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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AanI | TTATAA | 3 cut(s) | 327, 345, 398 |
| AciI | CCGC | 2 cut(s) | 140, 351 |
| AclWI | GGATC | 1 cut(s) | 371 |
| AcsI | RAATTY | 1 cut(s) | 7 |
| AfaI | GTAC | 1 cut(s) | 206 |
| AfiI | CCNNNNNNNGG | 2 cut(s) | 64, 360 |
| AgsI | TTSAA | 4 cut(s) | 196, 217, 320, 419 |
| AluBI | AGCT | 5 cut(s) | 134, 152, 232, 541, 575 |
| AluI | AGCT | 5 cut(s) | 134, 152, 232, 541, 575 |
| Alw21I | GWGCWC | 2 cut(s) | 282, 543 |
| Alw26I | GTCTC | 1 cut(s) | 567 |
| AlwI | GGATC | 1 cut(s) | 371 |
| AoxI | GGCC | 3 cut(s) | 66, 107, 405 |
| ApaI | GGGCCC | 1 cut(s) | 70 |
| ApeKI | GCWGC | 1 cut(s) | 463 |
| ApoI | RAATTY | 1 cut(s) | 7 |
| AseI | ATTAAT | 1 cut(s) | 596 |
| AspA2I | CCTAGG | 1 cut(s) | 284 |
| AspLEI | GCGC | 2 cut(s) | 174, 315 |
| AspS9I | GGNCC | 3 cut(s) | 66, 67, 107 |
| AsuHPI | GGTGA | 2 cut(s) | 254, 358 |
| AvrII | CCTAGG | 1 cut(s) | 284 |
| BaeGI | GKGCMC | 2 cut(s) | 70, 292 |
| BanII | GRGCYC | 2 cut(s) | 70, 543 |
| BarI | GAAGNNNNNNTAC | 2 cut(s) | 188, 220 |
| BbsI | GAAGAC | 1 cut(s) | 506 |
| Bbv12I | GWGCWC | 2 cut(s) | 282, 543 |
| BbvI | GCAGC | 1 cut(s) | 475 |
| BccI | CCATC | 3 cut(s) | 186, 192, 564 |
| BcoDI | GTCTC | 1 cut(s) | 567 |
| BfaI | CTAG | 4 cut(s) | 285, 572, 576, 613 |
| BisI | GCNGC | 1 cut(s) | 464 |
| BlnI | CCTAGG | 1 cut(s) | 284 |
| BlpI | GCTNAGC | 1 cut(s) | 525 |
| BlsI | GCNGC | 1 cut(s) | 465 |
| BmcAI | AGTACT | 1 cut(s) | 206 |
| BmgT120I | GGNCC | 3 cut(s) | 66, 67, 107 |
| BmiI | GGNNCC | 1 cut(s) | 68 |
| BmsI | GCATC | 3 cut(s) | 64, 316, 402 |
| BpiI | GAAGAC | 1 cut(s) | 506 |
| Bpu10I | CCTNAGC | 1 cut(s) | 153 |
| Bpu1102I | GCTNAGC | 1 cut(s) | 525 |
| BpuEI | CTTGAG | 1 cut(s) | 248 |
| BsaJI | CCNNGG | 2 cut(s) | 103, 284 |
| Bsc4I | CCNNNNNNNGG | 2 cut(s) | 64, 360 |
| BseDI | CCNNGG | 2 cut(s) | 103, 284 |
| BseGI | GGATG | 1 cut(s) | 205 |
| BseLI | CCNNNNNNNGG | 2 cut(s) | 64, 360 |
| BseMII | CTCAG | 3 cut(s) | 144, 416, 516 |
| BseSI | GKGCMC | 2 cut(s) | 70, 292 |
| BseXI | GCAGC | 1 cut(s) | 475 |
| BshFI | GGCC | 3 cut(s) | 68, 109, 407 |
| BsiHKAI | GWGCWC | 2 cut(s) | 282, 543 |
| BslI | CCNNNNNNNGG | 2 cut(s) | 64, 360 |
| BsmAI | GTCTC | 1 cut(s) | 567 |
| BsnI | GGCC | 3 cut(s) | 68, 109, 407 |
| Bsp120I | GGGCCC | 1 cut(s) | 66 |
| Bsp1286I | GDGCHC | 4 cut(s) | 70, 282, 292, 543 |
| Bsp143I | GATC | 2 cut(s) | 363, 499 |
| Bsp1720I | GCTNAGC | 1 cut(s) | 525 |
| BspACI | CCGC | 2 cut(s) | 140, 351 |
| BspANI | GGCC | 3 cut(s) | 68, 109, 407 |
