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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccB1I | GGYRCC | 2 cut(s) | 327, 386 |
| AccII | CGCG | 1 cut(s) | 312 |
| AciI | CCGC | 2 cut(s) | 106, 528 |
| AclWI | GGATC | 1 cut(s) | 264 |
| AcoI | YGGCCR | 1 cut(s) | 373 |
| AcsI | RAATTY | 1 cut(s) | 173 |
| AfaI | GTAC | 1 cut(s) | 60 |
| AfiI | CCNNNNNNNGG | 1 cut(s) | 323 |
| AgsI | TTSAA | 3 cut(s) | 121, 267, 424 |
| AjuI | GAANNNNNNNTTGG | 2 cut(s) | 33, 65 |
| AluBI | AGCT | 3 cut(s) | 205, 509, 560 |
| AluI | AGCT | 3 cut(s) | 205, 509, 560 |
| Alw21I | GWGCWC | 2 cut(s) | 207, 511 |
| Alw26I | GTCTC | 1 cut(s) | 37 |
| AlwI | GGATC | 1 cut(s) | 264 |
| AoxI | GGCC | 2 cut(s) | 373, 428 |
| ApoI | RAATTY | 1 cut(s) | 173 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 150 |
| AspLEI | GCGC | 1 cut(s) | 314 |
| AspS9I | GGNCC | 1 cut(s) | 428 |
| AsuHPI | GGTGA | 1 cut(s) | 517 |
| BaeGI | GKGCMC | 1 cut(s) | 330 |
| BalI | TGGCCA | 1 cut(s) | 375 |
| BanI | GGYRCC | 2 cut(s) | 327, 386 |
| BanII | GRGCYC | 2 cut(s) | 207, 511 |
| BauI | CACGAG | 1 cut(s) | 510 |
| BbsI | GAAGAC | 1 cut(s) | 18 |
| Bbv12I | GWGCWC | 2 cut(s) | 207, 511 |
| BccI | CCATC | 2 cut(s) | 87, 414 |
| BcoDI | GTCTC | 1 cut(s) | 37 |
| BfaI | CTAG | 2 cut(s) | 83, 596 |
| BmgT120I | GGNCC | 1 cut(s) | 428 |
| BmiI | GGNNCC | 2 cut(s) | 329, 388 |
| BpiI | GAAGAC | 1 cut(s) | 18 |
| BsaAI | YACGTR | 1 cut(s) | 62 |
| BsaI | GGTCTC | 1 cut(s) | 37 |
| BsaJI | CCNNGG | 1 cut(s) | 273 |
| Bsc4I | CCNNNNNNNGG | 1 cut(s) | 323 |
| Bse1I | ACTGG | 1 cut(s) | 42 |
| BseDI | CCNNGG | 1 cut(s) | 273 |
| BseGI | GGATG | 2 cut(s) | 232, 243 |
| BseLI | CCNNNNNNNGG | 1 cut(s) | 323 |
| BseNI | ACTGG | 1 cut(s) | 42 |
| BseSI | GKGCMC | 1 cut(s) | 330 |
| Bsh1236I | CGCG | 1 cut(s) | 312 |
| BshFI | GGCC | 2 cut(s) | 375, 430 |
| BshNI | GGYRCC | 2 cut(s) | 327, 386 |
| BsiHKAI | GWGCWC | 2 cut(s) | 207, 511 |
| BsiWI | CGTACG | 1 cut(s) | 58 |
| BslI | CCNNNNNNNGG | 1 cut(s) | 323 |
| BsmAI | GTCTC | 1 cut(s) | 37 |
| BsmI | GAATGC | 1 cut(s) | 494 |
| BsnI | GGCC | 2 cut(s) | 375, 430 |
| Bso31I | GGTCTC | 1 cut(s) | 37 |
