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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AanI | TTATAA | 1 cut(s) | 246 |
| AasI | GACNNNNNNGTC | 1 cut(s) | 578 |
| AccB1I | GGYRCC | 1 cut(s) | 422 |
| AccII | CGCG | 1 cut(s) | 522 |
| AccIII | TCCGGA | 1 cut(s) | 502 |
| AcoI | YGGCCR | 1 cut(s) | 289 |
| AcyI | GRCGYC | 1 cut(s) | 423 |
| AfiI | CCNNNNNNNGG | 2 cut(s) | 115, 600 |
| AflII | CTTAAG | 1 cut(s) | 16 |
| AflIII | ACRYGT | 1 cut(s) | 648 |
| AgsI | TTSAA | 2 cut(s) | 229, 363 |
| AjnI | CCWGG | 1 cut(s) | 576 |
| AloI | GAACNNNNNNTCC | 2 cut(s) | 52, 84 |
| AluBI | AGCT | 3 cut(s) | 133, 257, 437 |
| AluI | AGCT | 3 cut(s) | 133, 257, 437 |
| Alw21I | GWGCWC | 2 cut(s) | 68, 630 |
| Alw26I | GTCTC | 2 cut(s) | 276, 349 |
| Alw44I | GTGCAC | 1 cut(s) | 626 |
| Aor13HI | TCCGGA | 1 cut(s) | 502 |
| AoxI | GGCC | 1 cut(s) | 289 |
| ApaLI | GTGCAC | 1 cut(s) | 626 |
| ApeKI | GCWGC | 2 cut(s) | 151, 162 |
| AspLEI | GCGC | 4 cut(s) | 8, 94, 425, 524 |
| AspS9I | GGNCC | 2 cut(s) | 533, 580 |
| AsuHPI | GGTGA | 1 cut(s) | 604 |
| AvaII | GGWCC | 2 cut(s) | 533, 580 |
| BaeGI | GKGCMC | 1 cut(s) | 630 |
| BalI | TGGCCA | 1 cut(s) | 291 |
| BanI | GGYRCC | 1 cut(s) | 422 |
| BbsI | GAAGAC | 2 cut(s) | 126, 329 |
| Bbv12I | GWGCWC | 2 cut(s) | 68, 630 |
| BbvI | GCAGC | 2 cut(s) | 163, 174 |
| BccI | CCATC | 4 cut(s) | 19, 49, 195, 271 |
| BciT130I | CCWGG | 1 cut(s) | 578 |
| BcoDI | GTCTC | 2 cut(s) | 276, 349 |
| BfaI | CTAG | 2 cut(s) | 53, 477 |
| BfmI | CTRYAG | 1 cut(s) | 514 |
| BfoI | RGCGCY | 1 cut(s) | 426 |
| BfrI | CTTAAG | 1 cut(s) | 16 |
| BisI | GCNGC | 2 cut(s) | 152, 163 |
| BlsI | GCNGC | 2 cut(s) | 153, 164 |
| Bme1390I | CCNGG | 1 cut(s) | 578 |
| Bme18I | GGWCC | 2 cut(s) | 533, 580 |
| BmgT120I | GGNCC | 2 cut(s) | 533, 580 |
| BmiI | GGNNCC | 1 cut(s) | 424 |
| BmrFI | CCNGG | 1 cut(s) | 578 |
| BmsI | GCATC | 1 cut(s) | 79 |
| BpiI | GAAGAC | 2 cut(s) | 126, 329 |
| BpuEI | CTTGAG | 1 cut(s) | 167 |
| BsaBI | GATNNNNATC | 1 cut(s) | 314 |
| BsaHI | GRCGYC | 1 cut(s) | 423 |
| BsaJI | CCNNGG | 1 cut(s) | 483 |
| BsaWI | WCCGGW | 1 cut(s) | 502 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 52, 82 |
| Bsc4I | CCNNNNNNNGG | 2 cut(s) | 115, 600 |
| Bse8I | GATNNNNATC | 1 cut(s) | 314 |
| BseAI | TCCGGA | 1 cut(s) | 502 |
| BseBI | CCWGG | 1 cut(s) | 578 |
| BseDI | CCNNGG | 1 cut(s) | 483 |
| BseGI | GGATG | 2 cut(s) | 41, 573 |
| BseJI | GATNNNNATC | 1 cut(s) | 314 |
| BseLI | CCNNNNNNNGG | 2 cut(s) | 115, 600 |
