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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AanI | TTATAA | 1 cut(s) | 351 |
| AarI | CACCTGC | 2 cut(s) | 34, 137 |
| Acc36I | ACCTGC | 2 cut(s) | 34, 137 |
| AccB1I | GGYRCC | 1 cut(s) | 527 |
| AccII | CGCG | 2 cut(s) | 290, 627 |
| AccIII | TCCGGA | 1 cut(s) | 607 |
| AciI | CCGC | 3 cut(s) | 67, 132, 319 |
| AcsI | RAATTY | 1 cut(s) | 72 |
| AcvI | CACGTG | 1 cut(s) | 52 |
| AcyI | GRCGYC | 2 cut(s) | 102, 528 |
| AfiI | CCNNNNNNNGG | 2 cut(s) | 170, 638 |
| AgsI | TTSAA | 4 cut(s) | 239, 296, 334, 468 |
| AjiI | CACGTC | 1 cut(s) | 121 |
| AloI | GAACNNNNNNTCC | 2 cut(s) | 197, 229 |
| AluBI | AGCT | 6 cut(s) | 185, 227, 251, 362, 520, 542 |
| AluI | AGCT | 6 cut(s) | 185, 227, 251, 362, 520, 542 |
| Alw21I | GWGCWC | 1 cut(s) | 213 |
| Alw26I | GTCTC | 2 cut(s) | 381, 454 |
| AlwNI | CAGNNNCTG | 1 cut(s) | 129 |
| Aor13HI | TCCGGA | 1 cut(s) | 607 |
| ApeKI | GCWGC | 3 cut(s) | 6, 29, 32 |
| ApoI | RAATTY | 1 cut(s) | 72 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 363 |
| AspLEI | GCGC | 3 cut(s) | 292, 530, 629 |
| BanI | GGYRCC | 1 cut(s) | 527 |
| BanII | GRGCYC | 1 cut(s) | 49 |
| BauI | CACGAG | 1 cut(s) | 505 |
| BbrPI | CACGTG | 1 cut(s) | 52 |
| BbsI | GAAGAC | 1 cut(s) | 434 |
| Bbv12I | GWGCWC | 1 cut(s) | 213 |
| BbvI | GCAGC | 3 cut(s) | 16, 18, 44 |
| BccI | CCATC | 3 cut(s) | 164, 266, 376 |
| BcoDI | GTCTC | 2 cut(s) | 381, 454 |
| BfaI | CTAG | 2 cut(s) | 198, 582 |
| BfmI | CTRYAG | 2 cut(s) | 30, 619 |
| BfoI | RGCGCY | 1 cut(s) | 531 |
| BfuAI | ACCTGC | 2 cut(s) | 34, 137 |
| BisI | GCNGC | 4 cut(s) | 7, 30, 33, 67 |
| BlsI | GCNGC | 4 cut(s) | 8, 31, 34, 68 |
| BmgBI | CACGTC | 1 cut(s) | 121 |
| BmiI | GGNNCC | 1 cut(s) | 529 |
| BmsI | GCATC | 2 cut(s) | 64, 330 |
| BpiI | GAAGAC | 1 cut(s) | 434 |
| BsaAI | YACGTR | 1 cut(s) | 52 |
| BsaBI | GATNNNNATC | 1 cut(s) | 419 |
| BsaHI | GRCGYC | 2 cut(s) | 102, 528 |
| BsaJI | CCNNGG | 2 cut(s) | 588, 633 |
| BsaWI | WCCGGW | 1 cut(s) | 607 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 197, 227 |
| Bsc4I | CCNNNNNNNGG | 2 cut(s) | 170, 638 |
| Bse118I | RCCGGY | 1 cut(s) | 163 |
| Bse1I | ACTGG | 2 cut(s) | 106, 154 |
| Bse8I | GATNNNNATC | 1 cut(s) | 419 |
| BseAI | TCCGGA | 1 cut(s) | 607 |
| BseDI | CCNNGG | 2 cut(s) | 588, 633 |
| BseJI | GATNNNNATC | 1 cut(s) | 419 |
| BseLI | CCNNNNNNNGG | 2 cut(s) | 170, 638 |
| BseNI | ACTGG | 2 cut(s) | 106, 154 |
