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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AanI | TTATAA | 1 cut(s) | 177 |
| AasI | GACNNNNNNGTC | 1 cut(s) | 513 |
| AccB1I | GGYRCC | 2 cut(s) | 353, 713 |
| AccII | CGCG | 2 cut(s) | 23, 453 |
| AccIII | TCCGGA | 1 cut(s) | 433 |
| AciI | CCGC | 2 cut(s) | 145, 603 |
| AclI | AACGTT | 1 cut(s) | 96 |
| AcyI | GRCGYC | 4 cut(s) | 354, 684, 696, 714 |
| AfiI | CCNNNNNNNGG | 4 cut(s) | 464, 535, 658, 662 |
| AflIII | ACRYGT | 1 cut(s) | 583 |
| AgsI | TTSAA | 2 cut(s) | 160, 294 |
| AjnI | CCWGG | 1 cut(s) | 718 |
| AluBI | AGCT | 4 cut(s) | 64, 188, 346, 368 |
| AluI | AGCT | 4 cut(s) | 64, 188, 346, 368 |
| Alw21I | GWGCWC | 2 cut(s) | 348, 565 |
| Alw26I | GTCTC | 1 cut(s) | 280 |
| Alw44I | GTGCAC | 1 cut(s) | 561 |
| Ama87I | CYCGRG | 1 cut(s) | 628 |
| Aor13HI | TCCGGA | 1 cut(s) | 433 |
| ApaLI | GTGCAC | 1 cut(s) | 561 |
| ApeKI | GCWGC | 3 cut(s) | 82, 623, 728 |
| AspA2I | CCTAGG | 1 cut(s) | 656 |
| AspLEI | GCGC | 4 cut(s) | 25, 356, 455, 716 |
| AspS9I | GGNCC | 1 cut(s) | 515 |
| AsuHPI | GGTGA | 3 cut(s) | 719, 727, 734 |
| AsuII | TTCGAA | 1 cut(s) | 748 |
| AvaI | CYCGRG | 1 cut(s) | 628 |
| AvaII | GGWCC | 1 cut(s) | 515 |
| AvrII | CCTAGG | 1 cut(s) | 656 |
| BaeGI | GKGCMC | 2 cut(s) | 565, 635 |
| BanI | GGYRCC | 2 cut(s) | 353, 713 |
| BanII | GRGCYC | 1 cut(s) | 348 |
| BbsI | GAAGAC | 2 cut(s) | 57, 260 |
| Bbv12I | GWGCWC | 2 cut(s) | 348, 565 |
| BbvI | GCAGC | 3 cut(s) | 94, 610, 715 |
| BccI | CCATC | 5 cut(s) | 126, 202, 686, 704, 708 |
| BcgI | CGANNNNNNTGC | 2 cut(s) | 602, 636 |
| BciT130I | CCWGG | 1 cut(s) | 720 |
| BcoDI | GTCTC | 1 cut(s) | 280 |
| BfaI | CTAG | 2 cut(s) | 408, 657 |
| BfmI | CTRYAG | 1 cut(s) | 445 |
| BfoI | RGCGCY | 2 cut(s) | 357, 717 |
| BisI | GCNGC | 3 cut(s) | 83, 624, 729 |
| BlnI | CCTAGG | 1 cut(s) | 656 |
| BlsI | GCNGC | 3 cut(s) | 84, 625, 730 |
| Bme1390I | CCNGG | 1 cut(s) | 720 |
| Bme18I | GGWCC | 1 cut(s) | 515 |
| BmeT110I | CYCGRG | 1 cut(s) | 628 |
| BmgT120I | GGNCC | 1 cut(s) | 515 |
| BmiI | GGNNCC | 3 cut(s) | 355, 607, 715 |
| BmrFI | CCNGG | 1 cut(s) | 720 |
| BmsI | GCATC | 2 cut(s) | 336, 715 |
| BpiI | GAAGAC | 2 cut(s) | 57, 260 |
