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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccB1I | GGYRCC | 1 cut(s) | 386 |
| AccBSI | CCGCTC | 1 cut(s) | 218 |
| AccII | CGCG | 1 cut(s) | 132 |
| AciI | CCGC | 2 cut(s) | 218, 409 |
| AcvI | CACGTG | 2 cut(s) | 307, 325 |
| AdeI | CACNNNGTG | 2 cut(s) | 310, 424 |
| AfaI | GTAC | 1 cut(s) | 222 |
| AfeI | AGCGCT | 2 cut(s) | 63, 74 |
| AfiI | CCNNNNNNNGG | 4 cut(s) | 19, 196, 326, 400 |
| AflIII | ACRYGT | 2 cut(s) | 304, 322 |
| AgsI | TTSAA | 3 cut(s) | 112, 119, 147 |
| AjuI | GAANNNNNNNTTGG | 2 cut(s) | 60, 92 |
| AluBI | AGCT | 2 cut(s) | 52, 174 |
| AluI | AGCT | 2 cut(s) | 52, 174 |
| Alw21I | GWGCWC | 2 cut(s) | 420, 429 |
| Alw44I | GTGCAC | 2 cut(s) | 416, 425 |
| Aor51HI | AGCGCT | 2 cut(s) | 63, 74 |
| AoxI | GGCC | 2 cut(s) | 9, 253 |
| ApaI | GGGCCC | 1 cut(s) | 257 |
| ApaLI | GTGCAC | 2 cut(s) | 416, 425 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 175 |
| AspA2I | CCTAGG | 1 cut(s) | 398 |
| AspLEI | GCGC | 4 cut(s) | 64, 75, 134, 211 |
| AspS9I | GGNCC | 3 cut(s) | 10, 253, 254 |
| AsuII | TTCGAA | 1 cut(s) | 169 |
| AvrII | CCTAGG | 1 cut(s) | 398 |
| BaeGI | GKGCMC | 3 cut(s) | 257, 420, 429 |
| BanI | GGYRCC | 1 cut(s) | 386 |
| BanII | GRGCYC | 1 cut(s) | 257 |
| BbrPI | CACGTG | 2 cut(s) | 307, 325 |
| Bbv12I | GWGCWC | 2 cut(s) | 420, 429 |
| BceAI | ACGGC | 1 cut(s) | 339 |
| BciVI | GTATCC | 2 cut(s) | 294, 356 |
| BfaI | CTAG | 3 cut(s) | 65, 351, 399 |
| BfoI | RGCGCY | 2 cut(s) | 65, 76 |
| BfuI | GTATCC | 2 cut(s) | 294, 356 |
| BisI | GCNGC | 1 cut(s) | 409 |
| BlnI | CCTAGG | 1 cut(s) | 398 |
| BlsI | GCNGC | 1 cut(s) | 410 |
| BmgT120I | GGNCC | 3 cut(s) | 10, 253, 254 |
| BmiI | GGNNCC | 2 cut(s) | 255, 388 |
| Bpu14I | TTCGAA | 1 cut(s) | 169 |
| BsaAI | YACGTR | 2 cut(s) | 307, 325 |
| BsaJI | CCNNGG | 2 cut(s) | 13, 398 |
| BsaWI | WCCGGW | 1 cut(s) | 273 |
| BsaXI | ACNNNNNCTCC | 4 cut(s) | 14, 44, 379, 409 |
| Bsc4I | CCNNNNNNNGG | 4 cut(s) | 19, 196, 326, 400 |
| Bse3DI | GCAATG | 1 cut(s) | 88 |
| BseDI | CCNNGG | 2 cut(s) | 13, 398 |
| BseLI | CCNNNNNNNGG | 4 cut(s) | 19, 196, 326, 400 |
| BseMI | GCAATG | 1 cut(s) | 88 |
| BseRI | GAGGAG | 1 cut(s) | 89 |
| BseSI | GKGCMC | 3 cut(s) | 257, 420, 429 |
| Bsh1236I | CGCG | 1 cut(s) | 132 |
| BshFI | GGCC | 2 cut(s) | 11, 255 |
| BshNI | GGYRCC | 1 cut(s) | 386 |
| BsiHKAI | GWGCWC | 2 cut(s) | 420, 429 |
| BsiSI | CCGG | 1 cut(s) | 274 |
| BslFI | GGGAC | 1 cut(s) | 249 |
| BslI | CCNNNNNNNGG | 4 cut(s) | 19, 196, 326, 400 |
| BsmFI | GGGAC | 1 cut(s) | 249 |
| BsnI | GGCC | 2 cut(s) | 11, 255 |
| Bsp119I | TTCGAA | 1 cut(s) | 169 |
| Bsp120I | GGGCCC | 1 cut(s) | 253 |
| Bsp1286I | GDGCHC | 3 cut(s) | 257, 420, 429 |
| Bsp143I | GATC | 1 cut(s) | 33 |
| BspACI | CCGC | 2 cut(s) | 218, 409 |
