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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| Acc36I | ACCTGC | 1 cut(s) | 104 |
| AciI | CCGC | 3 cut(s) | 30, 406, 688 |
| AclWI | GGATC | 2 cut(s) | 209, 590 |
| AcsI | RAATTY | 2 cut(s) | 259, 768 |
| AcvI | CACGTG | 1 cut(s) | 106 |
| AflIII | ACRYGT | 1 cut(s) | 92 |
| AgsI | TTSAA | 2 cut(s) | 127, 703 |
| AjiI | CACGTC | 1 cut(s) | 463 |
| AjnI | CCWGG | 3 cut(s) | 197, 432, 456 |
| AjuI | GAANNNNNNNTTGG | 2 cut(s) | 615, 647 |
| AluBI | AGCT | 4 cut(s) | 56, 123, 482, 488 |
| AluI | AGCT | 4 cut(s) | 56, 123, 482, 488 |
| Alw21I | GWGCWC | 1 cut(s) | 105 |
| Alw26I | GTCTC | 1 cut(s) | 619 |
| AlwI | GGATC | 2 cut(s) | 209, 590 |
| Ama87I | CYCGRG | 1 cut(s) | 446 |
| AoxI | GGCC | 1 cut(s) | 180 |
| ApoI | RAATTY | 2 cut(s) | 259, 768 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 732 |
| AspS9I | GGNCC | 2 cut(s) | 27, 181 |
| AsuHPI | GGTGA | 2 cut(s) | 31, 110 |
| AvaI | CYCGRG | 1 cut(s) | 446 |
| AvaII | GGWCC | 1 cut(s) | 27 |
| BbrPI | CACGTG | 1 cut(s) | 106 |
| Bbv12I | GWGCWC | 1 cut(s) | 105 |
| BccI | CCATC | 5 cut(s) | 18, 20, 44, 542, 669 |
| BciT130I | CCWGG | 3 cut(s) | 199, 434, 458 |
| BcoDI | GTCTC | 1 cut(s) | 619 |
| BfaI | CTAG | 2 cut(s) | 453, 665 |
| BfuAI | ACCTGC | 1 cut(s) | 104 |
| BlpI | GCTNAGC | 1 cut(s) | 132 |
| Bme1390I | CCNGG | 3 cut(s) | 199, 434, 458 |
| Bme18I | GGWCC | 1 cut(s) | 27 |
| BmeT110I | CYCGRG | 1 cut(s) | 446 |
| BmgBI | CACGTC | 1 cut(s) | 463 |
| BmgT120I | GGNCC | 2 cut(s) | 27, 181 |
| BmiI | GGNNCC | 1 cut(s) | 183 |
| BmrFI | CCNGG | 3 cut(s) | 199, 434, 458 |
| BmsI | GCATC | 2 cut(s) | 421, 515 |
| BpmI | CTGGAG | 1 cut(s) | 554 |
| Bpu1102I | GCTNAGC | 1 cut(s) | 132 |
| BpuEI | CTTGAG | 2 cut(s) | 401, 468 |
| BsaAI | YACGTR | 1 cut(s) | 106 |
| BsaBI | GATNNNNATC | 1 cut(s) | 206 |
| BsaI | GGTCTC | 1 cut(s) | 619 |
| Bse1I | ACTGG | 3 cut(s) | 137, 376, 571 |
| Bse8I | GATNNNNATC | 1 cut(s) | 206 |
| BseBI | CCWGG | 3 cut(s) | 199, 434, 458 |
| BseGI | GGATG | 4 cut(s) | 333, 506, 537, 565 |
| BseJI | GATNNNNATC | 1 cut(s) | 206 |
| BseMII | CTCAG | 2 cut(s) | 146, 268 |
| BseNI | ACTGG | 3 cut(s) | 137, 376, 571 |
