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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| Acc36I | ACCTGC | 1 cut(s) | 735 |
| AccB1I | GGYRCC | 1 cut(s) | 767 |
| AccII | CGCG | 1 cut(s) | 669 |
| AciI | CCGC | 1 cut(s) | 361 |
| AclWI | GGATC | 3 cut(s) | 452, 551, 759 |
| AcsI | RAATTY | 1 cut(s) | 428 |
| AcyI | GRCGYC | 2 cut(s) | 819, 831 |
| AfiI | CCNNNNNNNGG | 2 cut(s) | 793, 797 |
| AgsI | TTSAA | 2 cut(s) | 376, 884 |
| AjiI | CACGTC | 1 cut(s) | 136 |
| AjnI | CCWGG | 1 cut(s) | 747 |
| AjuI | GAANNNNNNNTTGG | 2 cut(s) | 288, 320 |
| AleI | CACNNNNGTG | 1 cut(s) | 720 |
| AluBI | AGCT | 3 cut(s) | 155, 161, 562 |
| AluI | AGCT | 3 cut(s) | 155, 161, 562 |
| Alw21I | GWGCWC | 1 cut(s) | 564 |
| Alw26I | GTCTC | 1 cut(s) | 292 |
| AlwI | GGATC | 3 cut(s) | 452, 551, 759 |
| Ama87I | CYCGRG | 1 cut(s) | 119 |
| AoxI | GGCC | 1 cut(s) | 93 |
| ApeKI | GCWGC | 2 cut(s) | 533, 863 |
| ApoI | RAATTY | 1 cut(s) | 428 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 405 |
| AspA2I | CCTAGG | 2 cut(s) | 791, 853 |
| AspLEI | GCGC | 2 cut(s) | 671, 803 |
| AsuC2I | CCSGG | 1 cut(s) | 131 |
| AsuHPI | GGTGA | 7 cut(s) | 679, 691, 707, 734, 854, 862, 869 |
| AvaI | CYCGRG | 1 cut(s) | 119 |
| AvrII | CCTAGG | 2 cut(s) | 791, 853 |
| BaeGI | GKGCMC | 2 cut(s) | 748, 762 |
| BanI | GGYRCC | 1 cut(s) | 767 |
| BanII | GRGCYC | 1 cut(s) | 564 |
| BbsI | GAAGAC | 1 cut(s) | 476 |
| Bbv12I | GWGCWC | 1 cut(s) | 564 |
| BbvI | GCAGC | 2 cut(s) | 520, 850 |
| BccI | CCATC | 9 cut(s) | 92, 215, 342, 496, 497, 525, 785, 821, 839 |
| BcgI | CGANNNNNNTGC | 2 cut(s) | 515, 549 |
| BciT130I | CCWGG | 1 cut(s) | 749 |
| BcnI | CCSGG | 1 cut(s) | 131 |
| BcoDI | GTCTC | 1 cut(s) | 292 |
| BfaI | CTAG | 5 cut(s) | 107, 126, 338, 792, 854 |
| BfmI | CTRYAG | 2 cut(s) | 534, 728 |
| BfuAI | ACCTGC | 1 cut(s) | 735 |
| BisI | GCNGC | 2 cut(s) | 534, 864 |
| BlnI | CCTAGG | 2 cut(s) | 791, 853 |
| BlsI | GCNGC | 2 cut(s) | 535, 865 |
| Bme1390I | CCNGG | 2 cut(s) | 131, 749 |
| BmeT110I | CYCGRG | 1 cut(s) | 119 |
| BmgBI | CACGTC | 1 cut(s) | 136 |
| BmiI | GGNNCC | 2 cut(s) | 402, 769 |
| BmrFI | CCNGG | 2 cut(s) | 131, 749 |
| BmsI | GCATC | 2 cut(s) | 94, 850 |
| BpiI | GAAGAC | 1 cut(s) | 476 |
| BpmI | CTGGAG | 1 cut(s) | 227 |
| BpuEI | CTTGAG | 2 cut(s) | 74, 141 |
| BpuMI | CCSGG | 1 cut(s) | 131 |