| BspANI | GGCC | 2 cut(s) | 11, 255 |
| BspFNI | CGCG | 1 cut(s) | 132 |
| BspLI | GGNNCC | 2 cut(s) | 255, 388 |
| BspQI | GCTCTTC | 2 cut(s) | 63, 181 |
| BspT104I | TTCGAA | 1 cut(s) | 169 |
| BspT107I | GGYRCC | 1 cut(s) | 386 |
| BsrBI | CCGCTC | 1 cut(s) | 218 |
| BsrDI | GCAATG | 1 cut(s) | 88 |
| BssECI | CCNNGG | 2 cut(s) | 13, 398 |
| BssMI | GATC | 1 cut(s) | 33 |
| BssT1I | CCWWGG | 1 cut(s) | 398 |
| Bst4CI | ACNGT | 1 cut(s) | 187 |
| Bst6I | CTCTTC | 2 cut(s) | 63, 181 |
| BstAPI | GCANNNNNTGC | 1 cut(s) | 424 |
| BstBAI | YACGTR | 2 cut(s) | 307, 325 |
| BstBI | TTCGAA | 1 cut(s) | 169 |
| BstFNI | CGCG | 1 cut(s) | 132 |
| BstH2I | RGCGCY | 2 cut(s) | 65, 76 |
| BstHHI | GCGC | 4 cut(s) | 64, 75, 134, 211 |
| BstKTI | GATC | 1 cut(s) | 36 |
| BstMBI | GATC | 1 cut(s) | 33 |
| BstMWI | GCNNNNNNNGC | 3 cut(s) | 70, 215, 424 |
| BstSLI | GKGCMC | 3 cut(s) | 257, 420, 429 |
| BstUI | CGCG | 1 cut(s) | 132 |
| BstXI | CCANNNNNNTGG | 1 cut(s) | 292 |
| BsuI | GTATCC | 2 cut(s) | 294, 356 |
| BsuRI | GGCC | 2 cut(s) | 11, 255 |
| CfoI | GCGC | 4 cut(s) | 64, 75, 134, 211 |
| Cfr13I | GGNCC | 3 cut(s) | 10, 253, 254 |
| Csp6I | GTAC | 1 cut(s) | 221 |
| CviAII | CATG | 2 cut(s) | 191, 239 |
| CviJI | RGCY | 6 cut(s) | 11, 52, 174, 255, 354, 366 |
| CviKI_1 | RGCY | 6 cut(s) | 11, 52, 174, 255, 354, 366 |
| CviQI | GTAC | 1 cut(s) | 221 |
| DpnI | GATC | 1 cut(s) | 35 |
| DpnII | GATC | 1 cut(s) | 33 |
| DraIII | CACNNNGTG | 2 cut(s) | 310, 424 |
| Eam1104I | CTCTTC | 2 cut(s) | 63, 181 |
| EarI | CTCTTC | 2 cut(s) | 63, 181 |
| Eco130I | CCWWGG | 1 cut(s) | 398 |
| Eco24I | GRGCYC | 1 cut(s) | 257 |
| Eco47III | AGCGCT | 2 cut(s) | 63, 74 |
| Eco72I | CACGTG | 2 cut(s) | 307, 325 |
| EcoO109I | RGGNCCY | 1 cut(s) | 10 |
| EcoT14I | CCWWGG | 1 cut(s) | 398 |
| EcoT38I | GRGCYC | 1 cut(s) | 257 |
| ErhI | CCWWGG | 1 cut(s) | 398 |
| FaeI | CATG | 2 cut(s) | 194, 242 |
| FaqI | GGGAC | 1 cut(s) | 249 |
| FatI | CATG | 2 cut(s) | 190, 238 |
| Fnu4HI | GCNGC | 1 cut(s) | 409 |
| FriOI | GRGCYC | 1 cut(s) | 257 |
| Fsp4HI | GCNGC | 1 cut(s) | 409 |
| FspBI | CTAG | 3 cut(s) | 65, 351, 399 |
| GlaI | GCGC | 4 cut(s) | 63, 74, 133, 210 |
| GluI | GCNGC | 1 cut(s) | 409 |
| HaeII | RGCGCY | 2 cut(s) | 65, 76 |
| HaeIII | GGCC | 2 cut(s) | 11, 255 |
| HapII | CCGG | 1 cut(s) | 274 |
| HhaI | GCGC | 4 cut(s) | 64, 75, 134, 211 |
| Hin1II | CATG | 2 cut(s) | 194, 242 |
| Hin6I | GCGC | 4 cut(s) | 62, 73, 132, 209 |
| HinP1I | GCGC | 4 cut(s) | 62, 73, 132, 209 |
| HinfI | GANTC | 1 cut(s) | 92 |
| HpaII | CCGG | 1 cut(s) | 274 |
| Hpy166II | GTNNAC | 2 cut(s) | 418, 427 |
| Hpy188I | TCNGA | 1 cut(s) | 17 |
| Hpy8I | GTNNAC | 2 cut(s) | 418, 427 |
| HpyAV | CCTTC | 3 cut(s) | 106, 236, 271 |
| HpyCH4III | ACNGT | 1 cut(s) | 187 |
