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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccB1I | GGYRCC | 4 cut(s) | 429, 587, 662, 743 |
| AccIII | TCCGGA | 1 cut(s) | 394 |
| AciI | CCGC | 1 cut(s) | 666 |
| AclWI | GGATC | 2 cut(s) | 296, 366 |
| AcoI | YGGCCR | 1 cut(s) | 574 |
| AcsI | RAATTY | 1 cut(s) | 811 |
| AcyI | GRCGYC | 1 cut(s) | 430 |
| AfiI | CCNNNNNNNGG | 1 cut(s) | 688 |
| AflII | CTTAAG | 1 cut(s) | 419 |
| AgsI | TTSAA | 5 cut(s) | 121, 173, 625, 779, 791 |
| AhdI | GACNNNNNGTC | 1 cut(s) | 29 |
| AjnI | CCWGG | 1 cut(s) | 748 |
| AluBI | AGCT | 3 cut(s) | 307, 317, 856 |
| AluI | AGCT | 3 cut(s) | 307, 317, 856 |
| Alw26I | GTCTC | 2 cut(s) | 37, 241 |
| AlwI | GGATC | 2 cut(s) | 296, 366 |
| Ama87I | CYCGRG | 1 cut(s) | 38 |
| Aor13HI | TCCGGA | 1 cut(s) | 394 |
| AoxI | GGCC | 2 cut(s) | 574, 800 |
| ApeKI | GCWGC | 1 cut(s) | 692 |
| ApoI | RAATTY | 1 cut(s) | 811 |
| AspA2I | CCTAGG | 1 cut(s) | 686 |
| AspLEI | GCGC | 1 cut(s) | 432 |
| AsuHPI | GGTGA | 2 cut(s) | 749, 757 |
| AvaI | CYCGRG | 1 cut(s) | 38 |
| AvrII | CCTAGG | 1 cut(s) | 686 |
| AxyI | CCTNAGG | 1 cut(s) | 452 |
| BalI | TGGCCA | 1 cut(s) | 576 |
| BanI | GGYRCC | 4 cut(s) | 429, 587, 662, 743 |
| BanII | GRGCYC | 1 cut(s) | 418 |
| BbsI | GAAGAC | 2 cut(s) | 28, 221 |
| BbvI | GCAGC | 1 cut(s) | 679 |
| BccI | CCATC | 7 cut(s) | 87, 241, 615, 653, 716, 734, 738 |
| BceAI | ACGGC | 1 cut(s) | 680 |
| BciT130I | CCWGG | 1 cut(s) | 750 |
| BciVI | GTATCC | 1 cut(s) | 451 |
| BcoDI | GTCTC | 2 cut(s) | 37, 241 |
| BfaI | CTAG | 2 cut(s) | 83, 687 |
| BfoI | RGCGCY | 1 cut(s) | 433 |
| BfrI | CTTAAG | 1 cut(s) | 419 |
| BfuI | GTATCC | 1 cut(s) | 451 |
| BisI | GCNGC | 1 cut(s) | 693 |
| BlnI | CCTAGG | 1 cut(s) | 686 |
| BlsI | GCNGC | 1 cut(s) | 694 |
| Bme1390I | CCNGG | 1 cut(s) | 750 |
| BmeRI | GACNNNNNGTC | 1 cut(s) | 29 |
| BmeT110I | CYCGRG | 1 cut(s) | 38 |
| BmiI | GGNNCC | 5 cut(s) | 431, 530, 589, 664, 745 |
| BmrFI | CCNGG | 1 cut(s) | 750 |
| BmsI | GCATC | 2 cut(s) | 703, 745 |
| BpiI | GAAGAC | 2 cut(s) | 28, 221 |
| Bpu10I | CCTNAGC | 1 cut(s) | 797 |
| BsaHI | GRCGYC | 1 cut(s) | 430 |
| BsaI | GGTCTC | 1 cut(s) | 37 |
| BsaJI | CCNNGG | 3 cut(s) | 686, 717, 748 |