| Bsp1286I | GDGCHC | 3 cut(s) | 207, 330, 511 |
| Bsp143I | GATC | 4 cut(s) | 186, 269, 580, 592 |
| BspACI | CCGC | 2 cut(s) | 106, 528 |
| BspANI | GGCC | 2 cut(s) | 375, 430 |
| BspFNI | CGCG | 1 cut(s) | 312 |
| BspHI | TCATGA | 1 cut(s) | 199 |
| BspLI | GGNNCC | 2 cut(s) | 329, 388 |
| BspPI | GGATC | 1 cut(s) | 264 |
| BspT107I | GGYRCC | 2 cut(s) | 327, 386 |
| BspTNI | GGTCTC | 1 cut(s) | 37 |
| BsrI | ACTGG | 1 cut(s) | 42 |
| BssECI | CCNNGG | 1 cut(s) | 273 |
| BssMI | GATC | 4 cut(s) | 186, 269, 580, 592 |
| BssSI | CACGAG | 1 cut(s) | 510 |
| Bst2BI | CACGAG | 1 cut(s) | 510 |
| BstBAI | YACGTR | 1 cut(s) | 62 |
| BstDEI | CTNAG | 2 cut(s) | 318, 399 |
| BstDSI | CCRYGG | 1 cut(s) | 273 |
| BstENI | CCTNNNNNAGG | 1 cut(s) | 321 |
| BstF5I | GGATG | 2 cut(s) | 232, 243 |
| BstFNI | CGCG | 1 cut(s) | 312 |
| BstHHI | GCGC | 1 cut(s) | 314 |
| BstKTI | GATC | 4 cut(s) | 189, 272, 583, 595 |
| BstMAI | GTCTC | 1 cut(s) | 37 |
| BstMBI | GATC | 4 cut(s) | 186, 269, 580, 592 |
| BstMWI | GCNNNNNNNGC | 2 cut(s) | 536, 557 |
| BstSLI | GKGCMC | 1 cut(s) | 330 |
| BstUI | CGCG | 1 cut(s) | 312 |
| BstV2I | GAAGAC | 1 cut(s) | 18 |
| BstX2I | RGATCY | 1 cut(s) | 269 |
| BstXI | CCANNNNNNTGG | 1 cut(s) | 383 |
| BstYI | RGATCY | 1 cut(s) | 269 |
| BsuRI | GGCC | 2 cut(s) | 375, 430 |
| BtgI | CCRYGG | 1 cut(s) | 273 |
| BtsCI | GGATG | 2 cut(s) | 232, 243 |
| BtsIMutI | CAGTG | 1 cut(s) | 35 |
| CciI | TCATGA | 1 cut(s) | 199 |
| CfoI | GCGC | 1 cut(s) | 314 |
| Cfr13I | GGNCC | 1 cut(s) | 428 |
| Csp6I | GTAC | 1 cut(s) | 59 |
| CspCI | CAANNNNNGTGG | 2 cut(s) | 255, 290 |
| CviAII | CATG | 4 cut(s) | 200, 236, 344, 377 |
| CviJI | RGCY | 9 cut(s) | 25, 102, 205, 215, 375, 405, 430, 509, 560 |
| CviKI_1 | RGCY | 9 cut(s) | 25, 102, 205, 215, 375, 405, 430, 509, 560 |
| CviQI | GTAC | 1 cut(s) | 59 |
| DdeI | CTNAG | 2 cut(s) | 318, 399 |
| DpnI | GATC | 4 cut(s) | 188, 271, 582, 594 |
| DpnII | GATC | 4 cut(s) | 186, 269, 580, 592 |
| EaeI | YGGCCR | 1 cut(s) | 373 |
| Ecl136II | GAGCTC | 2 cut(s) | 205, 509 |
| Eco24I | GRGCYC | 2 cut(s) | 207, 511 |
| Eco31I | GGTCTC | 1 cut(s) | 37 |
| Eco53kI | GAGCTC | 2 cut(s) | 205, 509 |
