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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| Acc16I | TGCGCA | 1 cut(s) | 29 |
| AciI | CCGC | 1 cut(s) | 41 |
| AcsI | RAATTY | 1 cut(s) | 246 |
| AfaI | GTAC | 3 cut(s) | 8, 150, 440 |
| AgsI | TTSAA | 1 cut(s) | 159 |
| AjnI | CCWGG | 1 cut(s) | 321 |
| AleI | CACNNNNGTG | 1 cut(s) | 35 |
| AluBI | AGCT | 3 cut(s) | 169, 347, 353 |
| AluI | AGCT | 3 cut(s) | 169, 347, 353 |
| Ama87I | CYCGRG | 1 cut(s) | 311 |
| ApeKI | GCWGC | 7 cut(s) | 11, 19, 56, 75, 85, 93, 371 |
| ApoI | RAATTY | 1 cut(s) | 246 |
| AspLEI | GCGC | 1 cut(s) | 30 |
| AvaI | CYCGRG | 1 cut(s) | 311 |
| BbsI | GAAGAC | 1 cut(s) | 465 |
| BbvI | GCAGC | 6 cut(s) | 31, 62, 68, 97, 105, 383 |
| BccI | CCATC | 1 cut(s) | 284 |
| BcgI | CGANNNNNNTGC | 2 cut(s) | 82, 116 |
| BciT130I | CCWGG | 1 cut(s) | 323 |
| BfaI | CTAG | 2 cut(s) | 318, 465 |
| BfmI | CTRYAG | 3 cut(s) | 17, 54, 83 |
| BglI | GCCNNNNNGGC | 1 cut(s) | 380 |
| BglII | AGATCT | 1 cut(s) | 143 |
| BisI | GCNGC | 8 cut(s) | 12, 20, 41, 57, 76, 86, 94, 372 |
| BlsI | GCNGC | 8 cut(s) | 13, 21, 42, 58, 77, 87, 95, 373 |
| Bme1390I | CCNGG | 1 cut(s) | 323 |
| BmeT110I | CYCGRG | 1 cut(s) | 311 |
| BmiI | GGNNCC | 1 cut(s) | 122 |
| BmrFI | CCNGG | 1 cut(s) | 323 |
| BmsI | GCATC | 1 cut(s) | 286 |
| BpiI | GAAGAC | 1 cut(s) | 465 |
| BpmI | CTGGAG | 1 cut(s) | 419 |
| BpuEI | CTTGAG | 2 cut(s) | 266, 333 |
| Bse1I | ACTGG | 1 cut(s) | 436 |
| Bse3DI | GCAATG | 1 cut(s) | 59 |
| BseBI | CCWGG | 1 cut(s) | 323 |
| BseGI | GGATG | 3 cut(s) | 331, 402, 430 |
| BseMI | GCAATG | 1 cut(s) | 59 |
| BseNI | ACTGG | 1 cut(s) | 436 |
| BseXI | GCAGC | 6 cut(s) | 31, 62, 68, 97, 105, 383 |
| BsgI | GTGCAG | 1 cut(s) | 131 |
| BsiHKCI | CYCGRG | 1 cut(s) | 311 |
| BsiWI | CGTACG | 1 cut(s) | 6 |
| BsoBI | CYCGRG | 1 cut(s) | 311 |
| Bsp1407I | TGTACA | 1 cut(s) | 148 |
| Bsp143I | GATC | 3 cut(s) | 114, 143, 240 |
| BspACI | CCGC | 1 cut(s) | 41 |
| BspLI | GGNNCC | 1 cut(s) | 122 |
| BspMAI | CTGCAG | 3 cut(s) | 21, 58, 87 |
| BsrDI | GCAATG | 1 cut(s) | 59 |
| BsrGI | TGTACA | 1 cut(s) | 148 |
| BsrI | ACTGG | 1 cut(s) | 436 |
| BssMI | GATC | 3 cut(s) | 114, 143, 240 |
| Bst2UI | CCWGG | 1 cut(s) | 323 |
| Bst4CI | ACNGT | 2 cut(s) | 153, 337 |
| BstAPI | GCANNNNNTGC | 1 cut(s) | 25 |
| BstAUI | TGTACA | 1 cut(s) | 148 |
| BstC8I | GCNNGC | 5 cut(s) | 73, 98, 179, 211, 345 |
| BstDEI | CTNAG | 1 cut(s) | 376 |
| BstF5I | GGATG | 3 cut(s) | 331, 402, 430 |