| BshFI | GGCC | 1 cut(s) | 182 |
| BsiHKAI | GWGCWC | 1 cut(s) | 105 |
| BsiHKCI | CYCGRG | 1 cut(s) | 446 |
| BslFI | GGGAC | 1 cut(s) | 379 |
| BsmAI | GTCTC | 1 cut(s) | 619 |
| BsmFI | GGGAC | 1 cut(s) | 379 |
| BsmI | GAATGC | 1 cut(s) | 133 |
| BsnI | GGCC | 1 cut(s) | 182 |
| Bso31I | GGTCTC | 1 cut(s) | 619 |
| BsoBI | CYCGRG | 1 cut(s) | 446 |
| Bsp1286I | GDGCHC | 1 cut(s) | 105 |
| Bsp143I | GATC | 3 cut(s) | 168, 201, 595 |
| Bsp1720I | GCTNAGC | 1 cut(s) | 132 |
| BspACI | CCGC | 3 cut(s) | 30, 406, 688 |
| BspANI | GGCC | 1 cut(s) | 182 |
| BspCNI | CTCAG | 2 cut(s) | 145, 267 |
| BspLI | GGNNCC | 1 cut(s) | 183 |
| BspMI | ACCTGC | 1 cut(s) | 104 |
| BspPI | GGATC | 2 cut(s) | 209, 590 |
| BspTNI | GGTCTC | 1 cut(s) | 619 |
| BsrI | ACTGG | 3 cut(s) | 137, 376, 571 |
| BssMI | GATC | 3 cut(s) | 168, 201, 595 |
| Bst2UI | CCWGG | 3 cut(s) | 199, 434, 458 |
| Bst4CI | ACNGT | 1 cut(s) | 472 |
| BstBAI | YACGTR | 1 cut(s) | 106 |
| BstC8I | GCNNGC | 3 cut(s) | 111, 410, 480 |
| BstDEI | CTNAG | 3 cut(s) | 132, 254, 511 |
| BstF5I | GGATG | 4 cut(s) | 333, 506, 537, 565 |
| BstKTI | GATC | 3 cut(s) | 171, 204, 598 |
| BstMAI | GTCTC | 1 cut(s) | 619 |
| BstMBI | GATC | 3 cut(s) | 168, 201, 595 |
| BstMWI | GCNNNNNNNGC | 3 cut(s) | 288, 494, 503 |
| BstNI | CCWGG | 3 cut(s) | 199, 434, 458 |
| BstNSI | RCATGY | 1 cut(s) | 96 |
| BstSCI | CCNGG | 3 cut(s) | 197, 432, 456 |
| BstX2I | RGATCY | 2 cut(s) | 201, 595 |
| BstYI | RGATCY | 2 cut(s) | 201, 595 |
| BsuRI | GGCC | 1 cut(s) | 182 |
| BtrI | CACGTC | 1 cut(s) | 463 |
| BtsCI | GGATG | 4 cut(s) | 333, 506, 537, 565 |
| BveI | ACCTGC | 1 cut(s) | 104 |
| Cac8I | GCNNGC | 3 cut(s) | 111, 410, 480 |
| Cfr13I | GGNCC | 2 cut(s) | 27, 181 |
| CviAII | CATG | 1 cut(s) | 93 |
| DdeI | CTNAG | 3 cut(s) | 132, 254, 511 |
| DpnI | GATC | 3 cut(s) | 170, 203, 597 |
| DpnII | GATC | 3 cut(s) | 168, 201, 595 |
| EciI | GGCGGA | 2 cut(s) | 19, 395 |
| Eco31I | GGTCTC | 1 cut(s) | 619 |
| Eco32I | GATATC | 3 cut(s) | 6, 383, 403 |
| Eco47I | GGWCC | 1 cut(s) | 27 |
| Eco72I | CACGTG | 1 cut(s) | 106 |
| Eco88I | CYCGRG | 1 cut(s) | 446 |
| EcoO109I | RGGNCCY | 1 cut(s) | 181 |
| EcoRI | GAATTC | 1 cut(s) | 768 |
