gag-polypeptide of LTR copia-type
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccB1I | GGYRCC | 1 cut(s) | 389 |
| AciI | CCGC | 2 cut(s) | 79, 310 |
| AcoI | YGGCCR | 1 cut(s) | 376 |
| AcyI | GRCGYC | 2 cut(s) | 516, 528 |
| AfaI | GTAC | 1 cut(s) | 248 |
| AfiI | CCNNNNNNNGG | 2 cut(s) | 490, 494 |
| AgsI | TTSAA | 1 cut(s) | 427 |
| AjiI | CACGTC | 1 cut(s) | 136 |
| AjnI | CCWGG | 1 cut(s) | 129 |
| AluBI | AGCT | 3 cut(s) | 155, 161, 284 |
| AluI | AGCT | 3 cut(s) | 155, 161, 284 |
| Alw26I | GTCTC | 1 cut(s) | 438 |
| AoxI | GGCC | 2 cut(s) | 93, 376 |
| ApeKI | GCWGC | 2 cut(s) | 179, 560 |
| AspA2I | CCTAGG | 1 cut(s) | 488 |
| AsuHPI | GGTGA | 3 cut(s) | 551, 559, 566 |
| AsuII | TTCGAA | 1 cut(s) | 580 |
| AsuNHI | GCTAGC | 1 cut(s) | 280 |
| AvrII | CCTAGG | 1 cut(s) | 488 |
| BalI | TGGCCA | 1 cut(s) | 378 |
| BanI | GGYRCC | 1 cut(s) | 389 |
| BauI | CACGAG | 1 cut(s) | 119 |
| BbsI | GAAGAC | 1 cut(s) | 273 |
| BbvI | GCAGC | 2 cut(s) | 191, 547 |
| BccI | CCATC | 6 cut(s) | 92, 215, 417, 455, 518, 540 |
| BcgI | CGANNNNNNTGC | 2 cut(s) | 103, 137 |
| BciT130I | CCWGG | 1 cut(s) | 131 |
| BciVI | GTATCC | 1 cut(s) | 103 |
| BcoDI | GTCTC | 1 cut(s) | 438 |
| BfaI | CTAG | 3 cut(s) | 126, 281, 489 |
| BfuI | GTATCC | 1 cut(s) | 103 |
| BglI | GCCNNNNNGGC | 1 cut(s) | 188 |
| BisI | GCNGC | 2 cut(s) | 180, 561 |
| BlnI | CCTAGG | 1 cut(s) | 488 |
| BlsI | GCNGC | 2 cut(s) | 181, 562 |
| Bme1390I | CCNGG | 1 cut(s) | 131 |
| BmgBI | CACGTC | 1 cut(s) | 136 |
| BmiI | GGNNCC | 1 cut(s) | 391 |
| BmrFI | CCNGG | 1 cut(s) | 131 |
| BmrI | ACTGGG | 1 cut(s) | 44 |
| BmsI | GCATC | 2 cut(s) | 94, 547 |
| BmtI | GCTAGC | 1 cut(s) | 284 |
| BmuI | ACTGGG | 1 cut(s) | 44 |
| BpiI | GAAGAC | 1 cut(s) | 273 |
| BpmI | CTGGAG | 1 cut(s) | 227 |
| Bpu14I | TTCGAA | 1 cut(s) | 580 |
| BpuEI | CTTGAG | 2 cut(s) | 74, 141 |
| BsaHI | GRCGYC | 2 cut(s) | 516, 528 |
| BsaJI | CCNNGG | 3 cut(s) | 488, 519, 550 |
| Bsc4I | CCNNNNNNNGG | 2 cut(s) | 490, 494 |
| Bse1I | ACTGG | 3 cut(s) | 39, 49, 244 |
| BseBI | CCWGG | 1 cut(s) | 131 |
| BseDI | CCNNGG | 3 cut(s) | 488, 519, 550 |
| BseGI | GGATG | 3 cut(s) | 210, 238, 529 |
| BseLI | CCNNNNNNNGG | 2 cut(s) | 490, 494 |
