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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AciI | CCGC | 5 cut(s) | 79, 361, 595, 630, 641 |
| AcsI | RAATTY | 1 cut(s) | 428 |
| AcyI | GRCGYC | 1 cut(s) | 920 |
| AfaI | GTAC | 1 cut(s) | 248 |
| AfiI | CCNNNNNNNGG | 4 cut(s) | 614, 677, 801, 902 |
| AgsI | TTSAA | 2 cut(s) | 376, 704 |
| AjiI | CACGTC | 1 cut(s) | 136 |
| AjnI | CCWGG | 2 cut(s) | 129, 735 |
| AjuI | GAANNNNNNNTTGG | 4 cut(s) | 288, 320, 821, 853 |
| AluBI | AGCT | 3 cut(s) | 155, 161, 800 |
| AluI | AGCT | 3 cut(s) | 155, 161, 800 |
| Alw26I | GTCTC | 5 cut(s) | 292, 496, 572, 653, 885 |
| Ama87I | CYCGRG | 1 cut(s) | 119 |
| AoxI | GGCC | 4 cut(s) | 728, 786, 792, 815 |
| ApeKI | GCWGC | 1 cut(s) | 179 |
| ApoI | RAATTY | 1 cut(s) | 428 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 405 |
| AspLEI | GCGC | 1 cut(s) | 752 |
| AspS9I | GGNCC | 3 cut(s) | 542, 793, 816 |
| AsuC2I | CCSGG | 1 cut(s) | 897 |
| AsuII | TTCGAA | 1 cut(s) | 827 |
| AvaI | CYCGRG | 1 cut(s) | 119 |
| AvaII | GGWCC | 1 cut(s) | 542 |
| BbsI | GAAGAC | 3 cut(s) | 273, 476, 658 |
| BbvI | GCAGC | 1 cut(s) | 191 |
| BccI | CCATC | 3 cut(s) | 215, 342, 496 |
| BciT130I | CCWGG | 2 cut(s) | 131, 737 |
| BciVI | GTATCC | 1 cut(s) | 826 |
| BclI | TGATCA | 1 cut(s) | 858 |
| BcnI | CCSGG | 1 cut(s) | 897 |
| BcoDI | GTCTC | 5 cut(s) | 292, 496, 572, 653, 885 |
| BfaI | CTAG | 4 cut(s) | 126, 338, 633, 801 |
| BfmI | CTRYAG | 2 cut(s) | 96, 144 |
| BfoI | RGCGCY | 1 cut(s) | 753 |
| BfuI | GTATCC | 1 cut(s) | 826 |
| BglI | GCCNNNNNGGC | 1 cut(s) | 188 |
| BisI | GCNGC | 1 cut(s) | 180 |
| BlsI | GCNGC | 1 cut(s) | 181 |
| Bme1390I | CCNGG | 3 cut(s) | 131, 737, 897 |
| Bme18I | GGWCC | 1 cut(s) | 542 |
| BmeT110I | CYCGRG | 1 cut(s) | 119 |
| BmgBI | CACGTC | 1 cut(s) | 136 |
| BmgT120I | GGNCC | 3 cut(s) | 542, 793, 816 |
| BmiI | GGNNCC | 3 cut(s) | 242, 543, 795 |
| BmrFI | CCNGG | 3 cut(s) | 131, 737, 897 |
| BmsI | GCATC | 3 cut(s) | 94, 442, 795 |
| BpiI | GAAGAC | 3 cut(s) | 273, 476, 658 |
| BplI | GAGNNNNNCTC | 2 cut(s) | 757, 789 |
| BpmI | CTGGAG | 1 cut(s) | 227 |
| Bpu14I | TTCGAA | 1 cut(s) | 827 |
| BpuEI | CTTGAG | 2 cut(s) | 74, 141 |
| BpuMI | CCSGG | 1 cut(s) | 897 |
| Bsa29I | ATCGAT | 1 cut(s) | 525 |
| BsaHI | GRCGYC | 1 cut(s) | 920 |
| BsaI | GGTCTC | 1 cut(s) | 292 |
| BsaJI | CCNNGG | 2 cut(s) | 789, 819 |