| BsaHI | GRCGYC | 2 cut(s) | 819, 831 |
| BsaI | GGTCTC | 1 cut(s) | 292 |
| BsaJI | CCNNGG | 5 cut(s) | 718, 747, 791, 822, 853 |
| Bsc4I | CCNNNNNNNGG | 2 cut(s) | 793, 797 |
| Bse1I | ACTGG | 4 cut(s) | 49, 244, 690, 702 |
| BseBI | CCWGG | 1 cut(s) | 749 |
| BseDI | CCNNGG | 5 cut(s) | 718, 747, 791, 822, 853 |
| BseGI | GGATG | 5 cut(s) | 210, 238, 600, 777, 832 |
| BseLI | CCNNNNNNNGG | 2 cut(s) | 793, 797 |
| BseNI | ACTGG | 4 cut(s) | 49, 244, 690, 702 |
| BseSI | GKGCMC | 2 cut(s) | 748, 762 |
| BseXI | GCAGC | 2 cut(s) | 520, 850 |
| Bsh1236I | CGCG | 1 cut(s) | 669 |
| BshFI | GGCC | 1 cut(s) | 95 |
| BshNI | GGYRCC | 1 cut(s) | 767 |
| BsiHKAI | GWGCWC | 1 cut(s) | 564 |
| BsiHKCI | CYCGRG | 1 cut(s) | 119 |
| BsiSI | CCGG | 1 cut(s) | 131 |
| BslFI | GGGAC | 1 cut(s) | 791 |
| BslI | CCNNNNNNNGG | 2 cut(s) | 793, 797 |
| BsmAI | GTCTC | 1 cut(s) | 292 |
| BsmFI | GGGAC | 1 cut(s) | 791 |
| BsnI | GGCC | 1 cut(s) | 95 |
| Bso31I | GGTCTC | 1 cut(s) | 292 |
| BsoBI | CYCGRG | 1 cut(s) | 119 |
| Bsp1286I | GDGCHC | 3 cut(s) | 564, 748, 762 |
| Bsp143I | GATC | 4 cut(s) | 444, 543, 626, 751 |
| Bsp19I | CCATGG | 2 cut(s) | 718, 822 |
| BspACI | CCGC | 1 cut(s) | 361 |
| BspANI | GGCC | 1 cut(s) | 95 |
| BspFNI | CGCG | 1 cut(s) | 669 |
| BspHI | TCATGA | 2 cut(s) | 70, 556 |
| BspLI | GGNNCC | 2 cut(s) | 402, 769 |
| BspMAI | CTGCAG | 2 cut(s) | 538, 732 |
| BspMI | ACCTGC | 1 cut(s) | 735 |
| BspPI | GGATC | 3 cut(s) | 452, 551, 759 |
| BspT107I | GGYRCC | 1 cut(s) | 767 |
| BspTNI | GGTCTC | 1 cut(s) | 292 |
| BsrI | ACTGG | 4 cut(s) | 49, 244, 690, 702 |
| BssECI | CCNNGG | 5 cut(s) | 718, 747, 791, 822, 853 |
| BssMI | GATC | 4 cut(s) | 444, 543, 626, 751 |
| BssNI | GRCGYC | 2 cut(s) | 819, 831 |
| BssT1I | CCWWGG | 4 cut(s) | 718, 791, 822, 853 |
| Bst2UI | CCWGG | 1 cut(s) | 749 |
| Bst4CI | ACNGT | 2 cut(s) | 145, 764 |
| BstACI | GRCGYC | 2 cut(s) | 819, 831 |
| BstC8I | GCNNGC | 3 cut(s) | 83, 153, 799 |
| BstDEI | CTNAG | 3 cut(s) | 184, 510, 675 |
| BstDSI | CCRYGG | 2 cut(s) | 718, 822 |
| BstEII | GGTNACC | 3 cut(s) | 697, 713, 722 |
| BstF5I | GGATG | 5 cut(s) | 210, 238, 600, 777, 832 |
| BstFNI | CGCG | 1 cut(s) | 669 |
| BstHHI | GCGC | 2 cut(s) | 671, 803 |
| BstKTI | GATC | 4 cut(s) | 447, 546, 629, 754 |
| BstMAI | GTCTC | 1 cut(s) | 292 |
