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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AasI | GACNNNNNNGTC | 1 cut(s) | 660 |
| AccB7I | CCANNNNNTGG | 1 cut(s) | 671 |
| AciI | CCGC | 3 cut(s) | 79, 694, 915 |
| AclWI | GGATC | 2 cut(s) | 551, 621 |
| AcoI | YGGCCR | 1 cut(s) | 760 |
| AcsI | RAATTY | 1 cut(s) | 102 |
| AdeI | CACNNNGTG | 1 cut(s) | 955 |
| AfaI | GTAC | 1 cut(s) | 248 |
| AfiI | CCNNNNNNNGG | 1 cut(s) | 671 |
| AgsI | TTSAA | 2 cut(s) | 624, 811 |
| AjnI | CCWGG | 1 cut(s) | 129 |
| AluBI | AGCT | 6 cut(s) | 155, 161, 572, 815, 896, 947 |
| AluI | AGCT | 6 cut(s) | 155, 161, 572, 815, 896, 947 |
| Alw21I | GWGCWC | 1 cut(s) | 898 |
| Alw26I | GTCTC | 4 cut(s) | 182, 292, 362, 496 |
| AlwI | GGATC | 2 cut(s) | 551, 621 |
| Ama87I | CYCGRG | 1 cut(s) | 119 |
| AoxI | GGCC | 3 cut(s) | 93, 704, 760 |
| ApeKI | GCWGC | 1 cut(s) | 179 |
| ApoI | RAATTY | 1 cut(s) | 102 |
| AseI | ATTAAT | 1 cut(s) | 500 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 405 |
| AspS9I | GGNCC | 1 cut(s) | 662 |
| AsuHPI | GGTGA | 3 cut(s) | 202, 782, 904 |
| AvaI | CYCGRG | 1 cut(s) | 119 |
| AvaII | GGWCC | 1 cut(s) | 662 |
| BaeGI | GKGCMC | 1 cut(s) | 883 |
| BalI | TGGCCA | 1 cut(s) | 762 |
| BanII | GRGCYC | 1 cut(s) | 898 |
| BauI | CACGAG | 1 cut(s) | 897 |
| BbsI | GAAGAC | 3 cut(s) | 273, 476, 972 |
| Bbv12I | GWGCWC | 1 cut(s) | 898 |
| BbvI | GCAGC | 1 cut(s) | 191 |
| BccI | CCATC | 4 cut(s) | 92, 215, 342, 801 |
| BcgI | CGANNNNNNTGC | 2 cut(s) | 515, 549 |
| BciT130I | CCWGG | 1 cut(s) | 131 |
| BciVI | GTATCC | 2 cut(s) | 103, 637 |
| BcoDI | GTCTC | 4 cut(s) | 182, 292, 362, 496 |
| BfaI | CTAG | 4 cut(s) | 338, 510, 870, 983 |
| BfmI | CTRYAG | 1 cut(s) | 534 |
| BfuI | GTATCC | 2 cut(s) | 103, 637 |
| BisI | GCNGC | 1 cut(s) | 180 |
| BlsI | GCNGC | 1 cut(s) | 181 |
| Bme1390I | CCNGG | 1 cut(s) | 131 |
| Bme18I | GGWCC | 1 cut(s) | 662 |
| BmeT110I | CYCGRG | 1 cut(s) | 119 |
| BmgT120I | GGNCC | 1 cut(s) | 662 |
| BmiI | GGNNCC | 1 cut(s) | 716 |
| BmrFI | CCNGG | 1 cut(s) | 131 |
| BmsI | GCATC | 1 cut(s) | 793 |
| BpiI | GAAGAC | 3 cut(s) | 273, 476, 972 |
| BpmI | CTGGAG | 1 cut(s) | 227 |
| BpuEI | CTTGAG | 2 cut(s) | 74, 141 |
| Bsa29I | ATCGAT | 1 cut(s) | 525 |
| BsaI | GGTCTC | 1 cut(s) | 292 |
