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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccII | CGCG | 1 cut(s) | 297 |
| AciI | CCGC | 2 cut(s) | 103, 612 |
| AclWI | GGATC | 1 cut(s) | 293 |
| AcoI | YGGCCR | 1 cut(s) | 457 |
| AcsI | RAATTY | 1 cut(s) | 170 |
| AcuI | CTGAAG | 1 cut(s) | 162 |
| AdeI | CACNNNGTG | 1 cut(s) | 652 |
| AfiI | CCNNNNNNNGG | 1 cut(s) | 18 |
| AgsI | TTSAA | 2 cut(s) | 118, 508 |
| AjuI | GAANNNNNNNTTGG | 2 cut(s) | 30, 62 |
| AluBI | AGCT | 2 cut(s) | 593, 644 |
| AluI | AGCT | 2 cut(s) | 593, 644 |
| Alw21I | GWGCWC | 1 cut(s) | 595 |
| Alw26I | GTCTC | 2 cut(s) | 34, 238 |
| AlwI | GGATC | 1 cut(s) | 293 |
| AoxI | GGCC | 2 cut(s) | 311, 457 |
| ApoI | RAATTY | 1 cut(s) | 170 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 147 |
| AspLEI | GCGC | 3 cut(s) | 299, 473, 514 |
| AspS9I | GGNCC | 2 cut(s) | 312, 359 |
| AsuHPI | GGTGA | 1 cut(s) | 601 |
| AvaII | GGWCC | 1 cut(s) | 359 |
| BaeGI | GKGCMC | 1 cut(s) | 580 |
| BalI | TGGCCA | 1 cut(s) | 459 |
| BanII | GRGCYC | 1 cut(s) | 595 |
| BauI | CACGAG | 1 cut(s) | 594 |
| BbsI | GAAGAC | 1 cut(s) | 218 |
| Bbv12I | GWGCWC | 1 cut(s) | 595 |
| BccI | CCATC | 3 cut(s) | 84, 238, 498 |
| BcoDI | GTCTC | 2 cut(s) | 34, 238 |
| BfaI | CTAG | 3 cut(s) | 15, 80, 680 |
| BfmI | CTRYAG | 1 cut(s) | 276 |
| BfoI | RGCGCY | 2 cut(s) | 474, 515 |
| BglII | AGATCT | 1 cut(s) | 676 |
| Bme18I | GGWCC | 1 cut(s) | 359 |
| BmgT120I | GGNCC | 2 cut(s) | 312, 359 |
| BmiI | GGNNCC | 2 cut(s) | 314, 413 |
| BmsI | GCATC | 1 cut(s) | 184 |
| BpiI | GAAGAC | 1 cut(s) | 218 |
| BsaI | GGTCTC | 1 cut(s) | 34 |
| Bsc4I | CCNNNNNNNGG | 1 cut(s) | 18 |
| Bse1I | ACTGG | 1 cut(s) | 609 |
| BseGI | GGATG | 2 cut(s) | 54, 356 |
| BseLI | CCNNNNNNNGG | 1 cut(s) | 18 |
| BseMII | CTCAG | 1 cut(s) | 558 |
| BseNI | ACTGG | 1 cut(s) | 609 |
| BseSI | GKGCMC | 1 cut(s) | 580 |
| Bsh1236I | CGCG | 1 cut(s) | 297 |
| BshFI | GGCC | 2 cut(s) | 313, 459 |
| BsiHKAI | GWGCWC | 1 cut(s) | 595 |
| BslI | CCNNNNNNNGG | 1 cut(s) | 18 |
| BsmAI | GTCTC | 2 cut(s) | 34, 238 |
| BsmBI | CGTCTC | 1 cut(s) | 238 |
| BsnI | GGCC | 2 cut(s) | 313, 459 |
| Bso31I | GGTCTC | 1 cut(s) | 34 |
| Bsp1286I | GDGCHC | 2 cut(s) | 580, 595 |