| BsaWI | WCCGGW | 1 cut(s) | 394 |
| Bsc4I | CCNNNNNNNGG | 1 cut(s) | 688 |
| Bse21I | CCTNAGG | 1 cut(s) | 452 |
| BseAI | TCCGGA | 1 cut(s) | 394 |
| BseBI | CCWGG | 1 cut(s) | 750 |
| BseDI | CCNNGG | 3 cut(s) | 686, 717, 748 |
| BseGI | GGATG | 3 cut(s) | 345, 473, 727 |
| BseLI | CCNNNNNNNGG | 1 cut(s) | 688 |
| BseMII | CTCAG | 2 cut(s) | 639, 811 |
| BseXI | GCAGC | 1 cut(s) | 679 |
| BshFI | GGCC | 2 cut(s) | 576, 802 |
| BshNI | GGYRCC | 4 cut(s) | 429, 587, 662, 743 |
| BsiHKCI | CYCGRG | 1 cut(s) | 38 |
| BsiSI | CCGG | 1 cut(s) | 395 |
| BslFI | GGGAC | 1 cut(s) | 686 |
| BslI | CCNNNNNNNGG | 1 cut(s) | 688 |
| BsmAI | GTCTC | 2 cut(s) | 37, 241 |
| BsmBI | CGTCTC | 1 cut(s) | 241 |
| BsmFI | GGGAC | 1 cut(s) | 686 |
| BsnI | GGCC | 2 cut(s) | 576, 802 |
| Bso31I | GGTCTC | 1 cut(s) | 37 |
| BsoBI | CYCGRG | 1 cut(s) | 38 |
| Bsp1286I | GDGCHC | 1 cut(s) | 418 |
| Bsp13I | TCCGGA | 1 cut(s) | 394 |
| Bsp143I | GATC | 3 cut(s) | 189, 288, 371 |
| Bsp19I | CCATGG | 1 cut(s) | 717 |
| BspACI | CCGC | 1 cut(s) | 666 |
| BspANI | GGCC | 2 cut(s) | 576, 802 |
| BspCNI | CTCAG | 2 cut(s) | 640, 810 |
| BspEI | TCCGGA | 1 cut(s) | 394 |
| BspHI | TCATGA | 1 cut(s) | 301 |
| BspLI | GGNNCC | 5 cut(s) | 431, 530, 589, 664, 745 |
| BspPI | GGATC | 2 cut(s) | 296, 366 |
| BspT107I | GGYRCC | 4 cut(s) | 429, 587, 662, 743 |
| BspTI | CTTAAG | 1 cut(s) | 419 |
| BspTNI | GGTCTC | 1 cut(s) | 37 |
| BssECI | CCNNGG | 3 cut(s) | 686, 717, 748 |
| BssMI | GATC | 3 cut(s) | 189, 288, 371 |
| BssNI | GRCGYC | 1 cut(s) | 430 |
| BssT1I | CCWWGG | 2 cut(s) | 686, 717 |
| Bst2UI | CCWGG | 1 cut(s) | 750 |
| Bst4CI | ACNGT | 1 cut(s) | 27 |
| Bst6I | CTCTTC | 2 cut(s) | 529, 649 |
| BstACI | GRCGYC | 1 cut(s) | 430 |
| BstAFI | CTTAAG | 1 cut(s) | 419 |
| BstDEI | CTNAG | 6 cut(s) | 255, 452, 600, 648, 797, 864 |
| BstDSI | CCRYGG | 1 cut(s) | 717 |
| BstF5I | GGATG | 3 cut(s) | 345, 473, 727 |
| BstH2I | RGCGCY | 1 cut(s) | 433 |
| BstHHI | GCGC | 1 cut(s) | 432 |
| BstKTI | GATC | 3 cut(s) | 192, 291, 374 |
| BstMAI | GTCTC | 2 cut(s) | 37, 241 |
| BstMBI | GATC | 3 cut(s) | 189, 288, 371 |
| BstMWI | GCNNNNNNNGC | 3 cut(s) | 436, 626, 832 |
| BstNI | CCWGG | 1 cut(s) | 750 |
| BstSCI | CCNGG | 1 cut(s) | 748 |