| HpyCH4IV | ACGT | 5 cut(s) | 247, 306, 324, 414, 423 |
| HpyCH4V | TGCA | 3 cut(s) | 44, 418, 427 |
| HpyF10VI | GCNNNNNNNGC | 3 cut(s) | 70, 215, 424 |
| HpySE526I | ACGT | 5 cut(s) | 247, 306, 324, 414, 423 |
| Hsp92II | CATG | 2 cut(s) | 194, 242 |
| HspAI | GCGC | 4 cut(s) | 62, 73, 132, 209 |
| Kzo9I | GATC | 1 cut(s) | 33 |
| LguI | GCTCTTC | 2 cut(s) | 63, 181 |
| LmnI | GCTCC | 1 cut(s) | 215 |
| LpnPI | CCDG | 1 cut(s) | 287 |
| MaeI | CTAG | 3 cut(s) | 65, 351, 399 |
| MaeII | ACGT | 5 cut(s) | 247, 306, 324, 414, 423 |
| MalI | GATC | 1 cut(s) | 35 |
| MbiI | CCGCTC | 1 cut(s) | 218 |
| MboI | GATC | 1 cut(s) | 33 |
| MboII | GAAGA | 2 cut(s) | 80, 168 |
| MhlI | GDGCHC | 3 cut(s) | 257, 420, 429 |
| MluCI | AATT | 2 cut(s) | 165, 433 |
| MnlI | CCTC | 7 cut(s) | 23, 107, 110, 190, 198, 325, 405 |
| MroXI | GAANNNNTTC | 1 cut(s) | 175 |
| MseI | TTAA | 1 cut(s) | 436 |
| MslI | CAYNNNNRTG | 1 cut(s) | 262 |
| MspI | CCGG | 1 cut(s) | 274 |
| MvnI | CGCG | 1 cut(s) | 132 |
| MwoI | GCNNNNNNNGC | 3 cut(s) | 70, 215, 424 |
| NdeII | GATC | 1 cut(s) | 33 |
| NlaIII | CATG | 2 cut(s) | 194, 242 |
| NlaIV | GGNNCC | 2 cut(s) | 255, 388 |
| NspV | TTCGAA | 1 cut(s) | 169 |
| PciSI | GCTCTTC | 2 cut(s) | 63, 181 |
| PcsI | WCGNNNNNNNCGW | 1 cut(s) | 420 |
| PdmI | GAANNNNTTC | 1 cut(s) | 175 |
| PfeI | GAWTC | 1 cut(s) | 92 |
| PkrI | GCNGC | 1 cut(s) | 410 |
| PmaCI | CACGTG | 2 cut(s) | 307, 325 |
| PmlI | CACGTG | 2 cut(s) | 307, 325 |
| Ppu21I | YACGTR | 2 cut(s) | 307, 325 |
| PspCI | CACGTG | 2 cut(s) | 307, 325 |
| PspN4I | GGNNCC | 2 cut(s) | 255, 388 |
| PspOMI | GGGCCC | 1 cut(s) | 253 |
| PspPI | GGNCC | 3 cut(s) | 10, 253, 254 |
| RsaI | GTAC | 1 cut(s) | 222 |
| RsaNI | GTAC | 1 cut(s) | 221 |
| RseI | CAYNNNNRTG | 1 cut(s) | 262 |
| SapI | GCTCTTC | 2 cut(s) | 63, 181 |
| SaqAI | TTAA | 1 cut(s) | 436 |
| SatI | GCNGC | 1 cut(s) | 409 |
| Sau3AI | GATC | 1 cut(s) | 33 |
| Sau96I | GGNCC | 3 cut(s) | 10, 253, 254 |
| SduI | GDGCHC | 3 cut(s) | 257, 420, 429 |
| SfuI | TTCGAA | 1 cut(s) | 169 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 262 |
| Sse9I | AATT | 2 cut(s) | 165, 433 |
| SsiI | CCGC | 2 cut(s) | 218, 409 |
| SspMI | CTAG | 3 cut(s) | 65, 351, 399 |
| StyI | CCWWGG | 1 cut(s) | 398 |
| TaaI | ACNGT | 1 cut(s) | 187 |
| TaiI | ACGT | 5 cut(s) | 250, 309, 327, 417, 426 |
| TaqI | TCGA | 3 cut(s) | 32, 158, 169 |
| TasI | AATT | 2 cut(s) | 165, 433 |
| TauI | GCSGC | 1 cut(s) | 411 |
| TfiI | GAWTC | 1 cut(s) | 92 |
| Tru1I | TTAA | 1 cut(s) | 436 |
| Tru9I | TTAA | 1 cut(s) | 436 |
| TspDTI | ATGAA | 1 cut(s) | 255 |
| TspGWI | ACGGA | 1 cut(s) | 141 |
| VneI | GTGCAC | 2 cut(s) | 416, 425 |
| XmaJI | CCTAGG | 1 cut(s) | 398 |
| XmnI | GAANNNNTTC | 1 cut(s) | 175 |
| XspI | CTAG | 3 cut(s) | 65, 351, 399 |