| BseNI | ACTGG | 3 cut(s) | 39, 49, 244 |
| BseXI | GCAGC | 2 cut(s) | 191, 547 |
| BsgI | GTGCAG | 1 cut(s) | 519 |
| BshFI | GGCC | 2 cut(s) | 95, 378 |
| BshNI | GGYRCC | 1 cut(s) | 389 |
| BslFI | GGGAC | 1 cut(s) | 488 |
| BslI | CCNNNNNNNGG | 2 cut(s) | 490, 494 |
| BsmAI | GTCTC | 1 cut(s) | 438 |
| BsmBI | CGTCTC | 1 cut(s) | 438 |
| BsmFI | GGGAC | 1 cut(s) | 488 |
| BsnI | GGCC | 2 cut(s) | 95, 378 |
| Bsp119I | TTCGAA | 1 cut(s) | 580 |
| Bsp19I | CCATGG | 1 cut(s) | 519 |
| BspACI | CCGC | 2 cut(s) | 79, 310 |
| BspANI | GGCC | 2 cut(s) | 95, 378 |
| BspLI | GGNNCC | 1 cut(s) | 391 |
| BspOI | GCTAGC | 1 cut(s) | 284 |
| BspT104I | TTCGAA | 1 cut(s) | 580 |
| BspT107I | GGYRCC | 1 cut(s) | 389 |
| BsrI | ACTGG | 3 cut(s) | 39, 49, 244 |
| BssECI | CCNNGG | 3 cut(s) | 488, 519, 550 |
| BssNI | GRCGYC | 2 cut(s) | 516, 528 |
| BssSI | CACGAG | 1 cut(s) | 119 |
| BssT1I | CCWWGG | 3 cut(s) | 488, 519, 550 |
| Bst2BI | CACGAG | 1 cut(s) | 119 |
| Bst2UI | CCWGG | 1 cut(s) | 131 |
| Bst4CI | ACNGT | 1 cut(s) | 145 |
| Bst6I | CTCTTC | 1 cut(s) | 331 |
| BstACI | GRCGYC | 2 cut(s) | 516, 528 |
| BstBI | TTCGAA | 1 cut(s) | 580 |
| BstC8I | GCNNGC | 3 cut(s) | 83, 153, 282 |
| BstDEI | CTNAG | 1 cut(s) | 184 |
| BstDSI | CCRYGG | 1 cut(s) | 519 |
| BstEII | GGTNACC | 1 cut(s) | 305 |
| BstF5I | GGATG | 3 cut(s) | 210, 238, 529 |
| BstMAI | GTCTC | 1 cut(s) | 438 |
| BstMWI | GCNNNNNNNGC | 5 cut(s) | 167, 176, 188, 197, 428 |
| BstNI | CCWGG | 1 cut(s) | 131 |
| BstPI | GGTNACC | 1 cut(s) | 305 |
| BstSCI | CCNGG | 1 cut(s) | 129 |
| BstV1I | GCAGC | 2 cut(s) | 191, 547 |
| BstV2I | GAAGAC | 1 cut(s) | 273 |
| BstXI | CCANNNNNNTGG | 1 cut(s) | 386 |
| BsuI | GTATCC | 1 cut(s) | 103 |
| BsuRI | GGCC | 2 cut(s) | 95, 378 |
| BtgI | CCRYGG | 1 cut(s) | 519 |
| BtrI | CACGTC | 1 cut(s) | 136 |
| BtsCI | GGATG | 3 cut(s) | 210, 238, 529 |
| BtsI | GCAGTG | 1 cut(s) | 465 |
| BtsIMutI | CAGTG | 2 cut(s) | 32, 465 |
| Cac8I | GCNNGC | 3 cut(s) | 83, 153, 282 |
| CseI | GACGC | 4 cut(s) | 420, 428, 517, 524 |
| Csp6I | GTAC | 1 cut(s) | 247 |
| CviAII | CATG | 4 cut(s) | 380, 512, 520, 536 |
| CviQI | GTAC | 1 cut(s) | 247 |
| DdeI | CTNAG | 1 cut(s) | 184 |
| EaeI | YGGCCR | 1 cut(s) | 376 |