| Bpu14I | TTCGAA | 1 cut(s) | 748 |
| BpuEI | CTTGAG | 1 cut(s) | 98 |
| BsaHI | GRCGYC | 4 cut(s) | 354, 684, 696, 714 |
| BsaJI | CCNNGG | 6 cut(s) | 414, 616, 627, 656, 687, 718 |
| BsaWI | WCCGGW | 1 cut(s) | 433 |
| Bsc4I | CCNNNNNNNGG | 4 cut(s) | 464, 535, 658, 662 |
| Bse3DI | GCAATG | 1 cut(s) | 288 |
| BseAI | TCCGGA | 1 cut(s) | 433 |
| BseBI | CCWGG | 1 cut(s) | 720 |
| BseDI | CCNNGG | 6 cut(s) | 414, 616, 627, 656, 687, 718 |
| BseGI | GGATG | 1 cut(s) | 697 |
| BseLI | CCNNNNNNNGG | 4 cut(s) | 464, 535, 658, 662 |
| BseMI | GCAATG | 1 cut(s) | 288 |
| BseSI | GKGCMC | 2 cut(s) | 565, 635 |
| BseXI | GCAGC | 3 cut(s) | 94, 610, 715 |
| BsgI | GTGCAG | 1 cut(s) | 687 |
| Bsh1236I | CGCG | 2 cut(s) | 23, 453 |
| BshNI | GGYRCC | 2 cut(s) | 353, 713 |
| BsiHKAI | GWGCWC | 2 cut(s) | 348, 565 |
| BsiHKCI | CYCGRG | 1 cut(s) | 628 |
| BsiSI | CCGG | 1 cut(s) | 434 |
| BslFI | GGGAC | 3 cut(s) | 187, 509, 656 |
| BslI | CCNNNNNNNGG | 4 cut(s) | 464, 535, 658, 662 |
| BsmAI | GTCTC | 1 cut(s) | 280 |
| BsmBI | CGTCTC | 1 cut(s) | 280 |
| BsmFI | GGGAC | 3 cut(s) | 187, 509, 656 |
| BsoBI | CYCGRG | 1 cut(s) | 628 |
| Bsp119I | TTCGAA | 1 cut(s) | 748 |
| Bsp1286I | GDGCHC | 3 cut(s) | 348, 565, 635 |
| Bsp13I | TCCGGA | 1 cut(s) | 433 |
| Bsp19I | CCATGG | 2 cut(s) | 616, 687 |
| BspACI | CCGC | 2 cut(s) | 145, 603 |
| BspEI | TCCGGA | 1 cut(s) | 433 |
| BspFNI | CGCG | 2 cut(s) | 23, 453 |
| BspHI | TCATGA | 1 cut(s) | 340 |
| BspLI | GGNNCC | 3 cut(s) | 355, 607, 715 |
| BspT104I | TTCGAA | 1 cut(s) | 748 |
| BspT107I | GGYRCC | 2 cut(s) | 353, 713 |
| BsrDI | GCAATG | 1 cut(s) | 288 |
| BssECI | CCNNGG | 6 cut(s) | 414, 616, 627, 656, 687, 718 |
| BssNI | GRCGYC | 4 cut(s) | 354, 684, 696, 714 |
| BssT1I | CCWWGG | 3 cut(s) | 616, 656, 687 |
| Bst2UI | CCWGG | 1 cut(s) | 720 |
| Bst4CI | ACNGT | 1 cut(s) | 572 |
| BstACI | GRCGYC | 4 cut(s) | 354, 684, 696, 714 |
| BstBI | TTCGAA | 1 cut(s) | 748 |
| BstC8I | GCNNGC | 1 cut(s) | 561 |
| BstDEI | CTNAG | 2 cut(s) | 423, 486 |
| BstDSI | CCRYGG | 3 cut(s) | 414, 616, 687 |
| BstF5I | GGATG | 1 cut(s) | 697 |
| BstFNI | CGCG | 2 cut(s) | 23, 453 |
| BstH2I | RGCGCY | 2 cut(s) | 357, 717 |