| BstV1I | GCAGC | 1 cut(s) | 679 |
| BstV2I | GAAGAC | 2 cut(s) | 28, 221 |
| BstX2I | RGATCY | 1 cut(s) | 371 |
| BstXI | CCANNNNNNTGG | 1 cut(s) | 584 |
| BstYI | RGATCY | 1 cut(s) | 371 |
| Bsu36I | CCTNAGG | 1 cut(s) | 452 |
| BsuI | GTATCC | 1 cut(s) | 451 |
| BsuRI | GGCC | 2 cut(s) | 576, 802 |
| BtgI | CCRYGG | 1 cut(s) | 717 |
| BtgZI | GCGATG | 1 cut(s) | 215 |
| BtsCI | GGATG | 3 cut(s) | 345, 473, 727 |
| CciI | TCATGA | 1 cut(s) | 301 |
| CfoI | GCGC | 1 cut(s) | 432 |
| CseI | GACGC | 1 cut(s) | 626 |
| CspCI | CAANNNNNGTGG | 2 cut(s) | 553, 588 |
| CviAII | CATG | 6 cut(s) | 302, 338, 578, 710, 718, 734 |
| DdeI | CTNAG | 6 cut(s) | 255, 452, 600, 648, 797, 864 |
| DinI | GGCGCC | 1 cut(s) | 431 |
| DpnI | GATC | 3 cut(s) | 191, 290, 373 |
| DpnII | GATC | 3 cut(s) | 189, 288, 371 |
| DriI | GACNNNNNGTC | 1 cut(s) | 29 |
| EaeI | YGGCCR | 1 cut(s) | 574 |
| Eam1104I | CTCTTC | 2 cut(s) | 529, 649 |
| Eam1105I | GACNNNNNGTC | 1 cut(s) | 29 |
| EarI | CTCTTC | 2 cut(s) | 529, 649 |
| Eco130I | CCWWGG | 2 cut(s) | 686, 717 |
| Eco147I | AGGCCT | 1 cut(s) | 802 |
| Eco24I | GRGCYC | 1 cut(s) | 418 |
| Eco31I | GGTCTC | 1 cut(s) | 37 |
| Eco81I | CCTNAGG | 1 cut(s) | 452 |
| Eco88I | CYCGRG | 1 cut(s) | 38 |
| EcoRII | CCWGG | 1 cut(s) | 748 |
| EcoT14I | CCWWGG | 2 cut(s) | 686, 717 |
| EcoT38I | GRGCYC | 1 cut(s) | 418 |
| EgeI | GGCGCC | 1 cut(s) | 431 |
| EheI | GGCGCC | 1 cut(s) | 431 |
| ErhI | CCWWGG | 2 cut(s) | 686, 717 |
| Esp3I | CGTCTC | 1 cut(s) | 241 |
| FaeI | CATG | 6 cut(s) | 305, 341, 581, 713, 721, 737 |
| FaqI | GGGAC | 1 cut(s) | 686 |
| FatI | CATG | 6 cut(s) | 301, 337, 577, 709, 717, 733 |
| Fnu4HI | GCNGC | 1 cut(s) | 693 |
| FokI | GGATG | 3 cut(s) | 332, 480, 734 |
| FriOI | GRGCYC | 1 cut(s) | 418 |
| Fsp4HI | GCNGC | 1 cut(s) | 693 |
| FspBI | CTAG | 2 cut(s) | 83, 687 |
| GlaI | GCGC | 1 cut(s) | 431 |
| GluI | GCNGC | 1 cut(s) | 693 |
| HaeII | RGCGCY | 1 cut(s) | 433 |
| HaeIII | GGCC | 2 cut(s) | 576, 802 |
| HapII | CCGG | 1 cut(s) | 395 |
| HgaI | GACGC | 1 cut(s) | 626 |
| HhaI | GCGC | 1 cut(s) | 432 |
| Hin1I | GRCGYC | 1 cut(s) | 430 |
| Hin1II | CATG | 6 cut(s) | 305, 341, 581, 713, 721, 737 |
| Hin6I | GCGC | 1 cut(s) | 430 |
| HinP1I | GCGC | 1 cut(s) | 430 |