| Bsp143I | GATC | 4 cut(s) | 186, 285, 664, 676 |
| BspACI | CCGC | 2 cut(s) | 103, 612 |
| BspANI | GGCC | 2 cut(s) | 313, 459 |
| BspCNI | CTCAG | 1 cut(s) | 559 |
| BspFNI | CGCG | 1 cut(s) | 297 |
| BspHI | TCATGA | 1 cut(s) | 667 |
| BspLI | GGNNCC | 2 cut(s) | 314, 413 |
| BspPI | GGATC | 1 cut(s) | 293 |
| BspTNI | GGTCTC | 1 cut(s) | 34 |
| BsrI | ACTGG | 1 cut(s) | 609 |
| BssMI | GATC | 4 cut(s) | 186, 285, 664, 676 |
| BssSI | CACGAG | 1 cut(s) | 594 |
| Bst2BI | CACGAG | 1 cut(s) | 594 |
| Bst6I | CTCTTC | 1 cut(s) | 412 |
| BstDEI | CTNAG | 5 cut(s) | 252, 303, 335, 483, 567 |
| BstEII | GGTNACC | 2 cut(s) | 386, 607 |
| BstENI | CCTNNNNNAGG | 1 cut(s) | 16 |
| BstF5I | GGATG | 2 cut(s) | 54, 356 |
| BstFNI | CGCG | 1 cut(s) | 297 |
| BstH2I | RGCGCY | 2 cut(s) | 474, 515 |
| BstHHI | GCGC | 3 cut(s) | 299, 473, 514 |
| BstKTI | GATC | 4 cut(s) | 189, 288, 667, 679 |
| BstMAI | GTCTC | 2 cut(s) | 34, 238 |
| BstMBI | GATC | 4 cut(s) | 186, 285, 664, 676 |
| BstMWI | GCNNNNNNNGC | 3 cut(s) | 509, 620, 641 |
| BstPI | GGTNACC | 2 cut(s) | 386, 607 |
| BstSFI | CTRYAG | 1 cut(s) | 276 |
| BstSLI | GKGCMC | 1 cut(s) | 580 |
| BstUI | CGCG | 1 cut(s) | 297 |
| BstV2I | GAAGAC | 1 cut(s) | 218 |
| BstX2I | RGATCY | 1 cut(s) | 676 |
| BstYI | RGATCY | 1 cut(s) | 676 |
| BsuRI | GGCC | 2 cut(s) | 313, 459 |
| BtgZI | GCGATG | 1 cut(s) | 212 |
| BtsCI | GGATG | 2 cut(s) | 54, 356 |
| CciI | TCATGA | 1 cut(s) | 667 |
| CfoI | GCGC | 3 cut(s) | 299, 473, 514 |
| Cfr13I | GGNCC | 2 cut(s) | 312, 359 |
| CseI | GACGC | 1 cut(s) | 509 |
| CviAII | CATG | 2 cut(s) | 461, 668 |
| CviJI | RGCY | 7 cut(s) | 22, 99, 313, 459, 489, 593, 644 |
| CviKI_1 | RGCY | 7 cut(s) | 22, 99, 313, 459, 489, 593, 644 |
| DdeI | CTNAG | 5 cut(s) | 252, 303, 335, 483, 567 |
| DpnI | GATC | 4 cut(s) | 188, 287, 666, 678 |
| DpnII | GATC | 4 cut(s) | 186, 285, 664, 676 |
| DraIII | CACNNNGTG | 1 cut(s) | 652 |
| EaeI | YGGCCR | 1 cut(s) | 457 |
| Eam1104I | CTCTTC | 1 cut(s) | 412 |
| EarI | CTCTTC | 1 cut(s) | 412 |
| Ecl136II | GAGCTC | 1 cut(s) | 593 |
| Eco24I | GRGCYC | 1 cut(s) | 595 |
| Eco31I | GGTCTC | 1 cut(s) | 34 |
| Eco47I | GGWCC | 1 cut(s) | 359 |
| Eco53kI | GAGCTC | 1 cut(s) | 593 |