| BstHHI | GCGC | 4 cut(s) | 25, 356, 455, 716 |
| BstMAI | GTCTC | 1 cut(s) | 280 |
| BstNI | CCWGG | 1 cut(s) | 720 |
| BstSCI | CCNGG | 1 cut(s) | 718 |
| BstSFI | CTRYAG | 1 cut(s) | 445 |
| BstSLI | GKGCMC | 2 cut(s) | 565, 635 |
| BstUI | CGCG | 2 cut(s) | 23, 453 |
| BstV1I | GCAGC | 3 cut(s) | 94, 610, 715 |
| BstV2I | GAAGAC | 2 cut(s) | 57, 260 |
| BtgI | CCRYGG | 3 cut(s) | 414, 616, 687 |
| BtgZI | GCGATG | 1 cut(s) | 145 |
| BtsCI | GGATG | 1 cut(s) | 697 |
| BtsI | GCAGTG | 1 cut(s) | 633 |
| BtsIMutI | CAGTG | 2 cut(s) | 577, 633 |
| Cac8I | GCNNGC | 1 cut(s) | 561 |
| CciI | TCATGA | 1 cut(s) | 340 |
| CfoI | GCGC | 4 cut(s) | 25, 356, 455, 716 |
| Cfr13I | GGNCC | 1 cut(s) | 515 |
| CseI | GACGC | 5 cut(s) | 29, 333, 477, 685, 692 |
| CviAII | CATG | 7 cut(s) | 13, 341, 358, 617, 680, 688, 704 |
| CviJI | RGCY | 9 cut(s) | 64, 141, 188, 346, 368, 427, 608, 655, 662 |
| CviKI_1 | RGCY | 9 cut(s) | 64, 141, 188, 346, 368, 427, 608, 655, 662 |
| DdeI | CTNAG | 2 cut(s) | 423, 486 |
| DinI | GGCGCC | 2 cut(s) | 355, 715 |
| DrdI | GACNNNNNNGTC | 1 cut(s) | 513 |
| DseDI | GACNNNNNNGTC | 1 cut(s) | 513 |
| EciI | GGCGGA | 1 cut(s) | 618 |
| Ecl136II | GAGCTC | 1 cut(s) | 346 |
| Eco130I | CCWWGG | 3 cut(s) | 616, 656, 687 |
| Eco24I | GRGCYC | 1 cut(s) | 348 |
| Eco47I | GGWCC | 1 cut(s) | 515 |
| Eco53kI | GAGCTC | 1 cut(s) | 346 |
| Eco88I | CYCGRG | 1 cut(s) | 628 |
| EcoICRI | GAGCTC | 1 cut(s) | 346 |
| EcoRII | CCWGG | 1 cut(s) | 718 |
| EcoT14I | CCWWGG | 3 cut(s) | 616, 656, 687 |
| EcoT38I | GRGCYC | 1 cut(s) | 348 |
| EgeI | GGCGCC | 2 cut(s) | 355, 715 |
| EheI | GGCGCC | 2 cut(s) | 355, 715 |
| ErhI | CCWWGG | 3 cut(s) | 616, 656, 687 |
| Esp3I | CGTCTC | 1 cut(s) | 280 |
| FaeI | CATG | 7 cut(s) | 16, 344, 361, 620, 683, 691, 707 |
| FaqI | GGGAC | 3 cut(s) | 187, 509, 656 |
| FatI | CATG | 7 cut(s) | 12, 340, 357, 616, 679, 687, 703 |
| FauNDI | CATATG | 1 cut(s) | 520 |
| Fnu4HI | GCNGC | 3 cut(s) | 83, 624, 729 |
| FokI | GGATG | 1 cut(s) | 704 |
| FriOI | GRGCYC | 1 cut(s) | 348 |
| Fsp4HI | GCNGC | 3 cut(s) | 83, 624, 729 |
| FspBI | CTAG | 2 cut(s) | 408, 657 |
| GlaI | GCGC | 4 cut(s) | 24, 355, 454, 715 |
| GluI | GCNGC | 3 cut(s) | 83, 624, 729 |