| BseXI | GCAGC | 3 cut(s) | 16, 18, 44 |
| BsgI | GTGCAG | 1 cut(s) | 25 |
| Bsh1236I | CGCG | 2 cut(s) | 290, 627 |
| BshNI | GGYRCC | 1 cut(s) | 527 |
| BsiHKAI | GWGCWC | 1 cut(s) | 213 |
| BsiSI | CCGG | 2 cut(s) | 164, 608 |
| BslI | CCNNNNNNNGG | 2 cut(s) | 170, 638 |
| BsmAI | GTCTC | 2 cut(s) | 381, 454 |
| BsmBI | CGTCTC | 1 cut(s) | 454 |
| Bsp1286I | GDGCHC | 2 cut(s) | 49, 213 |
| Bsp13I | TCCGGA | 1 cut(s) | 607 |
| Bsp143I | GATC | 1 cut(s) | 420 |
| BspACI | CCGC | 3 cut(s) | 67, 132, 319 |
| BspEI | TCCGGA | 1 cut(s) | 607 |
| BspFNI | CGCG | 2 cut(s) | 290, 627 |
| BspHI | TCATGA | 2 cut(s) | 267, 514 |
| BspLI | GGNNCC | 1 cut(s) | 529 |
| BspMAI | CTGCAG | 1 cut(s) | 34 |
| BspMI | ACCTGC | 2 cut(s) | 34, 137 |
| BspQI | GCTCTTC | 1 cut(s) | 369 |
| BspT107I | GGYRCC | 1 cut(s) | 527 |
| BsrFI | RCCGGY | 1 cut(s) | 163 |
| BsrI | ACTGG | 2 cut(s) | 106, 154 |
| BssAI | RCCGGY | 1 cut(s) | 163 |
| BssECI | CCNNGG | 2 cut(s) | 588, 633 |
| BssMI | GATC | 1 cut(s) | 420 |
| BssNI | GRCGYC | 2 cut(s) | 102, 528 |
| BssSI | CACGAG | 1 cut(s) | 505 |
| BssT1I | CCWWGG | 1 cut(s) | 633 |
| Bst2BI | CACGAG | 1 cut(s) | 505 |
| Bst4CI | ACNGT | 2 cut(s) | 15, 41 |
| Bst6I | CTCTTC | 1 cut(s) | 369 |
| BstACI | GRCGYC | 2 cut(s) | 102, 528 |
| BstBAI | YACGTR | 1 cut(s) | 52 |
| BstC8I | GCNNGC | 3 cut(s) | 100, 115, 165 |
| BstDEI | CTNAG | 1 cut(s) | 597 |
| BstDSI | CCRYGG | 1 cut(s) | 588 |
| BstFNI | CGCG | 2 cut(s) | 290, 627 |
| BstH2I | RGCGCY | 1 cut(s) | 531 |
| BstHHI | GCGC | 3 cut(s) | 292, 530, 629 |
| BstKTI | GATC | 1 cut(s) | 423 |
| BstMAI | GTCTC | 2 cut(s) | 381, 454 |
| BstMBI | GATC | 1 cut(s) | 420 |
| BstMWI | GCNNNNNNNGC | 4 cut(s) | 87, 123, 239, 248 |
| BstSFI | CTRYAG | 2 cut(s) | 30, 619 |
| BstUI | CGCG | 2 cut(s) | 290, 627 |
| BstV1I | GCAGC | 3 cut(s) | 16, 18, 44 |
| BstV2I | GAAGAC | 1 cut(s) | 434 |
| BtgI | CCRYGG | 1 cut(s) | 588 |
| BtrI | CACGTC | 1 cut(s) | 121 |
| BveI | ACCTGC | 2 cut(s) | 34, 137 |
| Cac8I | GCNNGC | 3 cut(s) | 100, 115, 165 |
| CaiI | CAGNNNCTG | 1 cut(s) | 129 |
| CciI | TCATGA | 2 cut(s) | 267, 514 |
| CfoI | GCGC | 3 cut(s) | 292, 530, 629 |
| Cfr10I | RCCGGY | 1 cut(s) | 163 |
| CseI | GACGC | 3 cut(s) | 79, 91, 296 |
| CviAII | CATG | 4 cut(s) | 268, 280, 515, 532 |
| DdeI | CTNAG | 1 cut(s) | 597 |
| DinI | GGCGCC | 1 cut(s) | 529 |
| DpnI | GATC | 1 cut(s) | 422 |
| DpnII | GATC | 1 cut(s) | 420 |
| Eam1104I | CTCTTC | 1 cut(s) | 369 |