| Bsc4I | CCNNNNNNNGG | 4 cut(s) | 614, 677, 801, 902 |
| Bse1I | ACTGG | 2 cut(s) | 49, 244 |
| BseBI | CCWGG | 2 cut(s) | 131, 737 |
| BseCI | ATCGAT | 1 cut(s) | 525 |
| BseDI | CCNNGG | 2 cut(s) | 789, 819 |
| BseGI | GGATG | 4 cut(s) | 210, 238, 703, 810 |
| BseLI | CCNNNNNNNGG | 4 cut(s) | 614, 677, 801, 902 |
| BseMII | CTCAG | 1 cut(s) | 935 |
| BseNI | ACTGG | 2 cut(s) | 49, 244 |
| BseXI | GCAGC | 1 cut(s) | 191 |
| BseYI | CCCAGC | 1 cut(s) | 796 |
| Bsh1285I | CGRYCG | 1 cut(s) | 529 |
| BshFI | GGCC | 4 cut(s) | 730, 788, 794, 817 |
| BshVI | ATCGAT | 1 cut(s) | 525 |
| BsiEI | CGRYCG | 1 cut(s) | 529 |
| BsiHKCI | CYCGRG | 1 cut(s) | 119 |
| BsiSI | CCGG | 1 cut(s) | 896 |
| BslFI | GGGAC | 1 cut(s) | 931 |
| BslI | CCNNNNNNNGG | 4 cut(s) | 614, 677, 801, 902 |
| BsmAI | GTCTC | 5 cut(s) | 292, 496, 572, 653, 885 |
| BsmBI | CGTCTC | 2 cut(s) | 496, 885 |
| BsmFI | GGGAC | 1 cut(s) | 931 |
| BsnI | GGCC | 4 cut(s) | 730, 788, 794, 817 |
| Bso31I | GGTCTC | 1 cut(s) | 292 |
| BsoBI | CYCGRG | 1 cut(s) | 119 |
| Bsp119I | TTCGAA | 1 cut(s) | 827 |
| Bsp143I | GATC | 4 cut(s) | 444, 526, 619, 858 |
| Bsp19I | CCATGG | 1 cut(s) | 789 |
| BspACI | CCGC | 5 cut(s) | 79, 361, 595, 630, 641 |
| BspANI | GGCC | 4 cut(s) | 730, 788, 794, 817 |
| BspCNI | CTCAG | 1 cut(s) | 936 |
| BspDI | ATCGAT | 1 cut(s) | 525 |
| BspHI | TCATGA | 1 cut(s) | 883 |
| BspLI | GGNNCC | 3 cut(s) | 242, 543, 795 |
| BspT104I | TTCGAA | 1 cut(s) | 827 |
| BspTNI | GGTCTC | 1 cut(s) | 292 |
| BsrI | ACTGG | 2 cut(s) | 49, 244 |
| BssECI | CCNNGG | 2 cut(s) | 789, 819 |
| BssMI | GATC | 4 cut(s) | 444, 526, 619, 858 |
| BssNI | GRCGYC | 1 cut(s) | 920 |
| BssT1I | CCWWGG | 1 cut(s) | 789 |
| Bst2UI | CCWGG | 2 cut(s) | 131, 737 |
| Bst4CI | ACNGT | 3 cut(s) | 145, 664, 911 |
| BstACI | GRCGYC | 1 cut(s) | 920 |
| BstBI | TTCGAA | 1 cut(s) | 827 |
| BstC8I | GCNNGC | 2 cut(s) | 83, 153 |
| BstDEI | CTNAG | 3 cut(s) | 184, 510, 944 |
| BstDSI | CCRYGG | 2 cut(s) | 789, 819 |
| BstEII | GGTNACC | 1 cut(s) | 905 |
| BstF5I | GGATG | 4 cut(s) | 210, 238, 703, 810 |
| BstH2I | RGCGCY | 1 cut(s) | 753 |
| BstHHI | GCGC | 1 cut(s) | 752 |
| BstKTI | GATC | 4 cut(s) | 447, 529, 622, 861 |
| BstMAI | GTCTC | 5 cut(s) | 292, 496, 572, 653, 885 |
| BstMBI | GATC | 4 cut(s) | 444, 526, 619, 858 |
| BstMCI | CGRYCG | 1 cut(s) | 529 |
| BstMWI | GCNNNNNNNGC | 7 cut(s) | 167, 176, 188, 197, 638, 785, 814 |
