa29I | ATCGAT | 1 cut(s) | 706 |
| BsaI | GGTCTC | 2 cut(s) | 286, 517 |
| BsaJI | CCNNGG | 2 cut(s) | 211, 442 |
| Bsc4I | CCNNNNNNNGG | 3 cut(s) | 23, 24, 626 |
| Bse1I | ACTGG | 2 cut(s) | 274, 505 |
| BseCI | ATCGAT | 1 cut(s) | 706 |
| BseDI | CCNNGG | 2 cut(s) | 211, 442 |
| BseLI | CCNNNNNNNGG | 3 cut(s) | 23, 24, 626 |
| BseNI | ACTGG | 2 cut(s) | 274, 505 |
| BseSI | GKGCMC | 1 cut(s) | 340 |
| BseXI | GCAGC | 1 cut(s) | 339 |
| BshFI | GGCC | 6 cut(s) | 143, 170, 309, 374, 401, 618 |
| BshVI | ATCGAT | 1 cut(s) | 706 |
| BsiHKAI | GWGCWC | 1 cut(s) | 745 |
| BsiHKCI | CYCGRG | 2 cut(s) | 212, 443 |
| BsiSI | CCGG | 6 cut(s) | 24, 300, 310, 328, 531, 559 |
| BslFI | GGGAC | 1 cut(s) | 130 |
| BslI | CCNNNNNNNGG | 3 cut(s) | 23, 24, 626 |
| BsmAI | GTCTC | 4 cut(s) | 219, 286, 450, 517 |
| BsmBI | CGTCTC | 2 cut(s) | 219, 450 |
| BsmFI | GGGAC | 1 cut(s) | 130 |
| BsnI | GGCC | 6 cut(s) | 143, 170, 309, 374, 401, 618 |
| Bso31I | GGTCTC | 2 cut(s) | 286, 517 |
| BsoBI | CYCGRG | 2 cut(s) | 212, 443 |
| Bsp119I | TTCGAA | 3 cut(s) | 70, 574, 773 |
| Bsp1286I | GDGCHC | 2 cut(s) | 340, 745 |
| Bsp143I | GATC | 3 cut(s) | 642, 703, 712 |
| BspACI | CCGC | 1 cut(s) | 805 |
| BspANI | GGCC | 6 cut(s) | 143, 170, 309, 374, 401, 618 |
| BspDI | ATCGAT | 1 cut(s) | 706 |
| BspLI | GGNNCC | 2 cut(s) | 29, 118 |
| BspPI | GGATC | 1 cut(s) | 637 |
| BspT104I | TTCGAA | 3 cut(s) | 70, 574, 773 |
| BspTNI | GGTCTC | 2 cut(s) | 286, 517 |
| BsrI | ACTGG | 2 cut(s) | 274, 505 |
| BssECI | CCNNGG | 2 cut(s) | 211, 442 |
| BssMI | GATC | 3 cut(s) | 642, 703, 712 |
| Bst4CI | ACNGT | 1 cut(s) | 667 |
| BstBI | TTCGAA | 3 cut(s) | 70, 574, 773 |
| BstC8I | GCNNGC | 1 cut(s) | 693 |
| BstHHI | GCGC | 1 cut(s) | 769 |
| BstKTI | GATC | 3 cut(s) | 645, 706, 715 |
| BstMAI | GTCTC | 4 cut(s) | 219, 286, 450, 517 |
| BstMBI | GATC | 3 cut(s) | 642, 703, 712 |
| BstMWI | GCNNNNNNNGC | 6 cut(s) | 11, 20, 176, 269, 407, 766 |
| BstSCI | CCNGG | 1 cut(s) | 23 |
| BstSFI | CTRYAG | 1 cut(s) | 368 |
| BstSLI | GKGCMC | 1 cut(s) | 340 |
| BstV1I | GCAGC | 1 cut(s) | 339 |
| BstV2I | GAAGAC | 2 cut(s) | 199, 601 |
| Bsu15I | ATCGAT | 1 cut(s) | 706 |
| BsuRI | GGCC | 6 cut(s) | 143, 170, 309, 374, 401, 618 |
| BsuTUI | ATCGAT | 1 cut(s) | 706 |
| BtrI | CACGTC | 2 cut(s) | 229, 460 |
