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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AatII | GACGTC | 1 cut(s) | 472 |
| AccIII | TCCGGA | 1 cut(s) | 394 |
| AciI | CCGC | 1 cut(s) | 106 |
| AclWI | GGATC | 2 cut(s) | 366, 470 |
| AcyI | GRCGYC | 1 cut(s) | 469 |
| AfaI | GTAC | 1 cut(s) | 382 |
| AfiI | CCNNNNNNNGG | 1 cut(s) | 425 |
| AgsI | TTSAA | 2 cut(s) | 121, 314 |
| AjuI | GAANNNNNNNTTGG | 2 cut(s) | 33, 65 |
| AluBI | AGCT | 2 cut(s) | 307, 317 |
| AluI | AGCT | 2 cut(s) | 307, 317 |
| Alw21I | GWGCWC | 1 cut(s) | 309 |
| AlwI | GGATC | 2 cut(s) | 366, 470 |
| Aor13HI | TCCGGA | 1 cut(s) | 394 |
| AspLEI | GCGC | 1 cut(s) | 507 |
| BanII | GRGCYC | 1 cut(s) | 309 |
| BbsI | GAAGAC | 2 cut(s) | 18, 221 |
| Bbv12I | GWGCWC | 1 cut(s) | 309 |
| BccI | CCATC | 3 cut(s) | 87, 241, 242 |
| BcgI | CGANNNNNNTGC | 2 cut(s) | 260, 294 |
| BciVI | GTATCC | 1 cut(s) | 451 |
| BfaI | CTAG | 4 cut(s) | 83, 131, 501, 508 |
| BfoI | RGCGCY | 1 cut(s) | 508 |
| BfuI | GTATCC | 1 cut(s) | 451 |
| BmsI | GCATC | 1 cut(s) | 262 |
| BpiI | GAAGAC | 2 cut(s) | 18, 221 |
| Bsa29I | ATCGAT | 1 cut(s) | 270 |
| BsaHI | GRCGYC | 1 cut(s) | 469 |
| BsaJI | CCNNGG | 1 cut(s) | 375 |
| BsaWI | WCCGGW | 1 cut(s) | 394 |
| Bsc4I | CCNNNNNNNGG | 1 cut(s) | 425 |
| BseAI | TCCGGA | 1 cut(s) | 394 |
| BseCI | ATCGAT | 1 cut(s) | 270 |
| BseDI | CCNNGG | 1 cut(s) | 375 |
| BseGI | GGATG | 1 cut(s) | 345 |
| BseLI | CCNNNNNNNGG | 1 cut(s) | 425 |
| BshVI | ATCGAT | 1 cut(s) | 270 |
| BsiHKAI | GWGCWC | 1 cut(s) | 309 |
| BsiSI | CCGG | 1 cut(s) | 395 |
| BslI | CCNNNNNNNGG | 1 cut(s) | 425 |
| Bsp1286I | GDGCHC | 1 cut(s) | 309 |
| Bsp13I | TCCGGA | 1 cut(s) | 394 |
| Bsp143I | GATC | 3 cut(s) | 189, 371, 475 |
| BspACI | CCGC | 1 cut(s) | 106 |
| BspDI | ATCGAT | 1 cut(s) | 270 |
| BspEI | TCCGGA | 1 cut(s) | 394 |
| BspHI | TCATGA | 1 cut(s) | 301 |
| BspPI | GGATC | 2 cut(s) | 366, 470 |
| BssECI | CCNNGG | 1 cut(s) | 375 |
| BssMI | GATC | 3 cut(s) | 189, 371, 475 |
| BssNI | GRCGYC | 1 cut(s) | 469 |
| BstACI | GRCGYC | 1 cut(s) | 469 |
| BstDEI | CTNAG | 2 cut(s) | 255, 452 |
| BstDSI | CCRYGG | 1 cut(s) | 375 |
| BstF5I | GGATG | 1 cut(s) | 345 |
| BstH2I | RGCGCY | 1 cut(s) | 508 |