| BspCNI | CTCAG | 3 cut(s) | 143, 415, 517 |
| BspLI | GGNNCC | 1 cut(s) | 68 |
| BspPI | GGATC | 1 cut(s) | 371 |
| BssECI | CCNNGG | 2 cut(s) | 103, 284 |
| BssMI | GATC | 2 cut(s) | 363, 499 |
| BssT1I | CCWWGG | 2 cut(s) | 103, 284 |
| Bst4CI | ACNGT | 1 cut(s) | 274 |
| BstDEI | CTNAG | 4 cut(s) | 130, 153, 402, 525 |
| BstF5I | GGATG | 1 cut(s) | 205 |
| BstHHI | GCGC | 2 cut(s) | 174, 315 |
| BstKTI | GATC | 2 cut(s) | 366, 502 |
| BstMAI | GTCTC | 1 cut(s) | 567 |
| BstMBI | GATC | 2 cut(s) | 363, 499 |
| BstMWI | GCNNNNNNNGC | 1 cut(s) | 74 |
| BstSLI | GKGCMC | 2 cut(s) | 70, 292 |
| BstV1I | GCAGC | 1 cut(s) | 475 |
| BstV2I | GAAGAC | 1 cut(s) | 506 |
| BstXI | CCANNNNNNTGG | 1 cut(s) | 104 |
| BsuRI | GGCC | 3 cut(s) | 68, 109, 407 |
| BtsCI | GGATG | 1 cut(s) | 205 |
| CfoI | GCGC | 2 cut(s) | 174, 315 |
| Cfr13I | GGNCC | 3 cut(s) | 66, 67, 107 |
| CseI | GACGC | 1 cut(s) | 313 |
| Csp6I | GTAC | 1 cut(s) | 205 |
| CviAII | CATG | 3 cut(s) | 355, 409, 440 |
| CviQI | GTAC | 1 cut(s) | 205 |
| DdeI | CTNAG | 4 cut(s) | 130, 153, 402, 525 |
| DpnI | GATC | 2 cut(s) | 365, 501 |
| DpnII | GATC | 2 cut(s) | 363, 499 |
| EciI | GGCGGA | 1 cut(s) | 340 |
| Ecl136II | GAGCTC | 1 cut(s) | 541 |
| Eco130I | CCWWGG | 2 cut(s) | 103, 284 |
| Eco24I | GRGCYC | 2 cut(s) | 70, 543 |
| Eco53kI | GAGCTC | 1 cut(s) | 541 |
| EcoICRI | GAGCTC | 1 cut(s) | 541 |
| EcoO109I | RGGNCCY | 1 cut(s) | 67 |
| EcoT14I | CCWWGG | 2 cut(s) | 103, 284 |
| EcoT38I | GRGCYC | 2 cut(s) | 70, 543 |
| ErhI | CCWWGG | 2 cut(s) | 103, 284 |
| FaeI | CATG | 3 cut(s) | 358, 412, 443 |
| FalI | AAGNNNNNCTT | 4 cut(s) | 210, 242, 527, 559 |
| FatI | CATG | 3 cut(s) | 354, 408, 439 |
| FauI | CCCGC | 1 cut(s) | 147 |
| Fnu4HI | GCNGC | 1 cut(s) | 464 |
| FokI | GGATG | 1 cut(s) | 212 |
| FriOI | GRGCYC | 2 cut(s) | 70, 543 |
| Fsp4HI | GCNGC | 1 cut(s) | 464 |
| FspBI | CTAG | 4 cut(s) | 285, 572, 576, 613 |
| GlaI | GCGC | 2 cut(s) | 173, 314 |
| GluI | GCNGC | 1 cut(s) | 464 |
| HaeIII | GGCC | 3 cut(s) | 68, 109, 407 |
| HgaI | GACGC | 1 cut(s) | 313 |
| HhaI | GCGC | 2 cut(s) | 174, 315 |
| Hin1II | CATG | 3 cut(s) | 358, 412, 443 |
| Hin6I | GCGC | 2 cut(s) | 172, 313 |
| HinP1I | GCGC | 2 cut(s) | 172, 313 |
| HinfI | GANTC | 2 cut(s) | 82, 379 |
| HphI | GGTGA | 2 cut(s) | 254, 358 |
| Hpy188I | TCNGA | 1 cut(s) | 499 |
| Hpy188III | TCNNGA | 3 cut(s) | 89, 320, 361 |
| HpyAV | CCTTC | 5 cut(s) | 44, 116, 190, 326, 436 |
| HpyCH4III | ACNGT | 1 cut(s) | 274 |
| HpyCH4IV | ACGT | 1 cut(s) | 292 |
| HpyCH4V | TGCA | 1 cut(s) | 77 |
| HpyF10VI | GCNNNNNNNGC | 1 cut(s) | 74 |