| BstMBI | GATC | 4 cut(s) | 444, 543, 626, 751 |
| BstMWI | GCNNNNNNNGC | 3 cut(s) | 167, 176, 197 |
| BstNI | CCWGG | 1 cut(s) | 749 |
| BstPI | GGTNACC | 3 cut(s) | 697, 713, 722 |
| BstSCI | CCNGG | 2 cut(s) | 129, 747 |
| BstSFI | CTRYAG | 2 cut(s) | 534, 728 |
| BstSLI | GKGCMC | 2 cut(s) | 748, 762 |
| BstUI | CGCG | 1 cut(s) | 669 |
| BstV1I | GCAGC | 2 cut(s) | 520, 850 |
| BstV2I | GAAGAC | 1 cut(s) | 476 |
| BstXI | CCANNNNNNTGG | 1 cut(s) | 709 |
| BsuRI | GGCC | 1 cut(s) | 95 |
| BtgI | CCRYGG | 2 cut(s) | 718, 822 |
| BtrI | CACGTC | 1 cut(s) | 136 |
| BtsCI | GGATG | 5 cut(s) | 210, 238, 600, 777, 832 |
| BtsIMutI | CAGTG | 3 cut(s) | 636, 709, 769 |
| BveI | ACCTGC | 1 cut(s) | 735 |
| Cac8I | GCNNGC | 3 cut(s) | 83, 153, 799 |
| CciI | TCATGA | 2 cut(s) | 70, 556 |
| CfoI | GCGC | 2 cut(s) | 671, 803 |
| CseI | GACGC | 2 cut(s) | 820, 827 |
| CviAII | CATG | 6 cut(s) | 71, 557, 593, 719, 815, 823 |
| DdeI | CTNAG | 3 cut(s) | 184, 510, 675 |
| DpnI | GATC | 4 cut(s) | 446, 545, 628, 753 |
| DpnII | GATC | 4 cut(s) | 444, 543, 626, 751 |
| Ecl136II | GAGCTC | 1 cut(s) | 562 |
| Eco130I | CCWWGG | 4 cut(s) | 718, 791, 822, 853 |
| Eco24I | GRGCYC | 1 cut(s) | 564 |
| Eco31I | GGTCTC | 1 cut(s) | 292 |
| Eco53kI | GAGCTC | 1 cut(s) | 562 |
| Eco88I | CYCGRG | 1 cut(s) | 119 |
| Eco91I | GGTNACC | 3 cut(s) | 697, 713, 722 |
| EcoICRI | GAGCTC | 1 cut(s) | 562 |
| EcoO65I | GGTNACC | 3 cut(s) | 697, 713, 722 |
| EcoRI | GAATTC | 1 cut(s) | 428 |
| EcoRII | CCWGG | 1 cut(s) | 747 |
| EcoT14I | CCWWGG | 4 cut(s) | 718, 791, 822, 853 |
| EcoT38I | GRGCYC | 1 cut(s) | 564 |
| ErhI | CCWWGG | 4 cut(s) | 718, 791, 822, 853 |
| FaeI | CATG | 6 cut(s) | 74, 560, 596, 722, 818, 826 |
| FaqI | GGGAC | 1 cut(s) | 791 |
| FatI | CATG | 6 cut(s) | 70, 556, 592, 718, 814, 822 |
| FauNDI | CATATG | 1 cut(s) | 228 |
| Fnu4HI | GCNGC | 2 cut(s) | 534, 864 |
| FokI | GGATG | 5 cut(s) | 197, 245, 587, 764, 839 |
| FriOI | GRGCYC | 1 cut(s) | 564 |
| Fsp4HI | GCNGC | 2 cut(s) | 534, 864 |
| FspBI | CTAG | 5 cut(s) | 107, 126, 338, 792, 854 |
| GlaI | GCGC | 2 cut(s) | 670, 802 |
| GluI | GCNGC | 2 cut(s) | 534, 864 |
| GsuI | CTGGAG | 1 cut(s) | 227 |
| HaeIII | GGCC | 1 cut(s) | 95 |
| HapII | CCGG | 1 cut(s) | 131 |
| HgaI | GACGC | 2 cut(s) | 820, 827 |
| HhaI | GCGC | 2 cut(s) | 671, 803 |
| Hin1I | GRCGYC | 2 cut(s) | 819, 831 |