| BstHHI | GCGC | 1 cut(s) | 507 |
| BstKTI | GATC | 3 cut(s) | 192, 374, 478 |
| BstMBI | GATC | 3 cut(s) | 189, 371, 475 |
| BstV2I | GAAGAC | 2 cut(s) | 18, 221 |
| BstX2I | RGATCY | 1 cut(s) | 371 |
| BstYI | RGATCY | 1 cut(s) | 371 |
| Bsu15I | ATCGAT | 1 cut(s) | 270 |
| BsuI | GTATCC | 1 cut(s) | 451 |
| BsuTUI | ATCGAT | 1 cut(s) | 270 |
| BtgI | CCRYGG | 1 cut(s) | 375 |
| BtgZI | GCGATG | 1 cut(s) | 215 |
| BtsCI | GGATG | 1 cut(s) | 345 |
| CciI | TCATGA | 1 cut(s) | 301 |
| CfoI | GCGC | 1 cut(s) | 507 |
| ClaI | ATCGAT | 1 cut(s) | 270 |
| Csp6I | GTAC | 1 cut(s) | 381 |
| CviAII | CATG | 2 cut(s) | 302, 338 |
| CviJI | RGCY | 4 cut(s) | 25, 102, 307, 317 |
| CviKI_1 | RGCY | 4 cut(s) | 25, 102, 307, 317 |
| CviQI | GTAC | 1 cut(s) | 381 |
| DdeI | CTNAG | 2 cut(s) | 255, 452 |
| DpnI | GATC | 3 cut(s) | 191, 373, 477 |
| DpnII | GATC | 3 cut(s) | 189, 371, 475 |
| Ecl136II | GAGCTC | 1 cut(s) | 307 |
| Eco24I | GRGCYC | 1 cut(s) | 309 |
| Eco53kI | GAGCTC | 1 cut(s) | 307 |
| EcoICRI | GAGCTC | 1 cut(s) | 307 |
| EcoT38I | GRGCYC | 1 cut(s) | 309 |
| FaeI | CATG | 2 cut(s) | 305, 341 |
| FaiI | YATR | 9 cut(s) | 99, 114, 178, 303, 339, 363, 390, 408, 481 |
| FatI | CATG | 2 cut(s) | 301, 337 |
| FokI | GGATG | 1 cut(s) | 332 |
| FriOI | GRGCYC | 1 cut(s) | 309 |
| FspBI | CTAG | 4 cut(s) | 83, 131, 501, 508 |
| GlaI | GCGC | 1 cut(s) | 506 |
| HaeII | RGCGCY | 1 cut(s) | 508 |
| HapII | CCGG | 1 cut(s) | 395 |
| HhaI | GCGC | 1 cut(s) | 507 |
| Hin1I | GRCGYC | 1 cut(s) | 469 |
| Hin1II | CATG | 2 cut(s) | 305, 341 |
| Hin6I | GCGC | 1 cut(s) | 505 |
| HinP1I | GCGC | 1 cut(s) | 505 |
| HinfI | GANTC | 5 cut(s) | 65, 217, 267, 288, 398 |
| HpaII | CCGG | 1 cut(s) | 395 |
| Hpy188I | TCNGA | 1 cut(s) | 145 |
| Hpy188III | TCNNGA | 7 cut(s) | 77, 131, 302, 369, 395, 465, 473 |
| HpyAV | CCTTC | 1 cut(s) | 15 |
| HpyCH4IV | ACGT | 2 cut(s) | 57, 469 |
| HpyCH4V | TGCA | 2 cut(s) | 242, 281 |
| HpyF3I | CTNAG | 2 cut(s) | 255, 452 |
| HpySE526I | ACGT | 2 cut(s) | 57, 469 |
| Hsp92I | GRCGYC | 1 cut(s) | 469 |
| Hsp92II | CATG | 2 cut(s) | 305, 341 |
| HspAI | GCGC | 1 cut(s) | 505 |
| Kpn2I | TCCGGA | 1 cut(s) | 394 |
| Kzo9I | GATC | 3 cut(s) | 189, 371, 475 |