| HincII | GTYRAC | 1 cut(s) | 542 |
| HindII | GTYRAC | 1 cut(s) | 542 |
| HinfI | GANTC | 5 cut(s) | 65, 217, 398, 644, 726 |
| HpaII | CCGG | 1 cut(s) | 395 |
| HphI | GGTGA | 2 cut(s) | 749, 757 |
| Hpy166II | GTNNAC | 2 cut(s) | 542, 676 |
| Hpy188I | TCNGA | 2 cut(s) | 145, 649 |
| Hpy188III | TCNNGA | 5 cut(s) | 77, 131, 302, 395, 465 |
| Hpy8I | GTNNAC | 2 cut(s) | 542, 676 |
| HpyAV | CCTTC | 3 cut(s) | 238, 420, 494 |
| HpyCH4III | ACNGT | 1 cut(s) | 27 |
| HpyCH4IV | ACGT | 1 cut(s) | 544 |
| HpyCH4V | TGCA | 2 cut(s) | 156, 242 |
| HpyF10VI | GCNNNNNNNGC | 3 cut(s) | 436, 626, 832 |
| HpyF3I | CTNAG | 6 cut(s) | 255, 452, 600, 648, 797, 864 |
| HpySE526I | ACGT | 1 cut(s) | 544 |
| Hsp92I | GRCGYC | 1 cut(s) | 430 |
| Hsp92II | CATG | 6 cut(s) | 305, 341, 581, 713, 721, 737 |
| HspAI | GCGC | 1 cut(s) | 430 |
| KasI | GGCGCC | 1 cut(s) | 429 |
| Kpn2I | TCCGGA | 1 cut(s) | 394 |
| Kzo9I | GATC | 3 cut(s) | 189, 288, 371 |
| LmnI | GCTCC | 1 cut(s) | 314 |
| Lsp1109I | GCAGC | 1 cut(s) | 679 |
| LweI | GCATC | 2 cut(s) | 703, 745 |
| MaeI | CTAG | 2 cut(s) | 83, 687 |
| MaeII | ACGT | 1 cut(s) | 544 |
| MaeIII | GTNAC | 3 cut(s) | 62, 274, 503 |
| MalI | GATC | 3 cut(s) | 191, 290, 373 |
| MboI | GATC | 3 cut(s) | 189, 288, 371 |
| MboII | GAAGA | 5 cut(s) | 20, 33, 226, 546, 666 |
| MflI | RGATCY | 1 cut(s) | 371 |
| MhlI | GDGCHC | 1 cut(s) | 418 |
| MlsI | TGGCCA | 1 cut(s) | 576 |
| MluCI | AATT | 6 cut(s) | 168, 173, 267, 364, 403, 811 |
| MluNI | TGGCCA | 1 cut(s) | 576 |
| Mly113I | GGCGCC | 1 cut(s) | 430 |
| MlyI | GAGTC | 3 cut(s) | 59, 211, 653 |
| MnlI | CCTC | 9 cut(s) | 34, 113, 242, 530, 550, 554, 642, 679, 846 |
| Mox20I | TGGCCA | 1 cut(s) | 576 |
| MroI | TCCGGA | 1 cut(s) | 394 |
| MscI | TGGCCA | 1 cut(s) | 576 |
| MseI | TTAA | 3 cut(s) | 159, 167, 420 |
| MslI | CAYNNNNRTG | 5 cut(s) | 350, 582, 612, 735, 738 |
| Msp20I | TGGCCA | 1 cut(s) | 576 |
| MspCI | CTTAAG | 1 cut(s) | 419 |
| MspI | CCGG | 1 cut(s) | 395 |
| MspR9I | CCNGG | 1 cut(s) | 750 |
| MvaI | CCWGG | 1 cut(s) | 750 |
| MwoI | GCNNNNNNNGC | 3 cut(s) | 436, 626, 832 |
| NarI | GGCGCC | 1 cut(s) | 430 |
| NcoI | CCATGG | 1 cut(s) | 717 |
| NdeII | GATC | 3 cut(s) | 189, 288, 371 |
| NlaIII | CATG | 6 cut(s) | 305, 341, 581, 713, 721, 737 |