| BtsIMutI | CAGTG | 1 cut(s) | 789 |
| Cac8I | GCNNGC | 1 cut(s) | 693 |
| CfoI | GCGC | 1 cut(s) | 769 |
| Cfr13I | GGNCC | 2 cut(s) | 117, 617 |
| ClaI | ATCGAT | 1 cut(s) | 706 |
| CseI | GACGC | 1 cut(s) | 766 |
| CspCI | CAANNNNNGTGG | 2 cut(s) | 40, 75 |
| CviAII | CATG | 2 cut(s) | 254, 485 |
| DpnI | GATC | 3 cut(s) | 644, 705, 714 |
| DpnII | GATC | 3 cut(s) | 642, 703, 712 |
| DraI | TTTAAA | 1 cut(s) | 781 |
| EaeI | YGGCCR | 1 cut(s) | 307 |
| Eco31I | GGTCTC | 2 cut(s) | 286, 517 |
| Eco47I | GGWCC | 1 cut(s) | 117 |
| Eco88I | CYCGRG | 2 cut(s) | 212, 443 |
| Esp3I | CGTCTC | 2 cut(s) | 219, 450 |
| FaeI | CATG | 2 cut(s) | 257, 488 |
| FaiI | YATR | 5 cut(s) | 255, 486, 607, 609, 750 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 663, 695 |
| FaqI | GGGAC | 1 cut(s) | 130 |
| FatI | CATG | 2 cut(s) | 253, 484 |
| FbaI | TGATCA | 1 cut(s) | 712 |
| Fnu4HI | GCNGC | 1 cut(s) | 353 |
| Fsp4HI | GCNGC | 1 cut(s) | 353 |
| FspBI | CTAG | 2 cut(s) | 104, 137 |
| GlaI | GCGC | 1 cut(s) | 768 |
| GluI | GCNGC | 1 cut(s) | 353 |
| HaeIII | GGCC | 6 cut(s) | 143, 170, 309, 374, 401, 618 |
| HapII | CCGG | 6 cut(s) | 24, 300, 310, 328, 531, 559 |
| HgaI | GACGC | 1 cut(s) | 766 |
| HhaI | GCGC | 1 cut(s) | 769 |
| Hin1II | CATG | 2 cut(s) | 257, 488 |
| Hin6I | GCGC | 1 cut(s) | 767 |
| HinP1I | GCGC | 1 cut(s) | 767 |
| HinfI | GANTC | 2 cut(s) | 220, 451 |
| HpaII | CCGG | 6 cut(s) | 24, 300, 310, 328, 531, 559 |
| HphI | GGTGA | 4 cut(s) | 482, 505, 679, 707 |
| Hpy166II | GTNNAC | 1 cut(s) | 496 |
| Hpy188I | TCNGA | 2 cut(s) | 429, 542 |
| Hpy188III | TCNNGA | 6 cut(s) | 137, 157, 224, 388, 455, 738 |
| Hpy8I | GTNNAC | 1 cut(s) | 496 |
| HpyAV | CCTTC | 3 cut(s) | 366, 570, 780 |
| HpyCH4III | ACNGT | 1 cut(s) | 667 |
| HpyCH4IV | ACGT | 2 cut(s) | 228, 459 |
| HpyF10VI | GCNNNNNNNGC | 6 cut(s) | 11, 20, 176, 269, 407, 766 |
| HpySE526I | ACGT | 2 cut(s) | 228, 459 |
| Hsp92II | CATG | 2 cut(s) | 257, 488 |
| HspAI | GCGC | 1 cut(s) | 767 |
| Ksp22I | TGATCA | 1 cut(s) | 712 |
| Kzo9I | GATC | 3 cut(s) | 642, 703, 712 |
| LmnI | GCTCC | 1 cut(s) | 19 |
| Lsp1109I | GCAGC | 1 cut(s) | 339 |
| LweI | GCATC | 1 cut(s) | 14 |
| MaeI | CTAG | 2 cut(s) | 104, 137 |
| MaeII | ACGT | 2 cut(s) | 228, 459 |
| MaeIII | GTNAC | 1 cut(s) | 787 |