| BstNI | CCWGG | 2 cut(s) | 131, 737 |
| BstPI | GGTNACC | 1 cut(s) | 905 |
| BstSCI | CCNGG | 3 cut(s) | 129, 735, 895 |
| BstSFI | CTRYAG | 2 cut(s) | 96, 144 |
| BstV1I | GCAGC | 1 cut(s) | 191 |
| BstV2I | GAAGAC | 3 cut(s) | 273, 476, 658 |
| Bsu15I | ATCGAT | 1 cut(s) | 525 |
| BsuI | GTATCC | 1 cut(s) | 826 |
| BsuRI | GGCC | 4 cut(s) | 730, 788, 794, 817 |
| BsuTUI | ATCGAT | 1 cut(s) | 525 |
| BtgI | CCRYGG | 2 cut(s) | 789, 819 |
| BtgZI | GCGATG | 1 cut(s) | 470 |
| BtrI | CACGTC | 1 cut(s) | 136 |
| BtsCI | GGATG | 4 cut(s) | 210, 238, 703, 810 |
| Cac8I | GCNNGC | 2 cut(s) | 83, 153 |
| CciI | TCATGA | 1 cut(s) | 883 |
| CfoI | GCGC | 1 cut(s) | 752 |
| Cfr13I | GGNCC | 3 cut(s) | 542, 793, 816 |
| ClaI | ATCGAT | 1 cut(s) | 525 |
| CseI | GACGC | 1 cut(s) | 928 |
| Csp6I | GTAC | 1 cut(s) | 247 |
| CspCI | CAANNNNNGTGG | 2 cut(s) | 748, 783 |
| CviAII | CATG | 4 cut(s) | 694, 746, 790, 884 |
| CviQI | GTAC | 1 cut(s) | 247 |
| DdeI | CTNAG | 3 cut(s) | 184, 510, 944 |
| DpnI | GATC | 4 cut(s) | 446, 528, 621, 860 |
| DpnII | GATC | 4 cut(s) | 444, 526, 619, 858 |
| EciI | GGCGGA | 2 cut(s) | 68, 584 |
| Eco130I | CCWWGG | 1 cut(s) | 789 |
| Eco31I | GGTCTC | 1 cut(s) | 292 |
| Eco32I | GATATC | 2 cut(s) | 56, 76 |
| Eco47I | GGWCC | 1 cut(s) | 542 |
| Eco88I | CYCGRG | 1 cut(s) | 119 |
| Eco91I | GGTNACC | 1 cut(s) | 905 |
| EcoO109I | RGGNCCY | 1 cut(s) | 542 |
| EcoO65I | GGTNACC | 1 cut(s) | 905 |
| EcoRI | GAATTC | 1 cut(s) | 428 |
| EcoRII | CCWGG | 2 cut(s) | 129, 735 |
| EcoRV | GATATC | 2 cut(s) | 56, 76 |
| EcoT14I | CCWWGG | 1 cut(s) | 789 |
| EcoT22I | ATGCAT | 1 cut(s) | 747 |
| ErhI | CCWWGG | 1 cut(s) | 789 |
| Esp3I | CGTCTC | 2 cut(s) | 496, 885 |
| FaeI | CATG | 4 cut(s) | 697, 749, 793, 887 |
| FaqI | GGGAC | 1 cut(s) | 931 |
| FatI | CATG | 4 cut(s) | 693, 745, 789, 883 |
| FauI | CCCGC | 1 cut(s) | 634 |
| FauNDI | CATATG | 1 cut(s) | 228 |
| FbaI | TGATCA | 1 cut(s) | 858 |
| Fnu4HI | GCNGC | 1 cut(s) | 180 |
| FokI | GGATG | 4 cut(s) | 197, 245, 710, 817 |
| Fsp4HI | GCNGC | 1 cut(s) | 180 |
| FspBI | CTAG | 4 cut(s) | 126, 338, 633, 801 |
| GlaI | GCGC | 1 cut(s) | 751 |
| GluI | GCNGC | 1 cut(s) | 180 |
| GsaI | CCCAGC | 1 cut(s) | 800 |
| GsuI | CTGGAG | 1 cut(s) | 227 |
| HaeII | RGCGCY | 1 cut(s) | 753 |
| HaeIII | GGCC | 4 cut(s) | 730, 788, 794, 817 |
| HapII | CCGG | 1 cut(s) | 896 |
| HgaI | GACGC | 1 cut(s) | 928 |