| BstHHI | GCGC | 1 cut(s) | 30 |
| BstKTI | GATC | 3 cut(s) | 117, 146, 243 |
| BstMBI | GATC | 3 cut(s) | 114, 143, 240 |
| BstMWI | GCNNNNNNNGC | 7 cut(s) | 25, 56, 118, 359, 368, 380, 389 |
| BstNI | CCWGG | 1 cut(s) | 323 |
| BstNSI | RCATGY | 1 cut(s) | 181 |
| BstSCI | CCNGG | 1 cut(s) | 321 |
| BstSFI | CTRYAG | 3 cut(s) | 17, 54, 83 |
| BstV1I | GCAGC | 6 cut(s) | 31, 62, 68, 97, 105, 383 |
| BstV2I | GAAGAC | 1 cut(s) | 465 |
| BstX2I | RGATCY | 1 cut(s) | 143 |
| BstYI | RGATCY | 1 cut(s) | 143 |
| BtsCI | GGATG | 3 cut(s) | 331, 402, 430 |
| Cac8I | GCNNGC | 5 cut(s) | 73, 98, 179, 211, 345 |
| CfoI | GCGC | 1 cut(s) | 30 |
| Csp6I | GTAC | 3 cut(s) | 7, 149, 439 |
| CviAII | CATG | 1 cut(s) | 178 |
| CviQI | GTAC | 3 cut(s) | 7, 149, 439 |
| DdeI | CTNAG | 1 cut(s) | 376 |
| DpnI | GATC | 3 cut(s) | 116, 145, 242 |
| DpnII | GATC | 3 cut(s) | 114, 143, 240 |
| Eco88I | CYCGRG | 1 cut(s) | 311 |
| EcoRII | CCWGG | 1 cut(s) | 321 |
| FaeI | CATG | 1 cut(s) | 181 |
| FaiI | YATR | 7 cut(s) | 179, 195, 305, 420, 422, 447, 449 |
| FatI | CATG | 1 cut(s) | 177 |
| FauNDI | CATATG | 1 cut(s) | 420 |
| Fnu4HI | GCNGC | 8 cut(s) | 12, 20, 41, 57, 76, 86, 94, 372 |
| FokI | GGATG | 3 cut(s) | 338, 389, 437 |
| Fsp4HI | GCNGC | 8 cut(s) | 12, 20, 41, 57, 76, 86, 94, 372 |
| FspBI | CTAG | 2 cut(s) | 318, 465 |
| FspI | TGCGCA | 1 cut(s) | 29 |
| GlaI | GCGC | 1 cut(s) | 29 |
| GluI | GCNGC | 8 cut(s) | 12, 20, 41, 57, 76, 86, 94, 372 |
| GsuI | CTGGAG | 1 cut(s) | 419 |
| HhaI | GCGC | 1 cut(s) | 30 |
| Hin1II | CATG | 1 cut(s) | 181 |
| Hin6I | GCGC | 1 cut(s) | 28 |
| HinP1I | GCGC | 1 cut(s) | 28 |
| HindIII | AAGCTT | 1 cut(s) | 351 |
| HinfI | GANTC | 4 cut(s) | 294, 307, 412, 428 |
| Hpy188I | TCNGA | 2 cut(s) | 240, 482 |
| Hpy188III | TCNNGA | 1 cut(s) | 311 |
| HpyAV | CCTTC | 2 cut(s) | 264, 462 |
| HpyCH4III | ACNGT | 2 cut(s) | 153, 337 |
| HpyCH4V | TGCA | 6 cut(s) | 19, 56, 85, 112, 193, 209 |
| HpyF10VI | GCNNNNNNNGC | 7 cut(s) | 25, 56, 118, 359, 368, 380, 389 |
| HpyF3I | CTNAG | 1 cut(s) | 376 |
| Hsp92II | CATG | 1 cut(s) | 181 |
| HspAI | GCGC | 1 cut(s) | 28 |
| Kzo9I | GATC | 3 cut(s) | 114, 143, 240 |
| LmnI | GCTCC | 3 cut(s) | 126, 166, 438 |
| LpnPI | CCDG | 9 cut(s) | 29, 66, 85, 95, 103, 201, 308, 335, 449 |
| Lsp1109I | GCAGC | 6 cut(s) | 31, 62, 68, 97, 105, 383 |
| LweI | GCATC | 1 cut(s) | 286 |
| MaeI | CTAG | 2 cut(s) | 318, 465 |
| MalI | GATC | 3 cut(s) | 116, 145, 242 |