| Hin1II | CATG | 6 cut(s) | 74, 560, 596, 722, 818, 826 |
| Hin6I | GCGC | 2 cut(s) | 669, 801 |
| HinP1I | GCGC | 2 cut(s) | 669, 801 |
| HindIII | AAGCTT | 1 cut(s) | 159 |
| HinfI | GANTC | 8 cut(s) | 102, 115, 220, 236, 320, 472, 522, 653 |
| HpaII | CCGG | 1 cut(s) | 131 |
| HphI | GGTGA | 7 cut(s) | 679, 691, 707, 734, 854, 862, 869 |
| Hpy166II | GTNNAC | 1 cut(s) | 687 |
| Hpy188I | TCNGA | 1 cut(s) | 400 |
| Hpy188III | TCNNGA | 6 cut(s) | 71, 119, 332, 557, 624, 650 |
| Hpy8I | GTNNAC | 1 cut(s) | 687 |
| Hpy99I | CGWCG | 1 cut(s) | 530 |
| HpyAV | CCTTC | 2 cut(s) | 270, 493 |
| HpyCH4III | ACNGT | 2 cut(s) | 145, 764 |
| HpyCH4IV | ACGT | 3 cut(s) | 135, 312, 528 |
| HpyCH4V | TGCA | 4 cut(s) | 497, 536, 730, 866 |
| HpyF10VI | GCNNNNNNNGC | 3 cut(s) | 167, 176, 197 |
| HpyF3I | CTNAG | 3 cut(s) | 184, 510, 675 |
| HpySE526I | ACGT | 3 cut(s) | 135, 312, 528 |
| Hsp92I | GRCGYC | 2 cut(s) | 819, 831 |
| Hsp92II | CATG | 6 cut(s) | 74, 560, 596, 722, 818, 826 |
| HspAI | GCGC | 2 cut(s) | 669, 801 |
| Kzo9I | GATC | 4 cut(s) | 444, 543, 626, 751 |
| LmnI | GCTCC | 2 cut(s) | 34, 246 |
| Lsp1109I | GCAGC | 2 cut(s) | 520, 850 |
| LweI | GCATC | 2 cut(s) | 94, 850 |
| MaeI | CTAG | 5 cut(s) | 107, 126, 338, 792, 854 |
| MaeII | ACGT | 3 cut(s) | 135, 312, 528 |
| MaeIII | GTNAC | 5 cut(s) | 5, 317, 697, 713, 722 |
| MalI | GATC | 4 cut(s) | 446, 545, 628, 753 |
| MboI | GATC | 4 cut(s) | 444, 543, 626, 751 |
| MboII | GAAGA | 3 cut(s) | 308, 481, 622 |
| MhlI | GDGCHC | 3 cut(s) | 564, 748, 762 |
| MluCI | AATT | 4 cut(s) | 394, 428, 619, 658 |
| MlyI | GAGTC | 3 cut(s) | 214, 314, 466 |
| MnlI | CCTC | 3 cut(s) | 181, 368, 784 |
| MroXI | GAANNNNTTC | 1 cut(s) | 405 |
| MseI | TTAA | 2 cut(s) | 414, 422 |
| MslI | CAYNNNNRTG | 5 cut(s) | 215, 231, 605, 720, 840 |
| MspI | CCGG | 1 cut(s) | 131 |
| MspR9I | CCNGG | 2 cut(s) | 131, 749 |
| MvaI | CCWGG | 1 cut(s) | 749 |
| MvnI | CGCG | 1 cut(s) | 669 |
| MwoI | GCNNNNNNNGC | 3 cut(s) | 167, 176, 197 |
| NciI | CCSGG | 1 cut(s) | 131 |
| NcoI | CCATGG | 2 cut(s) | 718, 822 |
| NdeI | CATATG | 1 cut(s) | 228 |
| NdeII | GATC | 4 cut(s) | 444, 543, 626, 751 |
| NlaIII | CATG | 6 cut(s) | 74, 560, 596, 722, 818, 826 |
| NlaIV | GGNNCC | 2 cut(s) | 402, 769 |
| NmuCI | GTSAC | 4 cut(s) | 317, 697, 713, 722 |
| OliI | CACNNNNGTG | 1 cut(s) | 720 |