| BseRI | GAGGAG | 1 cut(s) | 203 |
| BseSI | GKGCMC | 1 cut(s) | 630 |
| BseXI | GCAGC | 2 cut(s) | 163, 174 |
| BsgI | GTGCAG | 1 cut(s) | 333 |
| Bsh1236I | CGCG | 1 cut(s) | 522 |
| BshFI | GGCC | 1 cut(s) | 291 |
| BshNI | GGYRCC | 1 cut(s) | 422 |
| BsiHKAI | GWGCWC | 2 cut(s) | 68, 630 |
| BsiSI | CCGG | 1 cut(s) | 503 |
| BslFI | GGGAC | 1 cut(s) | 574 |
| BslI | CCNNNNNNNGG | 2 cut(s) | 115, 600 |
| BsmAI | GTCTC | 2 cut(s) | 276, 349 |
| BsmBI | CGTCTC | 1 cut(s) | 349 |
| BsmFI | GGGAC | 1 cut(s) | 574 |
| BsnI | GGCC | 1 cut(s) | 291 |
| Bsp1286I | GDGCHC | 2 cut(s) | 68, 630 |
| Bsp13I | TCCGGA | 1 cut(s) | 502 |
| Bsp143I | GATC | 1 cut(s) | 315 |
| BspANI | GGCC | 1 cut(s) | 291 |
| BspEI | TCCGGA | 1 cut(s) | 502 |
| BspFNI | CGCG | 1 cut(s) | 522 |
| BspHI | TCATGA | 1 cut(s) | 409 |
| BspLI | GGNNCC | 1 cut(s) | 424 |
| BspT107I | GGYRCC | 1 cut(s) | 422 |
| BspTI | CTTAAG | 1 cut(s) | 16 |
| BssECI | CCNNGG | 1 cut(s) | 483 |
| BssMI | GATC | 1 cut(s) | 315 |
| BssNI | GRCGYC | 1 cut(s) | 423 |
| Bst2UI | CCWGG | 1 cut(s) | 578 |
| Bst4CI | ACNGT | 1 cut(s) | 637 |
| BstACI | GRCGYC | 1 cut(s) | 423 |
| BstAFI | CTTAAG | 1 cut(s) | 16 |
| BstC8I | GCNNGC | 1 cut(s) | 626 |
| BstDEI | CTNAG | 2 cut(s) | 492, 551 |
| BstDSI | CCRYGG | 1 cut(s) | 483 |
| BstENI | CCTNNNNNAGG | 1 cut(s) | 113 |
| BstF5I | GGATG | 2 cut(s) | 41, 573 |
| BstFNI | CGCG | 1 cut(s) | 522 |
| BstH2I | RGCGCY | 1 cut(s) | 426 |
| BstHHI | GCGC | 4 cut(s) | 8, 94, 425, 524 |
| BstKTI | GATC | 1 cut(s) | 318 |
| BstMAI | GTCTC | 2 cut(s) | 276, 349 |
| BstMBI | GATC | 1 cut(s) | 315 |
| BstNI | CCWGG | 1 cut(s) | 578 |
| BstSCI | CCNGG | 1 cut(s) | 576 |
| BstSFI | CTRYAG | 1 cut(s) | 514 |
| BstSLI | GKGCMC | 1 cut(s) | 630 |
| BstUI | CGCG | 1 cut(s) | 522 |
| BstV1I | GCAGC | 2 cut(s) | 163, 174 |
| BstV2I | GAAGAC | 2 cut(s) | 126, 329 |
| BsuRI | GGCC | 1 cut(s) | 291 |
| BtgI | CCRYGG | 1 cut(s) | 483 |
| BtgZI | GCGATG | 1 cut(s) | 214 |
| BtsCI | GGATG | 2 cut(s) | 41, 573 |
| BtsIMutI | CAGTG | 1 cut(s) | 350 |
| Cac8I | GCNNGC | 1 cut(s) | 626 |
| CciI | TCATGA | 1 cut(s) | 409 |
| CfoI | GCGC | 4 cut(s) | 8, 94, 425, 524 |
| Cfr13I | GGNCC | 2 cut(s) | 533, 580 |
| CviAII | CATG | 3 cut(s) | 82, 410, 427 |
| CviJI | RGCY | 9 cut(s) | 22, 51, 133, 210, 257, 291, 296, 437, 496 |
| CviKI_1 | RGCY | 9 cut(s) | 22, 51, 133, 210, 257, 291, 296, 437, 496 |
| DdeI | CTNAG | 2 cut(s) | 492, 551 |
| DinI | GGCGCC | 1 cut(s) | 424 |