| HhaI | GCGC | 1 cut(s) | 752 |
| Hin1I | GRCGYC | 1 cut(s) | 920 |
| Hin1II | CATG | 4 cut(s) | 697, 749, 793, 887 |
| Hin6I | GCGC | 1 cut(s) | 750 |
| HinP1I | GCGC | 1 cut(s) | 750 |
| HindIII | AAGCTT | 1 cut(s) | 159 |
| HinfI | GANTC | 8 cut(s) | 102, 115, 220, 472, 522, 580, 868, 889 |
| HpaII | CCGG | 1 cut(s) | 896 |
| Hpy188I | TCNGA | 1 cut(s) | 400 |
| Hpy188III | TCNNGA | 8 cut(s) | 51, 71, 119, 332, 386, 865, 884, 943 |
| Hpy99I | CGWCG | 1 cut(s) | 676 |
| HpyAV | CCTTC | 3 cut(s) | 270, 493, 823 |
| HpyCH4III | ACNGT | 3 cut(s) | 145, 664, 911 |
| HpyCH4IV | ACGT | 4 cut(s) | 135, 312, 567, 928 |
| HpyCH4V | TGCA | 3 cut(s) | 497, 613, 745 |
| HpyF10VI | GCNNNNNNNGC | 7 cut(s) | 167, 176, 188, 197, 638, 785, 814 |
| HpyF3I | CTNAG | 3 cut(s) | 184, 510, 944 |
| HpySE526I | ACGT | 4 cut(s) | 135, 312, 567, 928 |
| Hsp92I | GRCGYC | 1 cut(s) | 920 |
| Hsp92II | CATG | 4 cut(s) | 697, 749, 793, 887 |
| HspAI | GCGC | 1 cut(s) | 750 |
| Ksp22I | TGATCA | 1 cut(s) | 858 |
| Kzo9I | GATC | 4 cut(s) | 444, 526, 619, 858 |
| LmnI | GCTCC | 2 cut(s) | 34, 246 |
| Lsp1109I | GCAGC | 1 cut(s) | 191 |
| LweI | GCATC | 3 cut(s) | 94, 442, 795 |
| MaeI | CTAG | 4 cut(s) | 126, 338, 633, 801 |
| MaeII | ACGT | 4 cut(s) | 135, 312, 567, 928 |
| MaeIII | GTNAC | 5 cut(s) | 5, 317, 647, 780, 905 |
| MalI | GATC | 4 cut(s) | 446, 528, 621, 860 |
| MboI | GATC | 4 cut(s) | 444, 526, 619, 858 |
| MboII | GAAGA | 6 cut(s) | 275, 278, 308, 481, 658, 884 |
| MluCI | AATT | 3 cut(s) | 17, 428, 719 |
| MlyI | GAGTC | 4 cut(s) | 214, 466, 574, 862 |
| MmeI | TCCRAC | 2 cut(s) | 550, 608 |
| MnlI | CCTC | 4 cut(s) | 181, 368, 807, 933 |
| Mph1103I | ATGCAT | 1 cut(s) | 747 |
| MroXI | GAANNNNTTC | 1 cut(s) | 405 |
| MseI | TTAA | 3 cut(s) | 414, 422, 602 |
| MslI | CAYNNNNRTG | 3 cut(s) | 215, 231, 654 |
| MspI | CCGG | 1 cut(s) | 896 |
| MspR9I | CCNGG | 3 cut(s) | 131, 737, 897 |
| MvaI | CCWGG | 2 cut(s) | 131, 737 |
| MwoI | GCNNNNNNNGC | 7 cut(s) | 167, 176, 188, 197, 638, 785, 814 |
| NciI | CCSGG | 1 cut(s) | 897 |
| NcoI | CCATGG | 1 cut(s) | 789 |
| NdeI | CATATG | 1 cut(s) | 228 |
| NdeII | GATC | 4 cut(s) | 444, 526, 619, 858 |
| NlaIII | CATG | 4 cut(s) | 697, 749, 793, 887 |
| NlaIV | GGNNCC | 3 cut(s) | 242, 543, 795 |
| NmuCI | GTSAC | 1 cut(s) | 647 |
| NsiI | ATGCAT | 1 cut(s) | 747 |
| NspV | TTCGAA | 1 cut(s) | 827 |
| PaeR7I | CTCGAG | 1 cut(s) | 119 |