| Eco57I | CTGAAG | 1 cut(s) | 162 |
| Eco91I | GGTNACC | 2 cut(s) | 386, 607 |
| EcoICRI | GAGCTC | 1 cut(s) | 593 |
| EcoNI | CCTNNNNNAGG | 1 cut(s) | 16 |
| EcoO65I | GGTNACC | 2 cut(s) | 386, 607 |
| EcoRI | GAATTC | 1 cut(s) | 170 |
| EcoT38I | GRGCYC | 1 cut(s) | 595 |
| Esp3I | CGTCTC | 1 cut(s) | 238 |
| FaeI | CATG | 2 cut(s) | 464, 671 |
| FatI | CATG | 2 cut(s) | 460, 667 |
| FauI | CCCGC | 1 cut(s) | 110 |
| FokI | GGATG | 2 cut(s) | 41, 363 |
| FriOI | GRGCYC | 1 cut(s) | 595 |
| FspBI | CTAG | 3 cut(s) | 15, 80, 680 |
| GlaI | GCGC | 3 cut(s) | 298, 472, 513 |
| HaeII | RGCGCY | 2 cut(s) | 474, 515 |
| HaeIII | GGCC | 2 cut(s) | 313, 459 |
| HgaI | GACGC | 1 cut(s) | 509 |
| HhaI | GCGC | 3 cut(s) | 299, 473, 514 |
| Hin1II | CATG | 2 cut(s) | 464, 671 |
| Hin6I | GCGC | 3 cut(s) | 297, 471, 512 |
| HinP1I | GCGC | 3 cut(s) | 297, 471, 512 |
| HincII | GTYRAC | 1 cut(s) | 425 |
| HindII | GTYRAC | 1 cut(s) | 425 |
| HinfI | GANTC | 3 cut(s) | 62, 214, 264 |
| HphI | GGTGA | 1 cut(s) | 601 |
| Hpy166II | GTNNAC | 1 cut(s) | 425 |
| Hpy188I | TCNGA | 2 cut(s) | 142, 568 |
| Hpy188III | TCNNGA | 8 cut(s) | 15, 74, 128, 348, 552, 596, 668, 680 |
| Hpy8I | GTNNAC | 1 cut(s) | 425 |
| HpyAV | CCTTC | 3 cut(s) | 12, 235, 377 |
| HpyCH4IV | ACGT | 1 cut(s) | 427 |
| HpyCH4V | TGCA | 1 cut(s) | 239 |
| HpyF10VI | GCNNNNNNNGC | 3 cut(s) | 509, 620, 641 |
| HpyF3I | CTNAG | 5 cut(s) | 252, 303, 335, 483, 567 |
| HpySE526I | ACGT | 1 cut(s) | 427 |
| Hsp92II | CATG | 2 cut(s) | 464, 671 |
| HspAI | GCGC | 3 cut(s) | 297, 471, 512 |
| Kzo9I | GATC | 4 cut(s) | 186, 285, 664, 676 |
| LpnPI | CCDG | 7 cut(s) | 80, 87, 264, 333, 342, 441, 590 |
| LweI | GCATC | 1 cut(s) | 184 |
| MaeI | CTAG | 3 cut(s) | 15, 80, 680 |
| MaeII | ACGT | 1 cut(s) | 427 |
| MaeIII | GTNAC | 3 cut(s) | 59, 386, 607 |
| MalI | GATC | 4 cut(s) | 188, 287, 666, 678 |
| MboI | GATC | 4 cut(s) | 186, 285, 664, 676 |
| MboII | GAAGA | 7 cut(s) | 50, 223, 429, 611, 674, 683, 686 |
| MflI | RGATCY | 1 cut(s) | 676 |
| MhlI | GDGCHC | 2 cut(s) | 580, 595 |
| MlsI | TGGCCA | 1 cut(s) | 459 |
| MluCI | AATT | 1 cut(s) | 170 |
| MluNI | TGGCCA | 1 cut(s) | 459 |
| MlyI | GAGTC | 2 cut(s) | 56, 208 |