| EcoICRI | GAGCTC | 2 cut(s) | 205, 509 |
| EcoNI | CCTNNNNNAGG | 1 cut(s) | 321 |
| EcoO109I | RGGNCCY | 1 cut(s) | 428 |
| EcoRI | GAATTC | 1 cut(s) | 173 |
| EcoT38I | GRGCYC | 2 cut(s) | 207, 511 |
| FaeI | CATG | 4 cut(s) | 203, 239, 347, 380 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 544, 576 |
| FatI | CATG | 4 cut(s) | 199, 235, 343, 376 |
| FokI | GGATG | 2 cut(s) | 230, 239 |
| FriOI | GRGCYC | 2 cut(s) | 207, 511 |
| FspBI | CTAG | 2 cut(s) | 83, 596 |
| GlaI | GCGC | 1 cut(s) | 313 |
| HaeIII | GGCC | 2 cut(s) | 375, 430 |
| HhaI | GCGC | 1 cut(s) | 314 |
| Hin1II | CATG | 4 cut(s) | 203, 239, 347, 380 |
| Hin6I | GCGC | 1 cut(s) | 312 |
| HinP1I | GCGC | 1 cut(s) | 312 |
| HincII | GTYRAC | 1 cut(s) | 341 |
| HindII | GTYRAC | 1 cut(s) | 341 |
| HindIII | AAGCTT | 1 cut(s) | 558 |
| HinfI | GANTC | 2 cut(s) | 65, 296 |
| HphI | GGTGA | 1 cut(s) | 517 |
| Hpy166II | GTNNAC | 2 cut(s) | 182, 341 |
| Hpy188I | TCNGA | 1 cut(s) | 145 |
| Hpy188III | TCNNGA | 7 cut(s) | 131, 200, 267, 468, 512, 584, 596 |
| Hpy8I | GTNNAC | 2 cut(s) | 182, 341 |
| HpyAV | CCTTC | 1 cut(s) | 15 |
| HpyCH4IV | ACGT | 2 cut(s) | 57, 61 |
| HpyF10VI | GCNNNNNNNGC | 2 cut(s) | 536, 557 |
| HpyF3I | CTNAG | 2 cut(s) | 318, 399 |
| HpySE526I | ACGT | 2 cut(s) | 57, 61 |
| Hsp92II | CATG | 4 cut(s) | 203, 239, 347, 380 |
| HspAI | GCGC | 1 cut(s) | 312 |
| Kzo9I | GATC | 4 cut(s) | 186, 269, 580, 592 |
| LmnI | GCTCC | 1 cut(s) | 78 |
| LpnPI | CCDG | 5 cut(s) | 23, 31, 83, 90, 357 |
| MaeI | CTAG | 2 cut(s) | 83, 596 |
| MaeII | ACGT | 2 cut(s) | 57, 61 |
| MaeIII | GTNAC | 2 cut(s) | 62, 523 |
| MalI | GATC | 4 cut(s) | 188, 271, 582, 594 |
| MboI | GATC | 4 cut(s) | 186, 269, 580, 592 |
| MboII | GAAGA | 7 cut(s) | 20, 23, 53, 265, 527, 590, 599 |
| MflI | RGATCY | 1 cut(s) | 269 |
| MhlI | GDGCHC | 3 cut(s) | 207, 330, 511 |
| MlsI | TGGCCA | 1 cut(s) | 375 |
| MluCI | AATT | 4 cut(s) | 173, 262, 301, 519 |
| MluNI | TGGCCA | 1 cut(s) | 375 |
| MlyI | GAGTC | 1 cut(s) | 59 |
| MnlI | CCTC | 6 cut(s) | 113, 317, 349, 353, 379, 441 |
| Mox20I | TGGCCA | 1 cut(s) | 375 |
| MroXI | GAANNNNTTC | 1 cut(s) | 150 |
| MscI | TGGCCA | 1 cut(s) | 375 |