| HaeII | RGCGCY | 2 cut(s) | 357, 717 |
| HapII | CCGG | 1 cut(s) | 434 |
| HgaI | GACGC | 5 cut(s) | 29, 333, 477, 685, 692 |
| HhaI | GCGC | 4 cut(s) | 25, 356, 455, 716 |
| Hin1I | GRCGYC | 4 cut(s) | 354, 684, 696, 714 |
| Hin1II | CATG | 7 cut(s) | 16, 344, 361, 620, 683, 691, 707 |
| Hin6I | GCGC | 4 cut(s) | 23, 354, 453, 714 |
| HinP1I | GCGC | 4 cut(s) | 23, 354, 453, 714 |
| HincII | GTYRAC | 1 cut(s) | 581 |
| HindII | GTYRAC | 1 cut(s) | 581 |
| HinfI | GANTC | 3 cut(s) | 104, 256, 437 |
| HpaII | CCGG | 1 cut(s) | 434 |
| HphI | GGTGA | 3 cut(s) | 719, 727, 734 |
| Hpy166II | GTNNAC | 3 cut(s) | 563, 581, 646 |
| Hpy188I | TCNGA | 3 cut(s) | 184, 306, 613 |
| Hpy188III | TCNNGA | 5 cut(s) | 101, 116, 341, 434, 504 |
| Hpy8I | GTNNAC | 3 cut(s) | 563, 581, 646 |
| HpyAV | CCTTC | 2 cut(s) | 277, 533 |
| HpyCH4III | ACNGT | 1 cut(s) | 572 |
| HpyCH4IV | ACGT | 3 cut(s) | 96, 363, 583 |
| HpyCH4V | TGCA | 5 cut(s) | 281, 320, 563, 668, 731 |
| HpyF3I | CTNAG | 2 cut(s) | 423, 486 |
| HpySE526I | ACGT | 3 cut(s) | 96, 363, 583 |
| Hsp92I | GRCGYC | 4 cut(s) | 354, 684, 696, 714 |
| Hsp92II | CATG | 7 cut(s) | 16, 344, 361, 620, 683, 691, 707 |
| HspAI | GCGC | 4 cut(s) | 23, 354, 453, 714 |
| KasI | GGCGCC | 2 cut(s) | 353, 713 |
| Kpn2I | TCCGGA | 1 cut(s) | 433 |
| LmnI | GCTCC | 3 cut(s) | 30, 475, 605 |
| Lsp1109I | GCAGC | 3 cut(s) | 94, 610, 715 |
| LweI | GCATC | 2 cut(s) | 336, 715 |
| MaeI | CTAG | 2 cut(s) | 408, 657 |
| MaeII | ACGT | 3 cut(s) | 96, 363, 583 |
| MaeIII | GTNAC | 1 cut(s) | 101 |
| MboII | GAAGA | 2 cut(s) | 62, 265 |
| MhlI | GDGCHC | 3 cut(s) | 348, 565, 635 |
| MluCI | AATT | 2 cut(s) | 298, 499 |
| Mly113I | GGCGCC | 2 cut(s) | 354, 714 |
| MlyI | GAGTC | 3 cut(s) | 98, 250, 446 |
| MmeI | TCCRAC | 1 cut(s) | 636 |
| MnlI | CCTC | 9 cut(s) | 40, 152, 458, 529, 569, 593, 619, 637, 649 |
| MroI | TCCGGA | 1 cut(s) | 433 |
| MslI | CAYNNNNRTG | 3 cut(s) | 15, 705, 708 |
| MspI | CCGG | 1 cut(s) | 434 |
| MspR9I | CCNGG | 1 cut(s) | 720 |
| MvaI | CCWGG | 1 cut(s) | 720 |
| MvnI | CGCG | 2 cut(s) | 23, 453 |
| NarI | GGCGCC | 2 cut(s) | 354, 714 |
| NcoI | CCATGG | 2 cut(s) | 616, 687 |
| NdeI | CATATG | 1 cut(s) | 520 |