| BsaJI | CCNNGG | 1 cut(s) | 630 |
| Bsc4I | CCNNNNNNNGG | 1 cut(s) | 671 |
| Bse1I | ACTGG | 1 cut(s) | 244 |
| BseBI | CCWGG | 1 cut(s) | 131 |
| BseCI | ATCGAT | 1 cut(s) | 525 |
| BseDI | CCNNGG | 1 cut(s) | 630 |
| BseGI | GGATG | 1 cut(s) | 238 |
| BseLI | CCNNNNNNNGG | 1 cut(s) | 671 |
| BseNI | ACTGG | 1 cut(s) | 244 |
| BseRI | GAGGAG | 2 cut(s) | 350, 807 |
| BseSI | GKGCMC | 1 cut(s) | 883 |
| BseXI | GCAGC | 1 cut(s) | 191 |
| BshFI | GGCC | 3 cut(s) | 95, 706, 762 |
| BshVI | ATCGAT | 1 cut(s) | 525 |
| BsiHKAI | GWGCWC | 1 cut(s) | 898 |
| BsiHKCI | CYCGRG | 1 cut(s) | 119 |
| BslI | CCNNNNNNNGG | 1 cut(s) | 671 |
| BsmAI | GTCTC | 4 cut(s) | 182, 292, 362, 496 |
| BsmBI | CGTCTC | 1 cut(s) | 496 |
| BsmI | GAATGC | 1 cut(s) | 457 |
| BsnI | GGCC | 3 cut(s) | 95, 706, 762 |
| Bso31I | GGTCTC | 1 cut(s) | 292 |
| BsoBI | CYCGRG | 1 cut(s) | 119 |
| Bsp1286I | GDGCHC | 2 cut(s) | 883, 898 |
| Bsp143I | GATC | 4 cut(s) | 444, 543, 626, 979 |
| BspACI | CCGC | 3 cut(s) | 79, 694, 915 |
| BspANI | GGCC | 3 cut(s) | 95, 706, 762 |
| BspDI | ATCGAT | 1 cut(s) | 525 |
| BspHI | TCATGA | 1 cut(s) | 556 |
| BspLI | GGNNCC | 1 cut(s) | 716 |
| BspMAI | CTGCAG | 1 cut(s) | 538 |
| BspPI | GGATC | 2 cut(s) | 551, 621 |
| BspTNI | GGTCTC | 1 cut(s) | 292 |
| BsrI | ACTGG | 1 cut(s) | 244 |
| BssECI | CCNNGG | 1 cut(s) | 630 |
| BssMI | GATC | 4 cut(s) | 444, 543, 626, 979 |
| BssSI | CACGAG | 1 cut(s) | 897 |
| Bst2BI | CACGAG | 1 cut(s) | 897 |
| Bst2UI | CCWGG | 1 cut(s) | 131 |
| Bst4CI | ACNGT | 1 cut(s) | 145 |
| Bst6I | CTCTTC | 2 cut(s) | 368, 715 |
| BstC8I | GCNNGC | 1 cut(s) | 153 |
| BstDEI | CTNAG | 2 cut(s) | 184, 786 |
| BstDSI | CCRYGG | 1 cut(s) | 630 |
| BstEII | GGTNACC | 1 cut(s) | 689 |
| BstF5I | GGATG | 1 cut(s) | 238 |
| BstKTI | GATC | 4 cut(s) | 447, 546, 629, 982 |
| BstMAI | GTCTC | 4 cut(s) | 182, 292, 362, 496 |
| BstMBI | GATC | 4 cut(s) | 444, 543, 626, 979 |
| BstMWI | GCNNNNNNNGC | 4 cut(s) | 167, 176, 812, 944 |
| BstNI | CCWGG | 1 cut(s) | 131 |
| BstNSI | RCATGY | 1 cut(s) | 139 |
| BstPI | GGTNACC | 1 cut(s) | 689 |
| BstSCI | CCNGG | 1 cut(s) | 129 |
| BstSFI | CTRYAG | 1 cut(s) | 534 |
| BstSLI | GKGCMC | 1 cut(s) | 883 |
| BstV1I | GCAGC | 1 cut(s) | 191 |
| BstV2I | GAAGAC | 3 cut(s) | 273, 476, 972 |