| MseI | TTAA | 2 cut(s) | 159, 167 |
| MslI | CAYNNNNRTG | 3 cut(s) | 248, 381, 411 |
| Msp20I | TGGCCA | 1 cut(s) | 375 |
| Mva1269I | GAATGC | 1 cut(s) | 494 |
| MvnI | CGCG | 1 cut(s) | 312 |
| MwoI | GCNNNNNNNGC | 2 cut(s) | 536, 557 |
| NdeII | GATC | 4 cut(s) | 186, 269, 580, 592 |
| NlaIII | CATG | 4 cut(s) | 203, 239, 347, 380 |
| NlaIV | GGNNCC | 2 cut(s) | 329, 388 |
| NmuCI | GTSAC | 2 cut(s) | 62, 523 |
| PagI | TCATGA | 1 cut(s) | 199 |
| PctI | GAATGC | 1 cut(s) | 494 |
| PdmI | GAANNNNTTC | 1 cut(s) | 150 |
| PfeI | GAWTC | 1 cut(s) | 296 |
| Pfl23II | CGTACG | 1 cut(s) | 58 |
| PleI | GAGTC | 1 cut(s) | 59 |
| PpsI | GAGTC | 1 cut(s) | 59 |
| Ppu21I | YACGTR | 1 cut(s) | 62 |
| Psp124BI | GAGCTC | 2 cut(s) | 207, 511 |
| PspLI | CGTACG | 1 cut(s) | 58 |
| PspN4I | GGNNCC | 2 cut(s) | 329, 388 |
| PspPI | GGNCC | 1 cut(s) | 428 |
| PsuI | RGATCY | 1 cut(s) | 269 |
| RsaI | GTAC | 1 cut(s) | 60 |
| RsaNI | GTAC | 1 cut(s) | 59 |
| RseI | CAYNNNNRTG | 3 cut(s) | 248, 381, 411 |
| SacI | GAGCTC | 2 cut(s) | 207, 511 |
| SaqAI | TTAA | 2 cut(s) | 159, 167 |
| Sau3AI | GATC | 4 cut(s) | 186, 269, 580, 592 |
| Sau96I | GGNCC | 1 cut(s) | 428 |
| SchI | GAGTC | 1 cut(s) | 59 |
| SduI | GDGCHC | 3 cut(s) | 207, 330, 511 |
| SetI | ASST | 7 cut(s) | 60, 64, 84, 197, 207, 511, 562 |
| SmiMI | CAYNNNNRTG | 3 cut(s) | 248, 381, 411 |
| Sse9I | AATT | 4 cut(s) | 173, 262, 301, 519 |
| SsiI | CCGC | 2 cut(s) | 106, 528 |
| SspMI | CTAG | 2 cut(s) | 83, 596 |
| SstI | GAGCTC | 2 cut(s) | 207, 511 |
| TaiI | ACGT | 2 cut(s) | 60, 64 |
| TaqI | TCGA | 2 cut(s) | 469, 570 |
| TasI | AATT | 4 cut(s) | 173, 262, 301, 519 |
| TfiI | GAWTC | 1 cut(s) | 296 |
| Tru1I | TTAA | 2 cut(s) | 159, 167 |
| Tru9I | TTAA | 2 cut(s) | 159, 167 |
| TscAI | CASTG | 1 cut(s) | 42 |
| TseFI | GTSAC | 2 cut(s) | 62, 523 |
| Tsp45I | GTSAC | 2 cut(s) | 62, 523 |
| TspDTI | ATGAA | 5 cut(s) | 17, 21, 188, 243, 487 |
| TspGWI | ACGGA | 1 cut(s) | 262 |
| TspRI | CASTG | 1 cut(s) | 42 |
| XagI | CCTNNNNNAGG | 1 cut(s) | 321 |
| XapI | RAATTY | 1 cut(s) | 173 |
| XbaI | TCTAGA | 1 cut(s) | 595 |
| XmnI | GAANNNNTTC | 1 cut(s) | 150 |
| XspI | CTAG | 2 cut(s) | 83, 596 |