| Eam1104I | CTCTTC | 1 cut(s) | 331 |
| EarI | CTCTTC | 1 cut(s) | 331 |
| EciI | GGCGGA | 1 cut(s) | 68 |
| Eco130I | CCWWGG | 3 cut(s) | 488, 519, 550 |
| Eco32I | GATATC | 1 cut(s) | 76 |
| Eco91I | GGTNACC | 1 cut(s) | 305 |
| EcoO65I | GGTNACC | 1 cut(s) | 305 |
| EcoRII | CCWGG | 1 cut(s) | 129 |
| EcoRV | GATATC | 1 cut(s) | 76 |
| EcoT14I | CCWWGG | 3 cut(s) | 488, 519, 550 |
| ErhI | CCWWGG | 3 cut(s) | 488, 519, 550 |
| Esp3I | CGTCTC | 1 cut(s) | 438 |
| FaeI | CATG | 4 cut(s) | 383, 515, 523, 539 |
| FaiI | YATR | 8 cut(s) | 228, 230, 257, 381, 513, 521, 537, 586 |
| FaqI | GGGAC | 1 cut(s) | 488 |
| FatI | CATG | 4 cut(s) | 379, 511, 519, 535 |
| FauNDI | CATATG | 1 cut(s) | 228 |
| Fnu4HI | GCNGC | 2 cut(s) | 180, 561 |
| FokI | GGATG | 3 cut(s) | 197, 245, 536 |
| Fsp4HI | GCNGC | 2 cut(s) | 180, 561 |
| FspBI | CTAG | 3 cut(s) | 126, 281, 489 |
| GluI | GCNGC | 2 cut(s) | 180, 561 |
| GsuI | CTGGAG | 1 cut(s) | 227 |
| HaeIII | GGCC | 2 cut(s) | 95, 378 |
| HgaI | GACGC | 4 cut(s) | 420, 428, 517, 524 |
| Hin1I | GRCGYC | 2 cut(s) | 516, 528 |
| Hin1II | CATG | 4 cut(s) | 383, 515, 523, 539 |
| HindIII | AAGCTT | 1 cut(s) | 159 |
| HinfI | GANTC | 6 cut(s) | 102, 115, 220, 236, 259, 331 |
| HphI | GGTGA | 3 cut(s) | 551, 559, 566 |
| Hpy166II | GTNNAC | 2 cut(s) | 344, 478 |
| Hpy188I | TCNGA | 1 cut(s) | 52 |
| Hpy188III | TCNNGA | 2 cut(s) | 71, 263 |
| Hpy8I | GTNNAC | 2 cut(s) | 344, 478 |
| HpyAV | CCTTC | 2 cut(s) | 270, 296 |
| HpyCH4III | ACNGT | 1 cut(s) | 145 |
| HpyCH4IV | ACGT | 2 cut(s) | 135, 346 |
| HpyCH4V | TGCA | 2 cut(s) | 500, 563 |
| HpyF10VI | GCNNNNNNNGC | 5 cut(s) | 167, 176, 188, 197, 428 |
| HpyF3I | CTNAG | 1 cut(s) | 184 |
| HpySE526I | ACGT | 2 cut(s) | 135, 346 |
| Hsp92I | GRCGYC | 2 cut(s) | 516, 528 |
| Hsp92II | CATG | 4 cut(s) | 383, 515, 523, 539 |
| LmnI | GCTCC | 2 cut(s) | 34, 246 |
| Lsp1109I | GCAGC | 2 cut(s) | 191, 547 |
| LweI | GCATC | 2 cut(s) | 94, 547 |
| MaeI | CTAG | 3 cut(s) | 126, 281, 489 |
| MaeII | ACGT | 2 cut(s) | 135, 346 |
| MaeIII | GTNAC | 2 cut(s) | 5, 305 |
| MboII | GAAGA | 2 cut(s) | 278, 348 |
| MlsI | TGGCCA | 1 cut(s) | 378 |
| MluCI | AATT | 1 cut(s) | 17 |
| MluNI | TGGCCA | 1 cut(s) | 378 |