| BstX2I | RGATCY | 1 cut(s) | 626 |
| BstYI | RGATCY | 1 cut(s) | 626 |
| Bsu15I | ATCGAT | 1 cut(s) | 525 |
| BsuI | GTATCC | 2 cut(s) | 103, 637 |
| BsuRI | GGCC | 3 cut(s) | 95, 706, 762 |
| BsuTUI | ATCGAT | 1 cut(s) | 525 |
| BtgI | CCRYGG | 1 cut(s) | 630 |
| BtgZI | GCGATG | 1 cut(s) | 470 |
| BtsCI | GGATG | 1 cut(s) | 238 |
| Cac8I | GCNNGC | 1 cut(s) | 153 |
| CciI | TCATGA | 1 cut(s) | 556 |
| Cfr13I | GGNCC | 1 cut(s) | 662 |
| ClaI | ATCGAT | 1 cut(s) | 525 |
| Csp6I | GTAC | 1 cut(s) | 247 |
| CspCI | CAANNNNNGTGG | 2 cut(s) | 612, 647 |
| CviAII | CATG | 4 cut(s) | 136, 557, 593, 764 |
| CviQI | GTAC | 1 cut(s) | 247 |
| DdeI | CTNAG | 2 cut(s) | 184, 786 |
| DpnI | GATC | 4 cut(s) | 446, 545, 628, 981 |
| DpnII | GATC | 4 cut(s) | 444, 543, 626, 979 |
| DraIII | CACNNNGTG | 1 cut(s) | 955 |
| DrdI | GACNNNNNNGTC | 1 cut(s) | 660 |
| DseDI | GACNNNNNNGTC | 1 cut(s) | 660 |
| EaeI | YGGCCR | 1 cut(s) | 760 |
| Eam1104I | CTCTTC | 2 cut(s) | 368, 715 |
| EarI | CTCTTC | 2 cut(s) | 368, 715 |
| EciI | GGCGGA | 1 cut(s) | 68 |
| Ecl136II | GAGCTC | 1 cut(s) | 896 |
| Eco24I | GRGCYC | 1 cut(s) | 898 |
| Eco31I | GGTCTC | 1 cut(s) | 292 |
| Eco32I | GATATC | 1 cut(s) | 56 |
| Eco47I | GGWCC | 1 cut(s) | 662 |
| Eco53kI | GAGCTC | 1 cut(s) | 896 |
| Eco88I | CYCGRG | 1 cut(s) | 119 |
| Eco91I | GGTNACC | 1 cut(s) | 689 |
| EcoICRI | GAGCTC | 1 cut(s) | 896 |
| EcoO65I | GGTNACC | 1 cut(s) | 689 |
| EcoRI | GAATTC | 1 cut(s) | 102 |
| EcoRII | CCWGG | 1 cut(s) | 129 |
| EcoRV | GATATC | 1 cut(s) | 56 |
| EcoT38I | GRGCYC | 1 cut(s) | 898 |
| Esp3I | CGTCTC | 1 cut(s) | 496 |
| FaeI | CATG | 4 cut(s) | 139, 560, 596, 767 |
| FatI | CATG | 4 cut(s) | 135, 556, 592, 763 |
| FauNDI | CATATG | 1 cut(s) | 228 |
| Fnu4HI | GCNGC | 1 cut(s) | 180 |
| FokI | GGATG | 1 cut(s) | 245 |
| FriOI | GRGCYC | 1 cut(s) | 898 |
| Fsp4HI | GCNGC | 1 cut(s) | 180 |
| FspBI | CTAG | 4 cut(s) | 338, 510, 870, 983 |
| GluI | GCNGC | 1 cut(s) | 180 |
| GsuI | CTGGAG | 1 cut(s) | 227 |
| HaeIII | GGCC | 3 cut(s) | 95, 706, 762 |
| Hin1II | CATG | 4 cut(s) | 139, 560, 596, 767 |
| HindIII | AAGCTT | 1 cut(s) | 159 |
| HinfI | GANTC | 6 cut(s) | 220, 236, 320, 472, 522, 830 |
| HphI | GGTGA | 3 cut(s) | 202, 782, 904 |
| Hpy166II | GTNNAC | 1 cut(s) | 728 |
