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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AasI | GACNNNNNNGTC | 1 cut(s) | 513 |
| AccB1I | GGYRCC | 1 cut(s) | 353 |
| AccII | CGCG | 3 cut(s) | 23, 416, 453 |
| AccIII | TCCGGA | 1 cut(s) | 433 |
| AciI | CCGC | 2 cut(s) | 414, 416 |
| AfaI | GTAC | 2 cut(s) | 38, 168 |
| AfiI | CCNNNNNNNGG | 1 cut(s) | 46 |
| AgsI | TTSAA | 1 cut(s) | 160 |
| AjnI | CCWGG | 1 cut(s) | 502 |
| AluBI | AGCT | 2 cut(s) | 346, 368 |
| AluI | AGCT | 2 cut(s) | 346, 368 |
| Alw26I | GTCTC | 1 cut(s) | 280 |
| Ama87I | CYCGRG | 1 cut(s) | 77 |
| Aor13HI | TCCGGA | 1 cut(s) | 433 |
| ArsI | GACNNNNNNTTYG | 2 cut(s) | 422, 454 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 189 |
| AspLEI | GCGC | 2 cut(s) | 25, 455 |
| AspS9I | GGNCC | 1 cut(s) | 515 |
| AvaI | CYCGRG | 1 cut(s) | 77 |
| AvaII | GGWCC | 1 cut(s) | 515 |
| BanI | GGYRCC | 1 cut(s) | 353 |
| BbsI | GAAGAC | 2 cut(s) | 57, 260 |
| BccI | CCATC | 2 cut(s) | 126, 202 |
| BciT130I | CCWGG | 1 cut(s) | 504 |
| BclI | TGATCA | 1 cut(s) | 246 |
| BcoDI | GTCTC | 1 cut(s) | 280 |
| BfaI | CTAG | 2 cut(s) | 321, 408 |
| Bme1390I | CCNGG | 1 cut(s) | 504 |
| Bme18I | GGWCC | 1 cut(s) | 515 |
| BmeT110I | CYCGRG | 1 cut(s) | 77 |
| BmgT120I | GGNCC | 1 cut(s) | 515 |
| BmiI | GGNNCC | 2 cut(s) | 355, 421 |
| BmrFI | CCNGG | 1 cut(s) | 504 |
| BmsI | GCATC | 1 cut(s) | 336 |
| BpiI | GAAGAC | 2 cut(s) | 57, 260 |
| BsaBI | GATNNNNATC | 1 cut(s) | 245 |
| BsaJI | CCNNGG | 2 cut(s) | 414, 459 |
| BsaWI | WCCGGW | 1 cut(s) | 433 |
| Bsc4I | CCNNNNNNNGG | 1 cut(s) | 46 |
| Bse8I | GATNNNNATC | 1 cut(s) | 245 |
| BseAI | TCCGGA | 1 cut(s) | 433 |
| BseBI | CCWGG | 1 cut(s) | 504 |
| BseDI | CCNNGG | 2 cut(s) | 414, 459 |
| BseJI | GATNNNNATC | 1 cut(s) | 245 |
| BseLI | CCNNNNNNNGG | 1 cut(s) | 46 |
| Bsh1236I | CGCG | 3 cut(s) | 23, 416, 453 |
| BshNI | GGYRCC | 1 cut(s) | 353 |
| BsiHKCI | CYCGRG | 1 cut(s) | 77 |
| BsiSI | CCGG | 1 cut(s) | 434 |
| BslI | CCNNNNNNNGG | 1 cut(s) | 46 |
| BsmAI | GTCTC | 1 cut(s) | 280 |
| BsmBI | CGTCTC | 1 cut(s) | 280 |
| BsoBI | CYCGRG | 1 cut(s) | 77 |
| Bsp13I | TCCGGA | 1 cut(s) | 433 |
| Bsp143I | GATC | 1 cut(s) | 246 |
| BspACI | CCGC | 2 cut(s) | 414, 416 |
| BspEI | TCCGGA | 1 cut(s) | 433 |
| BspFNI | CGCG | 3 cut(s) | 23, 416, 453 |
| BspHI | TCATGA | 1 cut(s) | 340 |
| BspLI | GGNNCC | 2 cut(s) | 355, 421 |
| BspT107I | GGYRCC | 1 cut(s) | 353 |
| BssECI | CCNNGG | 2 cut(s) | 414, 459 |
| BssMI | GATC | 1 cut(s) | 246 |
| BssT1I | CCWWGG | 1 cut(s) | 459 |
| Bst2UI | CCWGG | 1 cut(s) | 504 |
| BstDEI | CTNAG | 2 cut(s) | 121, 486 |
| BstDSI | CCRYGG | 1 cut(s) | 414 |
| BstENI | CCTNNNNNAGG | 1 cut(s) | 44 |
| BstFNI | CGCG | 3 cut(s) | 23, 416, 453 |