| PagI | TCATGA | 1 cut(s) | 883 |
| PdmI | GAANNNNTTC | 1 cut(s) | 405 |
| PfeI | GAWTC | 4 cut(s) | 102, 115, 522, 889 |
| PkrI | GCNGC | 1 cut(s) | 181 |
| Ple19I | CGATCG | 1 cut(s) | 529 |
| PleI | GAGTC | 4 cut(s) | 214, 466, 574, 862 |
| PpsI | GAGTC | 4 cut(s) | 214, 466, 574, 862 |
| PpuMI | RGGWCCY | 1 cut(s) | 542 |
| Psp5II | RGGWCCY | 1 cut(s) | 542 |
| Psp6I | CCWGG | 2 cut(s) | 129, 735 |
| PspEI | GGTNACC | 1 cut(s) | 905 |
| PspFI | CCCAGC | 1 cut(s) | 796 |
| PspGI | CCWGG | 2 cut(s) | 129, 735 |
| PspN4I | GGNNCC | 3 cut(s) | 242, 543, 795 |
| PspPI | GGNCC | 3 cut(s) | 542, 793, 816 |
| PspPPI | RGGWCCY | 1 cut(s) | 542 |
| PvuI | CGATCG | 1 cut(s) | 529 |
| RsaI | GTAC | 1 cut(s) | 248 |
| RsaNI | GTAC | 1 cut(s) | 247 |
| RseI | CAYNNNNRTG | 3 cut(s) | 215, 231, 654 |
| SaqAI | TTAA | 3 cut(s) | 414, 422, 602 |
| SatI | GCNGC | 1 cut(s) | 180 |
| Sau3AI | GATC | 4 cut(s) | 444, 526, 619, 858 |
| Sau96I | GGNCC | 3 cut(s) | 542, 793, 816 |
| SchI | GAGTC | 4 cut(s) | 214, 466, 574, 862 |
| ScrFI | CCNGG | 3 cut(s) | 131, 737, 897 |
| SfaNI | GCATC | 3 cut(s) | 94, 442, 795 |
| SfcI | CTRYAG | 2 cut(s) | 96, 144 |
| Sfr274I | CTCGAG | 1 cut(s) | 119 |
| SfuI | TTCGAA | 1 cut(s) | 827 |
| SinI | GGWCC | 1 cut(s) | 542 |
| SlaI | CTCGAG | 1 cut(s) | 119 |
| SmiMI | CAYNNNNRTG | 3 cut(s) | 215, 231, 654 |
| SmlI | CTYRAG | 3 cut(s) | 89, 119, 156 |
| SmoI | CTYRAG | 3 cut(s) | 89, 119, 156 |
| Sse9I | AATT | 3 cut(s) | 17, 428, 719 |
| SsiI | CCGC | 5 cut(s) | 79, 361, 595, 630, 641 |
| SspMI | CTAG | 4 cut(s) | 126, 338, 633, 801 |
| StyD4I | CCNGG | 3 cut(s) | 129, 735, 895 |
| StyI | CCWWGG | 1 cut(s) | 789 |
| TaaI | ACNGT | 3 cut(s) | 145, 664, 911 |
| TaiI | ACGT | 4 cut(s) | 138, 315, 570, 931 |
| TaqI | TCGA | 5 cut(s) | 120, 294, 520, 525, 827 |
| TasI | AATT | 3 cut(s) | 17, 428, 719 |
| TfiI | GAWTC | 4 cut(s) | 102, 115, 522, 889 |
| Tru1I | TTAA | 3 cut(s) | 414, 422, 602 |
| Tru9I | TTAA | 3 cut(s) | 414, 422, 602 |
| TseFI | GTSAC | 1 cut(s) | 647 |
| TseI | GCWGC | 1 cut(s) | 179 |
| Tsp45I | GTSAC | 1 cut(s) | 647 |
| TspDTI | ATGAA | 2 cut(s) | 272, 276 |
| TspGWI | ACGGA | 2 cut(s) | 305, 867 |
| VpaK11BI | GGWCC | 1 cut(s) | 542 |
| XapI | RAATTY | 1 cut(s) | 428 |
| XhoI | CTCGAG | 1 cut(s) | 119 |
| XmnI | GAANNNNTTC | 1 cut(s) | 405 |
| XspI | CTAG | 4 cut(s) | 126, 338, 633, 801 |
| Zsp2I | ATGCAT | 1 cut(s) | 747 |