| Hpy188I | TCNGA | 2 cut(s) | 400, 835 |
| Hpy8I | GTNNAC | 1 cut(s) | 728 |
| HpyAV | CCTTC | 2 cut(s) | 270, 680 |
| HpyCH4III | ACNGT | 1 cut(s) | 145 |
| HpyCH4IV | ACGT | 3 cut(s) | 312, 655, 730 |
| HpyCH4V | TGCA | 2 cut(s) | 497, 536 |
| HpyF10VI | GCNNNNNNNGC | 4 cut(s) | 167, 176, 812, 944 |
| HpyF3I | CTNAG | 2 cut(s) | 184, 786 |
| HpySE526I | ACGT | 3 cut(s) | 312, 655, 730 |
| Hsp92II | CATG | 4 cut(s) | 139, 560, 596, 767 |
| Kzo9I | GATC | 4 cut(s) | 444, 543, 626, 979 |
| LmnI | GCTCC | 5 cut(s) | 34, 246, 569, 820, 835 |
| Lsp1109I | GCAGC | 1 cut(s) | 191 |
| LweI | GCATC | 1 cut(s) | 793 |
| MaeI | CTAG | 4 cut(s) | 338, 510, 870, 983 |
| MaeII | ACGT | 3 cut(s) | 312, 655, 730 |
| MaeIII | GTNAC | 6 cut(s) | 5, 317, 529, 689, 770, 910 |
| MalI | GATC | 4 cut(s) | 446, 545, 628, 981 |
| MboI | GATC | 4 cut(s) | 444, 543, 626, 979 |
| MboII | GAAGA | 7 cut(s) | 278, 355, 481, 732, 914, 977, 986 |
| MflI | RGATCY | 1 cut(s) | 626 |
| MhlI | GDGCHC | 2 cut(s) | 883, 898 |
| MlsI | TGGCCA | 1 cut(s) | 762 |
| MluCI | AATT | 7 cut(s) | 17, 102, 114, 405, 428, 619, 906 |
| MluNI | TGGCCA | 1 cut(s) | 762 |
| MlyI | GAGTC | 4 cut(s) | 214, 314, 466, 839 |
| MmeI | TCCRAC | 1 cut(s) | 813 |
| MnlI | CCTC | 7 cut(s) | 371, 634, 716, 736, 740, 766, 828 |
| Mox20I | TGGCCA | 1 cut(s) | 762 |
| MroXI | GAANNNNTTC | 1 cut(s) | 405 |
| MscI | TGGCCA | 1 cut(s) | 762 |
| MseI | TTAA | 4 cut(s) | 375, 414, 422, 500 |
| MslI | CAYNNNNRTG | 4 cut(s) | 215, 231, 768, 798 |
| Msp20I | TGGCCA | 1 cut(s) | 762 |
| MspR9I | CCNGG | 1 cut(s) | 131 |
| Mva1269I | GAATGC | 1 cut(s) | 457 |
| MvaI | CCWGG | 1 cut(s) | 131 |
| MwoI | GCNNNNNNNGC | 4 cut(s) | 167, 176, 812, 944 |
| NdeI | CATATG | 1 cut(s) | 228 |
| NdeII | GATC | 4 cut(s) | 444, 543, 626, 979 |
| NlaIII | CATG | 4 cut(s) | 139, 560, 596, 767 |
| NlaIV | GGNNCC | 1 cut(s) | 716 |
| NmuCI | GTSAC | 3 cut(s) | 317, 770, 910 |
| NspI | RCATGY | 1 cut(s) | 139 |
| PaeR7I | CTCGAG | 1 cut(s) | 119 |
| PagI | TCATGA | 1 cut(s) | 556 |
| PctI | GAATGC | 1 cut(s) | 457 |
| PdmI | GAANNNNTTC | 1 cut(s) | 405 |
| PfeI | GAWTC | 2 cut(s) | 236, 522 |
| PflMI | CCANNNNNTGG | 1 cut(s) | 671 |
| PkrI | GCNGC | 1 cut(s) | 181 |
| PleI | GAGTC | 4 cut(s) | 214, 314, 466, 838 |