| BstHHI | GCGC | 2 cut(s) | 25, 455 |
| BstKTI | GATC | 1 cut(s) | 249 |
| BstMAI | GTCTC | 1 cut(s) | 280 |
| BstMBI | GATC | 1 cut(s) | 246 |
| BstNI | CCWGG | 1 cut(s) | 504 |
| BstSCI | CCNGG | 1 cut(s) | 502 |
| BstUI | CGCG | 3 cut(s) | 23, 416, 453 |
| BstV2I | GAAGAC | 2 cut(s) | 57, 260 |
| BtgI | CCRYGG | 1 cut(s) | 414 |
| BtsI | GCAGTG | 1 cut(s) | 89 |
| BtsIMutI | CAGTG | 1 cut(s) | 89 |
| CciI | TCATGA | 1 cut(s) | 340 |
| CfoI | GCGC | 2 cut(s) | 25, 455 |
| Cfr13I | GGNCC | 1 cut(s) | 515 |
| Cfr42I | CCGCGG | 1 cut(s) | 417 |
| CseI | GACGC | 3 cut(s) | 29, 333, 477 |
| Csp6I | GTAC | 2 cut(s) | 37, 167 |
| CspCI | CAANNNNNGTGG | 2 cut(s) | 131, 166 |
| CviAII | CATG | 3 cut(s) | 13, 341, 358 |
| CviJI | RGCY | 4 cut(s) | 141, 293, 346, 368 |
| CviKI_1 | RGCY | 4 cut(s) | 141, 293, 346, 368 |
| CviQI | GTAC | 2 cut(s) | 37, 167 |
| DdeI | CTNAG | 2 cut(s) | 121, 486 |
| DpnI | GATC | 1 cut(s) | 248 |
| DpnII | GATC | 1 cut(s) | 246 |
| DraI | TTTAAA | 1 cut(s) | 372 |
| DrdI | GACNNNNNNGTC | 1 cut(s) | 513 |
| DseDI | GACNNNNNNGTC | 1 cut(s) | 513 |
| Eco130I | CCWWGG | 1 cut(s) | 459 |
| Eco47I | GGWCC | 1 cut(s) | 515 |
| Eco88I | CYCGRG | 1 cut(s) | 77 |
| EcoNI | CCTNNNNNAGG | 1 cut(s) | 44 |
| EcoRII | CCWGG | 1 cut(s) | 502 |
| EcoT14I | CCWWGG | 1 cut(s) | 459 |
| ErhI | CCWWGG | 1 cut(s) | 459 |
| Esp3I | CGTCTC | 1 cut(s) | 280 |
| FaeI | CATG | 3 cut(s) | 16, 344, 361 |
| FatI | CATG | 3 cut(s) | 12, 340, 357 |
| FauI | CCCGC | 2 cut(s) | 409, 421 |
| FbaI | TGATCA | 1 cut(s) | 246 |
| FspBI | CTAG | 2 cut(s) | 321, 408 |
| GlaI | GCGC | 2 cut(s) | 24, 454 |
| HapII | CCGG | 1 cut(s) | 434 |
| HgaI | GACGC | 3 cut(s) | 29, 333, 477 |
| HhaI | GCGC | 2 cut(s) | 25, 455 |
| Hin1II | CATG | 3 cut(s) | 16, 344, 361 |
| Hin6I | GCGC | 2 cut(s) | 23, 453 |
| HinP1I | GCGC | 2 cut(s) | 23, 453 |
| HinfI | GANTC | 3 cut(s) | 104, 256, 437 |
| HpaII | CCGG | 1 cut(s) | 434 |
| Hpy166II | GTNNAC | 1 cut(s) | 221 |
| Hpy188I | TCNGA | 4 cut(s) | 29, 184, 235, 306 |
| Hpy188III | TCNNGA | 5 cut(s) | 116, 250, 341, 408, 434 |
| Hpy8I | GTNNAC | 1 cut(s) | 221 |
| HpyAV | CCTTC | 3 cut(s) | 122, 277, 533 |
| HpyCH4IV | ACGT | 2 cut(s) | 96, 508 |
| HpyCH4V | TGCA | 1 cut(s) | 281 |
| HpyF3I | CTNAG | 2 cut(s) | 121, 486 |
| HpySE526I | ACGT | 2 cut(s) | 96, 508 |
| Hsp92II | CATG | 3 cut(s) | 16, 344, 361 |
| HspAI | GCGC | 2 cut(s) | 23, 453 |
| Kpn2I | TCCGGA | 1 cut(s) | 433 |
| Ksp22I | TGATCA | 1 cut(s) | 246 |
| KspI | CCGCGG | 1 cut(s) | 417 |
| Kzo9I | GATC | 1 cut(s) | 246 |
| LmnI | GCTCC | 2 cut(s) | 30, 475 |
| LpnPI | CCDG | 6 cut(s) | 52, 129, 447, 489, 498, 516 |
| LweI | GCATC | 1 cut(s) | 336 |
| MaeI | CTAG | 2 cut(s) | 321, 408 |
| MaeII | ACGT | 2 cut(s) | 96, 508 |