| MboI | GATC | 3 cut(s) | 114, 143, 240 |
| MboII | GAAGA | 3 cut(s) | 242, 467, 470 |
| MflI | RGATCY | 1 cut(s) | 143 |
| MluCI | AATT | 1 cut(s) | 246 |
| MlyI | GAGTC | 1 cut(s) | 406 |
| MnlI | CCTC | 3 cut(s) | 75, 283, 373 |
| MslI | CAYNNNNRTG | 3 cut(s) | 35, 407, 423 |
| MspR9I | CCNGG | 1 cut(s) | 323 |
| MvaI | CCWGG | 1 cut(s) | 323 |
| MwoI | GCNNNNNNNGC | 7 cut(s) | 25, 56, 118, 359, 368, 380, 389 |
| NdeI | CATATG | 1 cut(s) | 420 |
| NdeII | GATC | 3 cut(s) | 114, 143, 240 |
| NlaIII | CATG | 1 cut(s) | 181 |
| NlaIV | GGNNCC | 1 cut(s) | 122 |
| NsbI | TGCGCA | 1 cut(s) | 29 |
| NspI | RCATGY | 1 cut(s) | 181 |
| OliI | CACNNNNGTG | 1 cut(s) | 35 |
| PaeI | GCATGC | 1 cut(s) | 181 |
| PaeR7I | CTCGAG | 1 cut(s) | 311 |
| PfeI | GAWTC | 3 cut(s) | 294, 307, 428 |
| Pfl23II | CGTACG | 1 cut(s) | 6 |
| PkrI | GCNGC | 8 cut(s) | 13, 21, 42, 58, 77, 87, 95, 373 |
| PleI | GAGTC | 1 cut(s) | 406 |
| PpsI | GAGTC | 1 cut(s) | 406 |
| Psp6I | CCWGG | 1 cut(s) | 321 |
| PspGI | CCWGG | 1 cut(s) | 321 |
| PspLI | CGTACG | 1 cut(s) | 6 |
| PspN4I | GGNNCC | 1 cut(s) | 122 |
| PstI | CTGCAG | 3 cut(s) | 21, 58, 87 |
| PsuI | RGATCY | 1 cut(s) | 143 |
| RsaI | GTAC | 3 cut(s) | 8, 150, 440 |
| RsaNI | GTAC | 3 cut(s) | 7, 149, 439 |
| RseI | CAYNNNNRTG | 3 cut(s) | 35, 407, 423 |
| SatI | GCNGC | 8 cut(s) | 12, 20, 41, 57, 76, 86, 94, 372 |
| Sau3AI | GATC | 3 cut(s) | 114, 143, 240 |
| SchI | GAGTC | 1 cut(s) | 406 |
| ScrFI | CCNGG | 1 cut(s) | 323 |
| SetI | ASST | 4 cut(s) | 164, 171, 349, 355 |
| SfaNI | GCATC | 1 cut(s) | 286 |
| SfcI | CTRYAG | 3 cut(s) | 17, 54, 83 |
| Sfr274I | CTCGAG | 1 cut(s) | 311 |
| SlaI | CTCGAG | 1 cut(s) | 311 |
| SmiMI | CAYNNNNRTG | 3 cut(s) | 35, 407, 423 |
| SmlI | CTYRAG | 3 cut(s) | 281, 311, 348 |
| SmoI | CTYRAG | 3 cut(s) | 281, 311, 348 |
| SphI | GCATGC | 1 cut(s) | 181 |
| Sse9I | AATT | 1 cut(s) | 246 |
| SsiI | CCGC | 1 cut(s) | 41 |
| SspMI | CTAG | 2 cut(s) | 318, 465 |
| StyD4I | CCNGG | 1 cut(s) | 321 |
| TaaI | ACNGT | 2 cut(s) | 153, 337 |
| TaqI | TCGA | 1 cut(s) | 312 |
| TasI | AATT | 1 cut(s) | 246 |
| TatI | WGTACW | 1 cut(s) | 148 |
| TauI | GCSGC | 1 cut(s) | 43 |
| TfiI | GAWTC | 3 cut(s) | 294, 307, 428 |
| TseI | GCWGC | 7 cut(s) | 11, 19, 56, 75, 85, 93, 371 |
| TspDTI | ATGAA | 3 cut(s) | 246, 464, 468 |
| XapI | RAATTY | 1 cut(s) | 246 |
| XceI | RCATGY | 1 cut(s) | 181 |
| XhoI | CTCGAG | 1 cut(s) | 311 |
| XspI | CTAG | 2 cut(s) | 318, 465 |