| NlaIV | GGNNCC | 5 cut(s) | 431, 530, 589, 664, 745 |
| NmuCI | GTSAC | 1 cut(s) | 62 |
| PaeR7I | CTCGAG | 1 cut(s) | 38 |
| PagI | TCATGA | 1 cut(s) | 301 |
| PceI | AGGCCT | 1 cut(s) | 802 |
| PfeI | GAWTC | 2 cut(s) | 398, 726 |
| PkrI | GCNGC | 1 cut(s) | 694 |
| PleI | GAGTC | 3 cut(s) | 59, 211, 652 |
| PluTI | GGCGCC | 1 cut(s) | 433 |
| PpsI | GAGTC | 3 cut(s) | 59, 211, 652 |
| Psp6I | CCWGG | 1 cut(s) | 748 |
| PspGI | CCWGG | 1 cut(s) | 748 |
| PspN4I | GGNNCC | 5 cut(s) | 431, 530, 589, 664, 745 |
| PspXI | VCTCGAGB | 1 cut(s) | 38 |
| PsuI | RGATCY | 1 cut(s) | 371 |
| RseI | CAYNNNNRTG | 5 cut(s) | 350, 582, 612, 735, 738 |
| SaqAI | TTAA | 3 cut(s) | 159, 167, 420 |
| SatI | GCNGC | 1 cut(s) | 693 |
| Sau3AI | GATC | 3 cut(s) | 189, 288, 371 |
| SchI | GAGTC | 3 cut(s) | 59, 211, 653 |
| ScrFI | CCNGG | 1 cut(s) | 750 |
| SduI | GDGCHC | 1 cut(s) | 418 |
| SfaNI | GCATC | 2 cut(s) | 703, 745 |
| SfoI | GGCGCC | 1 cut(s) | 431 |
| Sfr274I | CTCGAG | 1 cut(s) | 38 |
| SlaI | CTCGAG | 1 cut(s) | 38 |
| SmiMI | CAYNNNNRTG | 5 cut(s) | 350, 582, 612, 735, 738 |
| SmlI | CTYRAG | 2 cut(s) | 38, 419 |
| SmoI | CTYRAG | 2 cut(s) | 38, 419 |
| Sse9I | AATT | 6 cut(s) | 168, 173, 267, 364, 403, 811 |
| SseBI | AGGCCT | 1 cut(s) | 802 |
| SsiI | CCGC | 1 cut(s) | 666 |
| SspDI | GGCGCC | 1 cut(s) | 429 |
| SspMI | CTAG | 2 cut(s) | 83, 687 |
| StuI | AGGCCT | 1 cut(s) | 802 |
| StyD4I | CCNGG | 1 cut(s) | 748 |
| StyI | CCWWGG | 2 cut(s) | 686, 717 |
| TaaI | ACNGT | 1 cut(s) | 27 |
| TaiI | ACGT | 1 cut(s) | 547 |
| TaqI | TCGA | 3 cut(s) | 39, 265, 412 |
| TasI | AATT | 6 cut(s) | 168, 173, 267, 364, 403, 811 |
| TfiI | GAWTC | 2 cut(s) | 398, 726 |
| Tru1I | TTAA | 3 cut(s) | 159, 167, 420 |
| Tru9I | TTAA | 3 cut(s) | 159, 167, 420 |
| TseFI | GTSAC | 1 cut(s) | 62 |
| TseI | GCWGC | 1 cut(s) | 692 |
| Tsp45I | GTSAC | 1 cut(s) | 62 |
| TspDTI | ATGAA | 4 cut(s) | 17, 21, 290, 335 |
| TspGWI | ACGGA | 5 cut(s) | 50, 301, 364, 541, 661 |
| Vha464I | CTTAAG | 1 cut(s) | 419 |
| XapI | RAATTY | 1 cut(s) | 811 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 737 |
| XhoI | CTCGAG | 1 cut(s) | 38 |
| XmaJI | CCTAGG | 1 cut(s) | 686 |
| XspI | CTAG | 2 cut(s) | 83, 687 |