| MlyI | GAGTC | 1 cut(s) | 214 |
| MnlI | CCTC | 6 cut(s) | 181, 332, 352, 356, 382, 481 |
| Mox20I | TGGCCA | 1 cut(s) | 378 |
| MscI | TGGCCA | 1 cut(s) | 378 |
| MseI | TTAA | 1 cut(s) | 402 |
| MslI | CAYNNNNRTG | 5 cut(s) | 215, 231, 384, 414, 537 |
| Msp20I | TGGCCA | 1 cut(s) | 378 |
| MspR9I | CCNGG | 1 cut(s) | 131 |
| MvaI | CCWGG | 1 cut(s) | 131 |
| MwoI | GCNNNNNNNGC | 5 cut(s) | 167, 176, 188, 197, 428 |
| NcoI | CCATGG | 1 cut(s) | 519 |
| NdeI | CATATG | 1 cut(s) | 228 |
| NheI | GCTAGC | 1 cut(s) | 280 |
| NlaIII | CATG | 4 cut(s) | 383, 515, 523, 539 |
| NlaIV | GGNNCC | 1 cut(s) | 391 |
| NspV | TTCGAA | 1 cut(s) | 580 |
| PfeI | GAWTC | 5 cut(s) | 102, 115, 236, 259, 331 |
| PkrI | GCNGC | 2 cut(s) | 181, 562 |
| PleI | GAGTC | 1 cut(s) | 214 |
| PpsI | GAGTC | 1 cut(s) | 214 |
| Psp6I | CCWGG | 1 cut(s) | 129 |
| PspEI | GGTNACC | 1 cut(s) | 305 |
| PspGI | CCWGG | 1 cut(s) | 129 |
| PspN4I | GGNNCC | 1 cut(s) | 391 |
| RsaI | GTAC | 1 cut(s) | 248 |
| RsaNI | GTAC | 1 cut(s) | 247 |
| RseI | CAYNNNNRTG | 5 cut(s) | 215, 231, 384, 414, 537 |
| SaqAI | TTAA | 1 cut(s) | 402 |
| SatI | GCNGC | 2 cut(s) | 180, 561 |
| SchI | GAGTC | 1 cut(s) | 214 |
| ScrFI | CCNGG | 1 cut(s) | 131 |
| SfaNI | GCATC | 2 cut(s) | 94, 547 |
| SfuI | TTCGAA | 1 cut(s) | 580 |
| SmiMI | CAYNNNNRTG | 5 cut(s) | 215, 231, 384, 414, 537 |
| SmlI | CTYRAG | 2 cut(s) | 89, 156 |
| SmoI | CTYRAG | 2 cut(s) | 89, 156 |
| Sse9I | AATT | 1 cut(s) | 17 |
| SsiI | CCGC | 2 cut(s) | 79, 310 |
| SspMI | CTAG | 3 cut(s) | 126, 281, 489 |
| StyD4I | CCNGG | 1 cut(s) | 129 |
| StyI | CCWWGG | 3 cut(s) | 488, 519, 550 |
| TaaI | ACNGT | 1 cut(s) | 145 |
| TaiI | ACGT | 2 cut(s) | 138, 349 |
| TaqI | TCGA | 3 cut(s) | 334, 450, 580 |
| TasI | AATT | 1 cut(s) | 17 |
| TfiI | GAWTC | 5 cut(s) | 102, 115, 236, 259, 331 |
| Tru1I | TTAA | 1 cut(s) | 402 |
| Tru9I | TTAA | 1 cut(s) | 402 |
| TscAI | CASTG | 2 cut(s) | 39, 472 |
| TseI | GCWGC | 2 cut(s) | 179, 560 |
| TspDTI | ATGAA | 1 cut(s) | 272 |
| TspGWI | ACGGA | 2 cut(s) | 343, 463 |
| TspRI | CASTG | 2 cut(s) | 39, 472 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 491 |
| XmaJI | CCTAGG | 1 cut(s) | 488 |
| XspI | CTAG | 3 cut(s) | 126, 281, 489 |