| NlaIII | CATG | 7 cut(s) | 16, 344, 361, 620, 683, 691, 707 |
| NlaIV | GGNNCC | 3 cut(s) | 355, 607, 715 |
| NmeAIII | GCCGAG | 1 cut(s) | 575 |
| NmuCI | GTSAC | 1 cut(s) | 101 |
| NspV | TTCGAA | 1 cut(s) | 748 |
| PagI | TCATGA | 1 cut(s) | 340 |
| PcsI | WCGNNNNNNNCGW | 1 cut(s) | 475 |
| PkrI | GCNGC | 3 cut(s) | 84, 625, 730 |
| PleI | GAGTC | 3 cut(s) | 98, 250, 445 |
| PluTI | GGCGCC | 2 cut(s) | 357, 717 |
| PpsI | GAGTC | 3 cut(s) | 98, 250, 445 |
| PsiI | TTATAA | 1 cut(s) | 177 |
| Psp124BI | GAGCTC | 1 cut(s) | 348 |
| Psp1406I | AACGTT | 1 cut(s) | 96 |
| Psp6I | CCWGG | 1 cut(s) | 718 |
| PspGI | CCWGG | 1 cut(s) | 718 |
| PspN4I | GGNNCC | 3 cut(s) | 355, 607, 715 |
| PspPI | GGNCC | 1 cut(s) | 515 |
| RseI | CAYNNNNRTG | 3 cut(s) | 15, 705, 708 |
| SacI | GAGCTC | 1 cut(s) | 348 |
| SatI | GCNGC | 3 cut(s) | 83, 624, 729 |
| Sau96I | GGNCC | 1 cut(s) | 515 |
| SchI | GAGTC | 3 cut(s) | 98, 250, 446 |
| ScrFI | CCNGG | 1 cut(s) | 720 |
| SduI | GDGCHC | 3 cut(s) | 348, 565, 635 |
| SfaNI | GCATC | 2 cut(s) | 336, 715 |
| SfcI | CTRYAG | 1 cut(s) | 445 |
| SfoI | GGCGCC | 2 cut(s) | 355, 715 |
| SfuI | TTCGAA | 1 cut(s) | 748 |
| SinI | GGWCC | 1 cut(s) | 515 |
| SmiMI | CAYNNNNRTG | 3 cut(s) | 15, 705, 708 |
| SmlI | CTYRAG | 1 cut(s) | 77 |
| SmoI | CTYRAG | 1 cut(s) | 77 |
| Sse9I | AATT | 2 cut(s) | 298, 499 |
| SsiI | CCGC | 2 cut(s) | 145, 603 |
| SspDI | GGCGCC | 2 cut(s) | 353, 713 |
| SspMI | CTAG | 2 cut(s) | 408, 657 |
| SstI | GAGCTC | 1 cut(s) | 348 |
| StyD4I | CCNGG | 1 cut(s) | 718 |
| StyI | CCWWGG | 3 cut(s) | 616, 656, 687 |
| TaaI | ACNGT | 1 cut(s) | 572 |
| TaiI | ACGT | 3 cut(s) | 99, 366, 586 |
| TaqI | TCGA | 1 cut(s) | 748 |
| TasI | AATT | 2 cut(s) | 298, 499 |
| TscAI | CASTG | 2 cut(s) | 577, 640 |
| TseFI | GTSAC | 1 cut(s) | 101 |
| TseI | GCWGC | 3 cut(s) | 82, 623, 728 |
| Tsp45I | GTSAC | 1 cut(s) | 101 |
| TspDTI | ATGAA | 4 cut(s) | 29, 48, 329, 374 |
| TspGWI | ACGGA | 2 cut(s) | 580, 631 |
| TspRI | CASTG | 2 cut(s) | 577, 640 |
| VneI | GTGCAC | 1 cut(s) | 561 |
| VpaK11BI | GGWCC | 1 cut(s) | 515 |
| XcmI | CCANNNNNNNNNTGG | 3 cut(s) | 63, 659, 707 |
| XmaJI | CCTAGG | 1 cut(s) | 656 |
| XspI | CTAG | 2 cut(s) | 408, 657 |