| DpnI | GATC | 1 cut(s) | 317 |
| DpnII | GATC | 1 cut(s) | 315 |
| DrdI | GACNNNNNNGTC | 1 cut(s) | 578 |
| DseDI | GACNNNNNNGTC | 1 cut(s) | 578 |
| EaeI | YGGCCR | 1 cut(s) | 289 |
| Eco47I | GGWCC | 2 cut(s) | 533, 580 |
| EcoNI | CCTNNNNNAGG | 1 cut(s) | 113 |
| EcoRII | CCWGG | 1 cut(s) | 576 |
| EgeI | GGCGCC | 1 cut(s) | 424 |
| EheI | GGCGCC | 1 cut(s) | 424 |
| Esp3I | CGTCTC | 1 cut(s) | 349 |
| FaeI | CATG | 3 cut(s) | 85, 413, 430 |
| FaqI | GGGAC | 1 cut(s) | 574 |
| FatI | CATG | 3 cut(s) | 81, 409, 426 |
| FauNDI | CATATG | 1 cut(s) | 585 |
| Fnu4HI | GCNGC | 2 cut(s) | 152, 163 |
| FokI | GGATG | 2 cut(s) | 28, 560 |
| Fsp4HI | GCNGC | 2 cut(s) | 152, 163 |
| FspBI | CTAG | 2 cut(s) | 53, 477 |
| GlaI | GCGC | 4 cut(s) | 7, 93, 424, 523 |
| GluI | GCNGC | 2 cut(s) | 152, 163 |
| HaeII | RGCGCY | 1 cut(s) | 426 |
| HaeIII | GGCC | 1 cut(s) | 291 |
| HapII | CCGG | 1 cut(s) | 503 |
| HhaI | GCGC | 4 cut(s) | 8, 94, 425, 524 |
| Hin1I | GRCGYC | 1 cut(s) | 423 |
| Hin1II | CATG | 3 cut(s) | 85, 413, 430 |
| Hin6I | GCGC | 4 cut(s) | 6, 92, 423, 522 |
| HinP1I | GCGC | 4 cut(s) | 6, 92, 423, 522 |
| HincII | GTYRAC | 1 cut(s) | 646 |
| HindII | GTYRAC | 1 cut(s) | 646 |
| HinfI | GANTC | 3 cut(s) | 173, 325, 506 |
| HpaII | CCGG | 1 cut(s) | 503 |
| HphI | GGTGA | 1 cut(s) | 604 |
| Hpy166II | GTNNAC | 2 cut(s) | 628, 646 |
| Hpy188I | TCNGA | 4 cut(s) | 59, 253, 276, 375 |
| Hpy188III | TCNNGA | 7 cut(s) | 34, 170, 185, 319, 410, 503, 569 |
| Hpy8I | GTNNAC | 2 cut(s) | 628, 646 |
| HpyAV | CCTTC | 2 cut(s) | 346, 598 |
| HpyCH4III | ACNGT | 1 cut(s) | 637 |
| HpyCH4IV | ACGT | 4 cut(s) | 62, 394, 432, 648 |
| HpyCH4V | TGCA | 3 cut(s) | 350, 389, 628 |
| HpyF3I | CTNAG | 2 cut(s) | 492, 551 |
| HpySE526I | ACGT | 4 cut(s) | 62, 394, 432, 648 |
| Hsp92I | GRCGYC | 1 cut(s) | 423 |
| Hsp92II | CATG | 3 cut(s) | 85, 413, 430 |
| HspAI | GCGC | 4 cut(s) | 6, 92, 423, 522 |
| KasI | GGCGCC | 1 cut(s) | 422 |
| Kpn2I | TCCGGA | 1 cut(s) | 502 |
| Kzo9I | GATC | 1 cut(s) | 315 |
| LmnI | GCTCC | 1 cut(s) | 99 |
| LpnPI | CCDG | 8 cut(s) | 19, 191, 198, 375, 516, 554, 563, 590 |
| Lsp1109I | GCAGC | 2 cut(s) | 163, 174 |
| LweI | GCATC | 1 cut(s) | 79 |
| MaeI | CTAG | 2 cut(s) | 53, 477 |
| MaeII | ACGT | 4 cut(s) | 62, 394, 432, 648 |
| MaeIII | GTNAC | 1 cut(s) | 170 |
| MalI | GATC | 1 cut(s) | 317 |
| MboI | GATC | 1 cut(s) | 315 |
| MboII | GAAGA | 3 cut(s) | 131, 334, 475 |
| MhlI | GDGCHC | 2 cut(s) | 68, 630 |
| MlsI | TGGCCA | 1 cut(s) | 291 |