| EcoRII | CCWGG | 3 cut(s) | 197, 432, 456 |
| EcoRV | GATATC | 3 cut(s) | 6, 383, 403 |
| FaeI | CATG | 1 cut(s) | 96 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 66, 98 |
| FaqI | GGGAC | 1 cut(s) | 379 |
| FatI | CATG | 1 cut(s) | 92 |
| FauNDI | CATATG | 2 cut(s) | 266, 555 |
| FokI | GGATG | 4 cut(s) | 340, 493, 524, 572 |
| FspBI | CTAG | 2 cut(s) | 453, 665 |
| GsuI | CTGGAG | 1 cut(s) | 554 |
| HaeIII | GGCC | 1 cut(s) | 182 |
| Hin1II | CATG | 1 cut(s) | 96 |
| HindIII | AAGCTT | 1 cut(s) | 486 |
| HinfI | GANTC | 5 cut(s) | 429, 442, 547, 563, 647 |
| HphI | GGTGA | 2 cut(s) | 31, 110 |
| Hpy188I | TCNGA | 6 cut(s) | 23, 51, 257, 295, 661, 727 |
| Hpy188III | TCNNGA | 5 cut(s) | 172, 325, 378, 398, 446 |
| HpyAV | CCTTC | 2 cut(s) | 56, 92 |
| HpyCH4III | ACNGT | 1 cut(s) | 472 |
| HpyCH4IV | ACGT | 3 cut(s) | 105, 462, 639 |
| HpyCH4V | TGCA | 1 cut(s) | 113 |
| HpyF10VI | GCNNNNNNNGC | 3 cut(s) | 288, 494, 503 |
| HpyF3I | CTNAG | 3 cut(s) | 132, 254, 511 |
| HpySE526I | ACGT | 3 cut(s) | 105, 462, 639 |
| Hsp92II | CATG | 1 cut(s) | 96 |
| Kzo9I | GATC | 3 cut(s) | 168, 201, 595 |
| LmnI | GCTCC | 3 cut(s) | 296, 361, 573 |
| LweI | GCATC | 2 cut(s) | 421, 515 |
| MaeI | CTAG | 2 cut(s) | 453, 665 |
| MaeII | ACGT | 3 cut(s) | 105, 462, 639 |
| MaeIII | GTNAC | 4 cut(s) | 86, 143, 332, 644 |
| MalI | GATC | 3 cut(s) | 170, 203, 597 |
| MboI | GATC | 3 cut(s) | 168, 201, 595 |
| MboII | GAAGA | 6 cut(s) | 196, 200, 202, 602, 605, 635 |
| MflI | RGATCY | 2 cut(s) | 201, 595 |
| MhlI | GDGCHC | 1 cut(s) | 105 |
| MluCI | AATT | 5 cut(s) | 161, 259, 307, 344, 768 |
| MlyI | GAGTC | 2 cut(s) | 541, 641 |
| MnlI | CCTC | 3 cut(s) | 224, 508, 695 |
| MroXI | GAANNNNTTC | 1 cut(s) | 732 |
| MseI | TTAA | 5 cut(s) | 164, 219, 741, 749, 762 |
| MslI | CAYNNNNRTG | 3 cut(s) | 22, 542, 558 |
| MspR9I | CCNGG | 3 cut(s) | 199, 434, 458 |
| Mva1269I | GAATGC | 1 cut(s) | 133 |
| MvaI | CCWGG | 3 cut(s) | 199, 434, 458 |
| MwoI | GCNNNNNNNGC | 3 cut(s) | 288, 494, 503 |
| NdeI | CATATG | 2 cut(s) | 266, 555 |
| NdeII | GATC | 3 cut(s) | 168, 201, 595 |
| NlaIII | CATG | 1 cut(s) | 96 |
| NlaIV | GGNNCC | 1 cut(s) | 183 |
| NmuCI | GTSAC | 1 cut(s) | 644 |