| HpyF3I | CTNAG | 4 cut(s) | 130, 153, 402, 525 |
| HpySE526I | ACGT | 1 cut(s) | 292 |
| Hsp92II | CATG | 3 cut(s) | 358, 412, 443 |
| HspAI | GCGC | 2 cut(s) | 172, 313 |
| Kzo9I | GATC | 2 cut(s) | 363, 499 |
| LmnI | GCTCC | 2 cut(s) | 285, 538 |
| LpnPI | CCDG | 7 cut(s) | 30, 71, 173, 225, 346, 389, 503 |
| Lsp1109I | GCAGC | 1 cut(s) | 475 |
| LweI | GCATC | 3 cut(s) | 64, 316, 402 |
| MaeI | CTAG | 4 cut(s) | 285, 572, 576, 613 |
| MaeII | ACGT | 1 cut(s) | 292 |
| MalI | GATC | 2 cut(s) | 365, 501 |
| MboI | GATC | 2 cut(s) | 363, 499 |
| MboII | GAAGA | 2 cut(s) | 506, 562 |
| MhlI | GDGCHC | 4 cut(s) | 70, 282, 292, 543 |
| MluCI | AATT | 6 cut(s) | 7, 17, 328, 346, 393, 597 |
| MnlI | CCTC | 3 cut(s) | 379, 454, 579 |
| MseI | TTAA | 3 cut(s) | 209, 545, 596 |
| MwoI | GCNNNNNNNGC | 1 cut(s) | 74 |
| NdeII | GATC | 2 cut(s) | 363, 499 |
| NlaIII | CATG | 3 cut(s) | 358, 412, 443 |
| NlaIV | GGNNCC | 1 cut(s) | 68 |
| PfeI | GAWTC | 2 cut(s) | 82, 379 |
| PkrI | GCNGC | 1 cut(s) | 465 |
| PshBI | ATTAAT | 1 cut(s) | 596 |
| PsiI | TTATAA | 3 cut(s) | 327, 345, 398 |
| Psp124BI | GAGCTC | 1 cut(s) | 543 |
| PspN4I | GGNNCC | 1 cut(s) | 68 |
| PspOMI | GGGCCC | 1 cut(s) | 66 |
| PspPI | GGNCC | 3 cut(s) | 66, 67, 107 |
| RsaI | GTAC | 1 cut(s) | 206 |
| RsaNI | GTAC | 1 cut(s) | 205 |
| SacI | GAGCTC | 1 cut(s) | 543 |
| SaqAI | TTAA | 3 cut(s) | 209, 545, 596 |
| SatI | GCNGC | 1 cut(s) | 464 |
| Sau3AI | GATC | 2 cut(s) | 363, 499 |
| Sau96I | GGNCC | 3 cut(s) | 66, 67, 107 |
| ScaI | AGTACT | 1 cut(s) | 206 |
| SduI | GDGCHC | 4 cut(s) | 70, 282, 292, 543 |
| SfaNI | GCATC | 3 cut(s) | 64, 316, 402 |
| SmlI | CTYRAG | 1 cut(s) | 227 |
| SmoI | CTYRAG | 1 cut(s) | 227 |
| Sse9I | AATT | 6 cut(s) | 7, 17, 328, 346, 393, 597 |
| SsiI | CCGC | 2 cut(s) | 140, 351 |
| SspI | AATATT | 1 cut(s) | 494 |
| SspMI | CTAG | 4 cut(s) | 285, 572, 576, 613 |
| SstI | GAGCTC | 1 cut(s) | 543 |
| StyI | CCWWGG | 2 cut(s) | 103, 284 |
| TaaI | ACNGT | 1 cut(s) | 274 |
| TaiI | ACGT | 1 cut(s) | 295 |
| TaqI | TCGA | 1 cut(s) | 90 |
| TasI | AATT | 6 cut(s) | 7, 17, 328, 346, 393, 597 |
| TatI | WGTACW | 1 cut(s) | 204 |
| TfiI | GAWTC | 2 cut(s) | 82, 379 |
| Tru1I | TTAA | 3 cut(s) | 209, 545, 596 |
| Tru9I | TTAA | 3 cut(s) | 209, 545, 596 |
| TseI | GCWGC | 1 cut(s) | 463 |
| TspDTI | ATGAA | 7 cut(s) | 20, 74, 312, 392, 428, 563, 582 |
| VspI | ATTAAT | 1 cut(s) | 596 |
| XapI | RAATTY | 1 cut(s) | 7 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 231 |
| XmaJI | CCTAGG | 1 cut(s) | 284 |
| XspI | CTAG | 4 cut(s) | 285, 572, 576, 613 |
| ZrmI | AGTACT | 1 cut(s) | 206 |