| MluCI | AATT | 2 cut(s) | 367, 564 |
| MluNI | TGGCCA | 1 cut(s) | 291 |
| Mly113I | GGCGCC | 1 cut(s) | 423 |
| MlyI | GAGTC | 3 cut(s) | 167, 319, 515 |
| MnlI | CCTC | 6 cut(s) | 109, 119, 221, 224, 594, 634 |
| Mox20I | TGGCCA | 1 cut(s) | 291 |
| MroI | TCCGGA | 1 cut(s) | 502 |
| MscI | TGGCCA | 1 cut(s) | 291 |
| MseI | TTAA | 1 cut(s) | 17 |
| Msp20I | TGGCCA | 1 cut(s) | 291 |
| MspCI | CTTAAG | 1 cut(s) | 16 |
| MspI | CCGG | 1 cut(s) | 503 |
| MspR9I | CCNGG | 1 cut(s) | 578 |
| MvaI | CCWGG | 1 cut(s) | 578 |
| MvnI | CGCG | 1 cut(s) | 522 |
| NarI | GGCGCC | 1 cut(s) | 423 |
| NdeI | CATATG | 1 cut(s) | 585 |
| NdeII | GATC | 1 cut(s) | 315 |
| NlaIII | CATG | 3 cut(s) | 85, 413, 430 |
| NlaIV | GGNNCC | 1 cut(s) | 424 |
| NmuCI | GTSAC | 1 cut(s) | 170 |
| PagI | TCATGA | 1 cut(s) | 409 |
| PkrI | GCNGC | 2 cut(s) | 153, 164 |
| PleI | GAGTC | 3 cut(s) | 167, 319, 514 |
| PluTI | GGCGCC | 1 cut(s) | 426 |
| PpsI | GAGTC | 3 cut(s) | 167, 319, 514 |
| PsiI | TTATAA | 1 cut(s) | 246 |
| Psp6I | CCWGG | 1 cut(s) | 576 |
| PspGI | CCWGG | 1 cut(s) | 576 |
| PspN4I | GGNNCC | 1 cut(s) | 424 |
| PspPI | GGNCC | 2 cut(s) | 533, 580 |
| SaqAI | TTAA | 1 cut(s) | 17 |
| SatI | GCNGC | 2 cut(s) | 152, 163 |
| Sau3AI | GATC | 1 cut(s) | 315 |
| Sau96I | GGNCC | 2 cut(s) | 533, 580 |
| SchI | GAGTC | 3 cut(s) | 167, 319, 515 |
| ScrFI | CCNGG | 1 cut(s) | 578 |
| SduI | GDGCHC | 2 cut(s) | 68, 630 |
| SfaNI | GCATC | 1 cut(s) | 79 |
| SfcI | CTRYAG | 1 cut(s) | 514 |
| SfoI | GGCGCC | 1 cut(s) | 424 |
| SinI | GGWCC | 2 cut(s) | 533, 580 |
| SmlI | CTYRAG | 2 cut(s) | 16, 146 |
| SmoI | CTYRAG | 2 cut(s) | 16, 146 |
| Sse9I | AATT | 2 cut(s) | 367, 564 |
| SspDI | GGCGCC | 1 cut(s) | 422 |
| SspMI | CTAG | 2 cut(s) | 53, 477 |
| StyD4I | CCNGG | 1 cut(s) | 576 |
| TaaI | ACNGT | 1 cut(s) | 637 |
| TaiI | ACGT | 4 cut(s) | 65, 397, 435, 651 |
| TaqI | TCGA | 1 cut(s) | 318 |
| TasI | AATT | 2 cut(s) | 367, 564 |
| Tru1I | TTAA | 1 cut(s) | 17 |
| Tru9I | TTAA | 1 cut(s) | 17 |
| TscAI | CASTG | 1 cut(s) | 357 |
| TseFI | GTSAC | 1 cut(s) | 170 |
| TseI | GCWGC | 2 cut(s) | 151, 162 |
| Tsp45I | GTSAC | 1 cut(s) | 170 |
| TspDTI | ATGAA | 5 cut(s) | 98, 117, 398, 426, 443 |
| TspRI | CASTG | 1 cut(s) | 357 |
| Vha464I | CTTAAG | 1 cut(s) | 16 |
| VneI | GTGCAC | 1 cut(s) | 626 |
| VpaK11BI | GGWCC | 2 cut(s) | 533, 580 |
| XagI | CCTNNNNNAGG | 1 cut(s) | 113 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 132 |
| XspI | CTAG | 2 cut(s) | 53, 477 |