| PaeR7I | CTCGAG | 1 cut(s) | 119 |
| PagI | TCATGA | 2 cut(s) | 70, 556 |
| PdmI | GAANNNNTTC | 1 cut(s) | 405 |
| PfeI | GAWTC | 5 cut(s) | 102, 115, 236, 522, 653 |
| PkrI | GCNGC | 2 cut(s) | 535, 865 |
| PleI | GAGTC | 3 cut(s) | 214, 314, 466 |
| PpsI | GAGTC | 3 cut(s) | 214, 314, 466 |
| Psp124BI | GAGCTC | 1 cut(s) | 564 |
| Psp6I | CCWGG | 1 cut(s) | 747 |
| PspEI | GGTNACC | 3 cut(s) | 697, 713, 722 |
| PspGI | CCWGG | 1 cut(s) | 747 |
| PspN4I | GGNNCC | 2 cut(s) | 402, 769 |
| PstI | CTGCAG | 2 cut(s) | 538, 732 |
| RseI | CAYNNNNRTG | 5 cut(s) | 215, 231, 605, 720, 840 |
| SacI | GAGCTC | 1 cut(s) | 564 |
| SaqAI | TTAA | 2 cut(s) | 414, 422 |
| SatI | GCNGC | 2 cut(s) | 534, 864 |
| Sau3AI | GATC | 4 cut(s) | 444, 543, 626, 751 |
| SchI | GAGTC | 3 cut(s) | 214, 314, 466 |
| ScrFI | CCNGG | 2 cut(s) | 131, 749 |
| SduI | GDGCHC | 3 cut(s) | 564, 748, 762 |
| SfaNI | GCATC | 2 cut(s) | 94, 850 |
| SfcI | CTRYAG | 2 cut(s) | 534, 728 |
| Sfr274I | CTCGAG | 1 cut(s) | 119 |
| SlaI | CTCGAG | 1 cut(s) | 119 |
| SmiMI | CAYNNNNRTG | 5 cut(s) | 215, 231, 605, 720, 840 |
| SmlI | CTYRAG | 3 cut(s) | 89, 119, 156 |
| SmoI | CTYRAG | 3 cut(s) | 89, 119, 156 |
| Sse9I | AATT | 4 cut(s) | 394, 428, 619, 658 |
| SsiI | CCGC | 1 cut(s) | 361 |
| SspMI | CTAG | 5 cut(s) | 107, 126, 338, 792, 854 |
| SstI | GAGCTC | 1 cut(s) | 564 |
| StyD4I | CCNGG | 2 cut(s) | 129, 747 |
| StyI | CCWWGG | 4 cut(s) | 718, 791, 822, 853 |
| TaaI | ACNGT | 2 cut(s) | 145, 764 |
| TaiI | ACGT | 3 cut(s) | 138, 315, 531 |
| TaqI | TCGA | 6 cut(s) | 120, 294, 455, 520, 525, 623 |
| TasI | AATT | 4 cut(s) | 394, 428, 619, 658 |
| TfiI | GAWTC | 5 cut(s) | 102, 115, 236, 522, 653 |
| Tru1I | TTAA | 2 cut(s) | 414, 422 |
| Tru9I | TTAA | 2 cut(s) | 414, 422 |
| TscAI | CASTG | 3 cut(s) | 636, 709, 769 |
| TseFI | GTSAC | 4 cut(s) | 317, 697, 713, 722 |
| TseI | GCWGC | 2 cut(s) | 533, 863 |
| Tsp45I | GTSAC | 4 cut(s) | 317, 697, 713, 722 |
| TspDTI | ATGAA | 4 cut(s) | 59, 276, 545, 590 |
| TspGWI | ACGGA | 2 cut(s) | 305, 556 |
| TspRI | CASTG | 3 cut(s) | 636, 709, 769 |
| XapI | RAATTY | 1 cut(s) | 428 |
| XcmI | CCANNNNNNNNNTGG | 2 cut(s) | 794, 842 |
| XhoI | CTCGAG | 1 cut(s) | 119 |
| XmaJI | CCTAGG | 2 cut(s) | 791, 853 |
| XmnI | GAANNNNTTC | 1 cut(s) | 405 |
| XspI | CTAG | 5 cut(s) | 107, 126, 338, 792, 854 |