| PpsI | GAGTC | 4 cut(s) | 214, 314, 466, 838 |
| PshBI | ATTAAT | 1 cut(s) | 500 |
| Psp124BI | GAGCTC | 1 cut(s) | 898 |
| Psp6I | CCWGG | 1 cut(s) | 129 |
| PspEI | GGTNACC | 1 cut(s) | 689 |
| PspGI | CCWGG | 1 cut(s) | 129 |
| PspN4I | GGNNCC | 1 cut(s) | 716 |
| PspPI | GGNCC | 1 cut(s) | 662 |
| PstI | CTGCAG | 1 cut(s) | 538 |
| PsuI | RGATCY | 1 cut(s) | 626 |
| RsaI | GTAC | 1 cut(s) | 248 |
| RsaNI | GTAC | 1 cut(s) | 247 |
| RseI | CAYNNNNRTG | 4 cut(s) | 215, 231, 768, 798 |
| SacI | GAGCTC | 1 cut(s) | 898 |
| SaqAI | TTAA | 4 cut(s) | 375, 414, 422, 500 |
| SatI | GCNGC | 1 cut(s) | 180 |
| Sau3AI | GATC | 4 cut(s) | 444, 543, 626, 979 |
| Sau96I | GGNCC | 1 cut(s) | 662 |
| SchI | GAGTC | 4 cut(s) | 214, 314, 466, 839 |
| ScrFI | CCNGG | 1 cut(s) | 131 |
| SduI | GDGCHC | 2 cut(s) | 883, 898 |
| SfaNI | GCATC | 1 cut(s) | 793 |
| SfcI | CTRYAG | 1 cut(s) | 534 |
| Sfr274I | CTCGAG | 1 cut(s) | 119 |
| SinI | GGWCC | 1 cut(s) | 662 |
| SlaI | CTCGAG | 1 cut(s) | 119 |
| SmiMI | CAYNNNNRTG | 4 cut(s) | 215, 231, 768, 798 |
| SmlI | CTYRAG | 3 cut(s) | 89, 119, 156 |
| SmoI | CTYRAG | 3 cut(s) | 89, 119, 156 |
| Sse9I | AATT | 7 cut(s) | 17, 102, 114, 405, 428, 619, 906 |
| SsiI | CCGC | 3 cut(s) | 79, 694, 915 |
| SspI | AATATT | 1 cut(s) | 929 |
| SspMI | CTAG | 4 cut(s) | 338, 510, 870, 983 |
| SstI | GAGCTC | 1 cut(s) | 898 |
| StyD4I | CCNGG | 1 cut(s) | 129 |
| TaaI | ACNGT | 1 cut(s) | 145 |
| TaiI | ACGT | 3 cut(s) | 315, 658, 733 |
| TaqI | TCGA | 4 cut(s) | 120, 520, 525, 856 |
| TasI | AATT | 7 cut(s) | 17, 102, 114, 405, 428, 619, 906 |
| TfiI | GAWTC | 2 cut(s) | 236, 522 |
| Tru1I | TTAA | 4 cut(s) | 375, 414, 422, 500 |
| Tru9I | TTAA | 4 cut(s) | 375, 414, 422, 500 |
| TseFI | GTSAC | 3 cut(s) | 317, 770, 910 |
| TseI | GCWGC | 1 cut(s) | 179 |
| Tsp45I | GTSAC | 3 cut(s) | 317, 770, 910 |
| TspDTI | ATGAA | 5 cut(s) | 272, 545, 573, 590, 623 |
| TspGWI | ACGGA | 4 cut(s) | 305, 556, 619, 727 |
| Van91I | CCANNNNNTGG | 1 cut(s) | 671 |
| VpaK11BI | GGWCC | 1 cut(s) | 662 |
| VspI | ATTAAT | 1 cut(s) | 500 |
| XapI | RAATTY | 1 cut(s) | 102 |
| XbaI | TCTAGA | 1 cut(s) | 982 |
| XceI | RCATGY | 1 cut(s) | 139 |
| XhoI | CTCGAG | 1 cut(s) | 119 |
| XmnI | GAANNNNTTC | 1 cut(s) | 405 |
| XspI | CTAG | 4 cut(s) | 338, 510, 870, 983 |