| EarI | CTCTTC | 1 cut(s) | 369 |
| Eco130I | CCWWGG | 1 cut(s) | 633 |
| Eco24I | GRGCYC | 1 cut(s) | 49 |
| Eco72I | CACGTG | 1 cut(s) | 52 |
| EcoRI | GAATTC | 1 cut(s) | 72 |
| EcoT14I | CCWWGG | 1 cut(s) | 633 |
| EcoT38I | GRGCYC | 1 cut(s) | 49 |
| EgeI | GGCGCC | 1 cut(s) | 529 |
| EheI | GGCGCC | 1 cut(s) | 529 |
| ErhI | CCWWGG | 1 cut(s) | 633 |
| Esp3I | CGTCTC | 1 cut(s) | 454 |
| FaeI | CATG | 4 cut(s) | 271, 283, 518, 535 |
| FatI | CATG | 4 cut(s) | 267, 279, 514, 531 |
| Fnu4HI | GCNGC | 4 cut(s) | 7, 30, 33, 67 |
| FriOI | GRGCYC | 1 cut(s) | 49 |
| Fsp4HI | GCNGC | 4 cut(s) | 7, 30, 33, 67 |
| FspBI | CTAG | 2 cut(s) | 198, 582 |
| GlaI | GCGC | 3 cut(s) | 291, 529, 628 |
| GluI | GCNGC | 4 cut(s) | 7, 30, 33, 67 |
| HaeII | RGCGCY | 1 cut(s) | 531 |
| HapII | CCGG | 2 cut(s) | 164, 608 |
| HgaI | GACGC | 3 cut(s) | 79, 91, 296 |
| HhaI | GCGC | 3 cut(s) | 292, 530, 629 |
| Hin1I | GRCGYC | 2 cut(s) | 102, 528 |
| Hin1II | CATG | 4 cut(s) | 271, 283, 518, 535 |
| Hin6I | GCGC | 3 cut(s) | 290, 528, 627 |
| HinP1I | GCGC | 3 cut(s) | 290, 528, 627 |
| HincII | GTYRAC | 2 cut(s) | 137, 148 |
| HindII | GTYRAC | 2 cut(s) | 137, 148 |
| HinfI | GANTC | 2 cut(s) | 430, 611 |
| HpaII | CCGG | 2 cut(s) | 164, 608 |
| Hpy166II | GTNNAC | 3 cut(s) | 94, 137, 148 |
| Hpy188I | TCNGA | 4 cut(s) | 204, 358, 381, 480 |
| Hpy188III | TCNNGA | 6 cut(s) | 179, 268, 424, 505, 515, 608 |
| Hpy8I | GTNNAC | 3 cut(s) | 94, 137, 148 |
| HpyAV | CCTTC | 1 cut(s) | 451 |
| HpyCH4III | ACNGT | 2 cut(s) | 15, 41 |
| HpyCH4IV | ACGT | 6 cut(s) | 51, 120, 150, 207, 499, 537 |
| HpyCH4V | TGCA | 3 cut(s) | 6, 32, 55 |
| HpyF10VI | GCNNNNNNNGC | 4 cut(s) | 87, 123, 239, 248 |
| HpyF3I | CTNAG | 1 cut(s) | 597 |
| HpySE526I | ACGT | 6 cut(s) | 51, 120, 150, 207, 499, 537 |
| Hsp92I | GRCGYC | 2 cut(s) | 102, 528 |
| Hsp92II | CATG | 4 cut(s) | 271, 283, 518, 535 |
| HspAI | GCGC | 3 cut(s) | 290, 528, 627 |
| KasI | GGCGCC | 1 cut(s) | 527 |
| Kpn2I | TCCGGA | 1 cut(s) | 607 |
| KroI | GCCGGC | 1 cut(s) | 163 |
| KroNI | GCCGGC | 1 cut(s) | 165 |
| Kzo9I | GATC | 1 cut(s) | 420 |
| LguI | GCTCTTC | 1 cut(s) | 369 |
| Lsp1109I | GCAGC | 3 cut(s) | 16, 18, 44 |
| LweI | GCATC | 2 cut(s) | 64, 330 |
| MaeI | CTAG | 2 cut(s) | 198, 582 |
| MaeII | ACGT | 6 cut(s) | 51, 120, 150, 207, 499, 537 |
| MaeIII | GTNAC | 1 cut(s) | 392 |
| MalI | GATC | 1 cut(s) | 422 |
| MboI | GATC | 1 cut(s) | 420 |
| MboII | GAAGA | 3 cut(s) | 356, 439, 580 |