| MnlI | CCTC | 7 cut(s) | 22, 401, 413, 433, 437, 463, 525 |
| Mox20I | TGGCCA | 1 cut(s) | 459 |
| MroXI | GAANNNNTTC | 1 cut(s) | 147 |
| MscI | TGGCCA | 1 cut(s) | 459 |
| MseI | TTAA | 2 cut(s) | 156, 164 |
| MslI | CAYNNNNRTG | 1 cut(s) | 495 |
| Msp20I | TGGCCA | 1 cut(s) | 459 |
| MvnI | CGCG | 1 cut(s) | 297 |
| MwoI | GCNNNNNNNGC | 3 cut(s) | 509, 620, 641 |
| NdeII | GATC | 4 cut(s) | 186, 285, 664, 676 |
| NlaIII | CATG | 2 cut(s) | 464, 671 |
| NlaIV | GGNNCC | 2 cut(s) | 314, 413 |
| NmuCI | GTSAC | 2 cut(s) | 59, 607 |
| PagI | TCATGA | 1 cut(s) | 667 |
| PdmI | GAANNNNTTC | 1 cut(s) | 147 |
| PfeI | GAWTC | 1 cut(s) | 264 |
| PleI | GAGTC | 2 cut(s) | 56, 208 |
| PpsI | GAGTC | 2 cut(s) | 56, 208 |
| Psp124BI | GAGCTC | 1 cut(s) | 595 |
| PspEI | GGTNACC | 2 cut(s) | 386, 607 |
| PspN4I | GGNNCC | 2 cut(s) | 314, 413 |
| PspPI | GGNCC | 2 cut(s) | 312, 359 |
| PsuI | RGATCY | 1 cut(s) | 676 |
| RseI | CAYNNNNRTG | 1 cut(s) | 495 |
| SacI | GAGCTC | 1 cut(s) | 595 |
| SaqAI | TTAA | 2 cut(s) | 156, 164 |
| Sau3AI | GATC | 4 cut(s) | 186, 285, 664, 676 |
| Sau96I | GGNCC | 2 cut(s) | 312, 359 |
| SchI | GAGTC | 2 cut(s) | 56, 208 |
| SduI | GDGCHC | 2 cut(s) | 580, 595 |
| SetI | ASST | 9 cut(s) | 14, 81, 227, 388, 393, 424, 430, 595, 646 |
| SfaNI | GCATC | 1 cut(s) | 184 |
| SfcI | CTRYAG | 1 cut(s) | 276 |
| SinI | GGWCC | 1 cut(s) | 359 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 495 |
| Sse9I | AATT | 1 cut(s) | 170 |
| SsiI | CCGC | 2 cut(s) | 103, 612 |
| SspI | AATATT | 1 cut(s) | 271 |
| SspMI | CTAG | 3 cut(s) | 15, 80, 680 |
| SstI | GAGCTC | 1 cut(s) | 595 |
| TaiI | ACGT | 1 cut(s) | 430 |
| TaqI | TCGA | 4 cut(s) | 36, 262, 531, 553 |
| TasI | AATT | 1 cut(s) | 170 |
| TfiI | GAWTC | 1 cut(s) | 264 |
| Tru1I | TTAA | 2 cut(s) | 156, 164 |
| Tru9I | TTAA | 2 cut(s) | 156, 164 |
| TseFI | GTSAC | 2 cut(s) | 59, 607 |
| Tsp45I | GTSAC | 2 cut(s) | 59, 607 |
| TspDTI | ATGAA | 2 cut(s) | 17, 684 |
| TspGWI | ACGGA | 3 cut(s) | 47, 298, 424 |
| VpaK11BI | GGWCC | 1 cut(s) | 359 |
| XagI | CCTNNNNNAGG | 1 cut(s) | 16 |
| XapI | RAATTY | 1 cut(s) | 170 |
| XbaI | TCTAGA | 2 cut(s) | 14, 679 |
| XmnI | GAANNNNTTC | 1 cut(s) | 147 |
| XspI | CTAG | 3 cut(s) | 15, 80, 680 |