| MalI | GATC | 3 cut(s) | 644, 705, 714 |
| MboI | GATC | 3 cut(s) | 642, 703, 712 |
| MboII | GAAGA | 8 cut(s) | 172, 199, 331, 403, 430, 562, 606, 647 |
| MfeI | CAATTG | 1 cut(s) | 45 |
| MhlI | GDGCHC | 2 cut(s) | 340, 745 |
| MroXI | GAANNNNTTC | 1 cut(s) | 37 |
| MseI | TTAA | 1 cut(s) | 780 |
| MspI | CCGG | 6 cut(s) | 24, 300, 310, 328, 531, 559 |
| MspR9I | CCNGG | 1 cut(s) | 25 |
| MunI | CAATTG | 1 cut(s) | 45 |
| MwoI | GCNNNNNNNGC | 6 cut(s) | 11, 20, 176, 269, 407, 766 |
| NciI | CCSGG | 1 cut(s) | 25 |
| NdeII | GATC | 3 cut(s) | 642, 703, 712 |
| NlaIII | CATG | 2 cut(s) | 257, 488 |
| NlaIV | GGNNCC | 2 cut(s) | 29, 118 |
| NmeAIII | GCCGAG | 1 cut(s) | 343 |
| NmuCI | GTSAC | 1 cut(s) | 787 |
| NspV | TTCGAA | 3 cut(s) | 70, 574, 773 |
| PdmI | GAANNNNTTC | 1 cut(s) | 37 |
| PfeI | GAWTC | 2 cut(s) | 220, 451 |
| PkrI | GCNGC | 1 cut(s) | 354 |
| PspN4I | GGNNCC | 2 cut(s) | 29, 118 |
| PspPI | GGNCC | 2 cut(s) | 117, 617 |
| SaqAI | TTAA | 1 cut(s) | 780 |
| SatI | GCNGC | 1 cut(s) | 353 |
| Sau3AI | GATC | 3 cut(s) | 642, 703, 712 |
| Sau96I | GGNCC | 2 cut(s) | 117, 617 |
| ScrFI | CCNGG | 1 cut(s) | 25 |
| SduI | GDGCHC | 2 cut(s) | 340, 745 |
| SetI | ASST | 7 cut(s) | 16, 156, 231, 387, 462, 495, 663 |
| SfaNI | GCATC | 1 cut(s) | 14 |
| SfcI | CTRYAG | 1 cut(s) | 368 |
| SfuI | TTCGAA | 3 cut(s) | 70, 574, 773 |
| SinI | GGWCC | 1 cut(s) | 117 |
| SmlI | CTYRAG | 3 cut(s) | 155, 386, 680 |
| SmoI | CTYRAG | 3 cut(s) | 155, 386, 680 |
| SpeI | ACTAGT | 1 cut(s) | 103 |
| SsiI | CCGC | 1 cut(s) | 805 |
| SspMI | CTAG | 2 cut(s) | 104, 137 |
| StyD4I | CCNGG | 1 cut(s) | 23 |
| TaaI | ACNGT | 1 cut(s) | 667 |
| TaiI | ACGT | 2 cut(s) | 231, 462 |
| TaqI | TCGA | 7 cut(s) | 70, 100, 223, 454, 574, 706, 773 |
| TfiI | GAWTC | 2 cut(s) | 220, 451 |
| Tru1I | TTAA | 1 cut(s) | 780 |
| Tru9I | TTAA | 1 cut(s) | 780 |
| TscAI | CASTG | 1 cut(s) | 796 |
| TseFI | GTSAC | 1 cut(s) | 787 |
| TseI | GCWGC | 1 cut(s) | 352 |
| Tsp45I | GTSAC | 1 cut(s) | 787 |
| TspDTI | ATGAA | 4 cut(s) | 81, 85, 424, 648 |
| TspRI | CASTG | 1 cut(s) | 796 |
| VpaK11BI | GGWCC | 1 cut(s) | 117 |
| XapI | RAATTY | 7 cut(s) | 126, 147, 200, 313, 378, 431, 544 |
| XbaI | TCTAGA | 1 cut(s) | 136 |
| XmnI | GAANNNNTTC | 1 cut(s) | 37 |
| XspI | CTAG | 2 cut(s) | 104, 137 |