| MhlI | GDGCHC | 2 cut(s) | 49, 213 |
| MluCI | AATT | 2 cut(s) | 72, 472 |
| Mly113I | GGCGCC | 1 cut(s) | 528 |
| MlyI | GAGTC | 2 cut(s) | 424, 620 |
| MnlI | CCTC | 4 cut(s) | 150, 326, 501, 632 |
| MroI | TCCGGA | 1 cut(s) | 607 |
| MroNI | GCCGGC | 1 cut(s) | 163 |
| MroXI | GAANNNNTTC | 1 cut(s) | 363 |
| MslI | CAYNNNNRTG | 3 cut(s) | 266, 282, 563 |
| MspI | CCGG | 2 cut(s) | 164, 608 |
| MvnI | CGCG | 2 cut(s) | 290, 627 |
| MwoI | GCNNNNNNNGC | 4 cut(s) | 87, 123, 239, 248 |
| NaeI | GCCGGC | 1 cut(s) | 165 |
| NarI | GGCGCC | 1 cut(s) | 528 |
| NdeII | GATC | 1 cut(s) | 420 |
| NgoMIV | GCCGGC | 1 cut(s) | 163 |
| NlaIII | CATG | 4 cut(s) | 271, 283, 518, 535 |
| NlaIV | GGNNCC | 1 cut(s) | 529 |
| NmuCI | GTSAC | 1 cut(s) | 392 |
| PagI | TCATGA | 2 cut(s) | 267, 514 |
| PaqCI | CACCTGC | 2 cut(s) | 34, 137 |
| PciSI | GCTCTTC | 1 cut(s) | 369 |
| PdiI | GCCGGC | 1 cut(s) | 165 |
| PdmI | GAANNNNTTC | 1 cut(s) | 363 |
| PkrI | GCNGC | 4 cut(s) | 8, 31, 34, 68 |
| PleI | GAGTC | 2 cut(s) | 424, 619 |
| PluTI | GGCGCC | 1 cut(s) | 531 |
| PmaCI | CACGTG | 1 cut(s) | 52 |
| PmlI | CACGTG | 1 cut(s) | 52 |
| PpsI | GAGTC | 2 cut(s) | 424, 619 |
| Ppu21I | YACGTR | 1 cut(s) | 52 |
| PsiI | TTATAA | 1 cut(s) | 351 |
| PspCI | CACGTG | 1 cut(s) | 52 |
| PspN4I | GGNNCC | 1 cut(s) | 529 |
| PstI | CTGCAG | 1 cut(s) | 34 |
| PstNI | CAGNNNCTG | 1 cut(s) | 129 |
| RseI | CAYNNNNRTG | 3 cut(s) | 266, 282, 563 |
| SapI | GCTCTTC | 1 cut(s) | 369 |
| SatI | GCNGC | 4 cut(s) | 7, 30, 33, 67 |
| Sau3AI | GATC | 1 cut(s) | 420 |
| SchI | GAGTC | 2 cut(s) | 424, 620 |
| SduI | GDGCHC | 2 cut(s) | 49, 213 |
| SfaNI | GCATC | 2 cut(s) | 64, 330 |
| SfcI | CTRYAG | 2 cut(s) | 30, 619 |
| SfoI | GGCGCC | 1 cut(s) | 529 |
| SmiMI | CAYNNNNRTG | 3 cut(s) | 266, 282, 563 |
| Sse9I | AATT | 2 cut(s) | 72, 472 |
| SsiI | CCGC | 3 cut(s) | 67, 132, 319 |
| SspDI | GGCGCC | 1 cut(s) | 527 |
| SspMI | CTAG | 2 cut(s) | 198, 582 |
| StyI | CCWWGG | 1 cut(s) | 633 |
| TaaI | ACNGT | 2 cut(s) | 15, 41 |
| TaiI | ACGT | 6 cut(s) | 54, 123, 153, 210, 502, 540 |
| TaqI | TCGA | 2 cut(s) | 43, 423 |
| TasI | AATT | 2 cut(s) | 72, 472 |
| TauI | GCSGC | 1 cut(s) | 69 |
| TseFI | GTSAC | 1 cut(s) | 392 |
| TseI | GCWGC | 3 cut(s) | 6, 29, 32 |
| Tsp45I | GTSAC | 1 cut(s) | 392 |
| TspDTI | ATGAA | 3 cut(s) | 296, 503, 548 |
| XapI | RAATTY | 1 cut(s) | 72 |
| XmnI | GAANNNNTTC | 1 cut(s) | 363 |
| XspI | CTAG | 2 cut(s) | 198, 582 |