| MalI | GATC | 1 cut(s) | 248 |
| MboI | GATC | 1 cut(s) | 246 |
| MboII | GAAGA | 3 cut(s) | 62, 265, 406 |
| MluCI | AATT | 4 cut(s) | 178, 212, 348, 442 |
| MlyI | GAGTC | 2 cut(s) | 250, 446 |
| MnlI | CCTC | 6 cut(s) | 40, 50, 119, 155, 458, 466 |
| MroI | TCCGGA | 1 cut(s) | 433 |
| MroXI | GAANNNNTTC | 1 cut(s) | 189 |
| MseI | TTAA | 1 cut(s) | 371 |
| MslI | CAYNNNNRTG | 2 cut(s) | 15, 389 |
| MspA1I | CMGCKG | 1 cut(s) | 416 |
| MspI | CCGG | 1 cut(s) | 434 |
| MspR9I | CCNGG | 1 cut(s) | 504 |
| MvaI | CCWGG | 1 cut(s) | 504 |
| MvnI | CGCG | 3 cut(s) | 23, 416, 453 |
| NdeII | GATC | 1 cut(s) | 246 |
| NlaIII | CATG | 3 cut(s) | 16, 344, 361 |
| NlaIV | GGNNCC | 2 cut(s) | 355, 421 |
| PaeR7I | CTCGAG | 1 cut(s) | 77 |
| PagI | TCATGA | 1 cut(s) | 340 |
| PcsI | WCGNNNNNNNCGW | 1 cut(s) | 475 |
| PdmI | GAANNNNTTC | 1 cut(s) | 189 |
| PfeI | GAWTC | 1 cut(s) | 104 |
| PfoI | TCCNGGA | 1 cut(s) | 502 |
| PleI | GAGTC | 2 cut(s) | 250, 445 |
| PpsI | GAGTC | 2 cut(s) | 250, 445 |
| Psp6I | CCWGG | 1 cut(s) | 502 |
| PspGI | CCWGG | 1 cut(s) | 502 |
| PspN4I | GGNNCC | 2 cut(s) | 355, 421 |
| PspPI | GGNCC | 1 cut(s) | 515 |
| PspXI | VCTCGAGB | 1 cut(s) | 77 |
| RsaI | GTAC | 2 cut(s) | 38, 168 |
| RsaNI | GTAC | 2 cut(s) | 37, 167 |
| RseI | CAYNNNNRTG | 2 cut(s) | 15, 389 |
| SacII | CCGCGG | 1 cut(s) | 417 |
| SaqAI | TTAA | 1 cut(s) | 371 |
| Sau3AI | GATC | 1 cut(s) | 246 |
| Sau96I | GGNCC | 1 cut(s) | 515 |
| SchI | GAGTC | 2 cut(s) | 250, 446 |
| ScrFI | CCNGG | 1 cut(s) | 504 |
| SetI | ASST | 8 cut(s) | 42, 99, 147, 269, 348, 370, 511, 549 |
| SfaNI | GCATC | 1 cut(s) | 336 |
| Sfr274I | CTCGAG | 1 cut(s) | 77 |
| Sfr303I | CCGCGG | 1 cut(s) | 417 |
| SgrBI | CCGCGG | 1 cut(s) | 417 |
| SinI | GGWCC | 1 cut(s) | 515 |
| SlaI | CTCGAG | 1 cut(s) | 77 |
| SmiMI | CAYNNNNRTG | 2 cut(s) | 15, 389 |
| SmlI | CTYRAG | 1 cut(s) | 77 |
| SmoI | CTYRAG | 1 cut(s) | 77 |
| Sse9I | AATT | 4 cut(s) | 178, 212, 348, 442 |
| SsiI | CCGC | 2 cut(s) | 414, 416 |
| SspMI | CTAG | 2 cut(s) | 321, 408 |
| StyD4I | CCNGG | 1 cut(s) | 502 |
| StyI | CCWWGG | 1 cut(s) | 459 |
| TaiI | ACGT | 2 cut(s) | 99, 511 |
| TaqI | TCGA | 1 cut(s) | 78 |
| TasI | AATT | 4 cut(s) | 178, 212, 348, 442 |
| TatI | WGTACW | 1 cut(s) | 166 |
| TfiI | GAWTC | 1 cut(s) | 104 |
| Tru1I | TTAA | 1 cut(s) | 371 |
| Tru9I | TTAA | 1 cut(s) | 371 |
| TscAI | CASTG | 1 cut(s) | 89 |
| TspDTI | ATGAA | 4 cut(s) | 29, 329, 374, 552 |
| TspRI | CASTG | 1 cut(s) | 89 |
| VpaK11BI | GGWCC | 1 cut(s) | 515 |
| XagI | CCTNNNNNAGG | 1 cut(s) | 44 |
| XbaI | TCTAGA | 1 cut(s) | 407 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 63 |
| XhoI | CTCGAG | 1 cut(s) | 77 |
| XmnI | GAANNNNTTC | 1 cut(s) | 189 |
| XspI | CTAG | 2 cut(s) | 321, 408 |