| LpnPI | CCDG | 6 cut(s) | 31, 83, 90, 408, 450, 486 |
| LweI | GCATC | 1 cut(s) | 262 |
| MaeI | CTAG | 4 cut(s) | 83, 131, 501, 508 |
| MaeII | ACGT | 2 cut(s) | 57, 469 |
| MaeIII | GTNAC | 2 cut(s) | 62, 410 |
| MalI | GATC | 3 cut(s) | 191, 373, 477 |
| MboI | GATC | 3 cut(s) | 189, 371, 475 |
| MboII | GAAGA | 4 cut(s) | 20, 23, 226, 367 |
| MflI | RGATCY | 1 cut(s) | 371 |
| MhlI | GDGCHC | 1 cut(s) | 309 |
| MluCI | AATT | 3 cut(s) | 173, 364, 403 |
| MlyI | GAGTC | 2 cut(s) | 59, 211 |
| MnlI | CCTC | 2 cut(s) | 113, 139 |
| MroI | TCCGGA | 1 cut(s) | 394 |
| MseI | TTAA | 2 cut(s) | 159, 167 |
| MslI | CAYNNNNRTG | 1 cut(s) | 350 |
| MspI | CCGG | 1 cut(s) | 395 |
| NdeII | GATC | 3 cut(s) | 189, 371, 475 |
| NlaIII | CATG | 2 cut(s) | 305, 341 |
| NmuCI | GTSAC | 2 cut(s) | 62, 410 |
| PagI | TCATGA | 1 cut(s) | 301 |
| PfeI | GAWTC | 3 cut(s) | 267, 288, 398 |
| PleI | GAGTC | 2 cut(s) | 59, 211 |
| PpsI | GAGTC | 2 cut(s) | 59, 211 |
| Psp124BI | GAGCTC | 1 cut(s) | 309 |
| PsuI | RGATCY | 1 cut(s) | 371 |
| RsaI | GTAC | 1 cut(s) | 382 |
| RsaNI | GTAC | 1 cut(s) | 381 |
| RseI | CAYNNNNRTG | 1 cut(s) | 350 |
| SacI | GAGCTC | 1 cut(s) | 309 |
| SaqAI | TTAA | 2 cut(s) | 159, 167 |
| Sau3AI | GATC | 3 cut(s) | 189, 371, 475 |
| SchI | GAGTC | 2 cut(s) | 59, 211 |
| SduI | GDGCHC | 1 cut(s) | 309 |
| SetI | ASST | 6 cut(s) | 60, 84, 309, 319, 472, 489 |
| SfaNI | GCATC | 1 cut(s) | 262 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 350 |
| Sse9I | AATT | 3 cut(s) | 173, 364, 403 |
| SsiI | CCGC | 1 cut(s) | 106 |
| SspMI | CTAG | 4 cut(s) | 83, 131, 501, 508 |
| SstI | GAGCTC | 1 cut(s) | 309 |
| TaiI | ACGT | 2 cut(s) | 60, 472 |
| TaqI | TCGA | 4 cut(s) | 39, 265, 270, 368 |
| TasI | AATT | 3 cut(s) | 173, 364, 403 |
| TfiI | GAWTC | 3 cut(s) | 267, 288, 398 |
| Tru1I | TTAA | 2 cut(s) | 159, 167 |
| Tru9I | TTAA | 2 cut(s) | 159, 167 |
| TseFI | GTSAC | 2 cut(s) | 62, 410 |
| Tsp45I | GTSAC | 2 cut(s) | 62, 410 |
| TspDTI | ATGAA | 3 cut(s) | 17, 21, 290 |
| TspGWI | ACGGA | 2 cut(s) | 115, 364 |
| XbaI | TCTAGA | 1 cut(s) | 130 |
| XcmI | CCANNNNNNNNNTGG | 2 cut(s) | 25, 426 |
| XspI | CTAG | 4 cut(s) | 83, 131, 501, 508 |
| ZraI | GACGTC | 1 cut(s) | 470 |