| NspI | RCATGY | 1 cut(s) | 96 |
| PaeR7I | CTCGAG | 1 cut(s) | 446 |
| PciI | ACATGT | 1 cut(s) | 92 |
| PctI | GAATGC | 1 cut(s) | 133 |
| PdmI | GAANNNNTTC | 1 cut(s) | 732 |
| PfeI | GAWTC | 3 cut(s) | 429, 442, 563 |
| PfoI | TCCNGGA | 1 cut(s) | 432 |
| PleI | GAGTC | 2 cut(s) | 541, 641 |
| PmaCI | CACGTG | 1 cut(s) | 106 |
| PmlI | CACGTG | 1 cut(s) | 106 |
| PpsI | GAGTC | 2 cut(s) | 541, 641 |
| Ppu21I | YACGTR | 1 cut(s) | 106 |
| PscI | ACATGT | 1 cut(s) | 92 |
| Psp6I | CCWGG | 3 cut(s) | 197, 432, 456 |
| PspCI | CACGTG | 1 cut(s) | 106 |
| PspGI | CCWGG | 3 cut(s) | 197, 432, 456 |
| PspN4I | GGNNCC | 1 cut(s) | 183 |
| PspPI | GGNCC | 2 cut(s) | 27, 181 |
| PsuI | RGATCY | 2 cut(s) | 201, 595 |
| RseI | CAYNNNNRTG | 3 cut(s) | 22, 542, 558 |
| SaqAI | TTAA | 5 cut(s) | 164, 219, 741, 749, 762 |
| Sau3AI | GATC | 3 cut(s) | 168, 201, 595 |
| Sau96I | GGNCC | 2 cut(s) | 27, 181 |
| SchI | GAGTC | 2 cut(s) | 541, 641 |
| ScrFI | CCNGG | 3 cut(s) | 199, 434, 458 |
| SduI | GDGCHC | 1 cut(s) | 105 |
| SfaNI | GCATC | 2 cut(s) | 421, 515 |
| Sfr274I | CTCGAG | 1 cut(s) | 446 |
| SinI | GGWCC | 1 cut(s) | 27 |
| SlaI | CTCGAG | 1 cut(s) | 446 |
| SmiMI | CAYNNNNRTG | 3 cut(s) | 22, 542, 558 |
| SmlI | CTYRAG | 3 cut(s) | 416, 446, 483 |
| SmoI | CTYRAG | 3 cut(s) | 416, 446, 483 |
| Sse9I | AATT | 5 cut(s) | 161, 259, 307, 344, 768 |
| SsiI | CCGC | 3 cut(s) | 30, 406, 688 |
| SspMI | CTAG | 2 cut(s) | 453, 665 |
| StyD4I | CCNGG | 3 cut(s) | 197, 432, 456 |
| TaaI | ACNGT | 1 cut(s) | 472 |
| TaiI | ACGT | 3 cut(s) | 108, 465, 642 |
| TaqI | TCGA | 2 cut(s) | 447, 621 |
| TasI | AATT | 5 cut(s) | 161, 259, 307, 344, 768 |
| TfiI | GAWTC | 3 cut(s) | 429, 442, 563 |
| Tru1I | TTAA | 5 cut(s) | 164, 219, 741, 749, 762 |
| Tru9I | TTAA | 5 cut(s) | 164, 219, 741, 749, 762 |
| TseFI | GTSAC | 1 cut(s) | 644 |
| Tsp45I | GTSAC | 1 cut(s) | 644 |
| TspDTI | ATGAA | 4 cut(s) | 196, 253, 599, 603 |
| TspGWI | ACGGA | 1 cut(s) | 632 |
| VpaK11BI | GGWCC | 1 cut(s) | 27 |
| XapI | RAATTY | 2 cut(s) | 259, 768 |
| XceI | RCATGY | 1 cut(s) | 96 |
| XhoI | CTCGAG | 1 cut(s) | 446 |
| XmnI | GAANNNNTTC | 1 cut(s) | 732 |
| XspI | CTAG | 2 cut(s) | 453, 665 |