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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AanI | TTATAA | 2 cut(s) | 167, 212 |
| Acc65I | GGTACC | 1 cut(s) | 242 |
| AccB1I | GGYRCC | 2 cut(s) | 242, 409 |
| AccBSI | CCGCTC | 1 cut(s) | 240 |
| AciI | CCGC | 6 cut(s) | 240, 288, 309, 322, 433, 474 |
| AclWI | GGATC | 2 cut(s) | 100, 507 |
| AcuI | CTGAAG | 1 cut(s) | 95 |
| AcvI | CACGTG | 2 cut(s) | 331, 349 |
| AdeI | CACNNNGTG | 2 cut(s) | 334, 448 |
| AfaI | GTAC | 3 cut(s) | 72, 244, 592 |
| AfiI | CCNNNNNNNGG | 6 cut(s) | 226, 227, 253, 297, 350, 423 |
| AflIII | ACRYGT | 2 cut(s) | 328, 346 |
| AgsI | TTSAA | 3 cut(s) | 173, 519, 651 |
| AjnI | CCWGG | 1 cut(s) | 296 |
| AluBI | AGCT | 6 cut(s) | 9, 111, 133, 547, 554, 655 |
| AluI | AGCT | 6 cut(s) | 9, 111, 133, 547, 554, 655 |
| Alw21I | GWGCWC | 3 cut(s) | 444, 453, 671 |
| Alw44I | GTGCAC | 3 cut(s) | 440, 449, 667 |
| AlwI | GGATC | 2 cut(s) | 100, 507 |
| AoxI | GGCC | 2 cut(s) | 175, 276 |
| ApaI | GGGCCC | 1 cut(s) | 280 |
| ApaLI | GTGCAC | 3 cut(s) | 440, 449, 667 |
| ApeKI | GCWGC | 1 cut(s) | 547 |
| AseI | ATTAAT | 1 cut(s) | 116 |
| Asp718I | GGTACC | 1 cut(s) | 242 |
| AspA2I | CCTAGG | 1 cut(s) | 421 |
| AspLEI | GCGC | 1 cut(s) | 233 |
| AspS9I | GGNCC | 4 cut(s) | 176, 276, 277, 570 |
| AsuHPI | GGTGA | 1 cut(s) | 627 |
| AvaII | GGWCC | 1 cut(s) | 570 |
| AvrII | CCTAGG | 1 cut(s) | 421 |
| BaeGI | GKGCMC | 4 cut(s) | 280, 444, 453, 671 |
| BanI | GGYRCC | 2 cut(s) | 242, 409 |
| BanII | GRGCYC | 1 cut(s) | 280 |
| BauI | CACGAG | 2 cut(s) | 96, 154 |
| BbrPI | CACGTG | 2 cut(s) | 331, 349 |
| Bbv12I | GWGCWC | 3 cut(s) | 444, 453, 671 |
| BbvI | GCAGC | 1 cut(s) | 534 |
| BccI | CCATC | 2 cut(s) | 113, 610 |
| BceAI | ACGGC | 1 cut(s) | 362 |
| BciT130I | CCWGG | 1 cut(s) | 298 |
| BciVI | GTATCC | 2 cut(s) | 318, 379 |
| BfaI | CTAG | 3 cut(s) | 374, 422, 544 |
| BfmI | CTRYAG | 2 cut(s) | 128, 555 |
| BfuI | GTATCC | 2 cut(s) | 318, 379 |
| BisI | GCNGC | 1 cut(s) | 548 |
| BlnI | CCTAGG | 1 cut(s) | 421 |
| BlsI | GCNGC | 1 cut(s) | 549 |
| Bme1390I | CCNGG | 1 cut(s) | 298 |
| Bme18I | GGWCC | 1 cut(s) | 570 |
| BmgT120I | GGNCC | 4 cut(s) | 176, 276, 277, 570 |
| BmiI | GGNNCC | 5 cut(s) | 103, 244, 278, 411, 571 |
| BmrFI | CCNGG | 1 cut(s) | 298 |
| BmsI | GCATC | 1 cut(s) | 666 |
| Bsa29I | ATCGAT | 1 cut(s) | 492 |
| BsaAI | YACGTR | 2 cut(s) | 331, 349 |
| BsaBI | GATNNNNATC | 2 cut(s) | 498, 629 |
| BsaJI | CCNNGG | 1 cut(s) | 421 |
| BsaXI | ACNNNNNCTCC | 4 cut(s) | 345, 375, 402, 432 |
| Bsc4I | CCNNNNNNNGG | 6 cut(s) | 226, 227, 253, 297, 350, 423 |
| Bse3DI | GCAATG | 2 cut(s) | 483, 529 |
| Bse8I | GATNNNNATC | 2 cut(s) | 498, 629 |
| BseBI | CCWGG | 1 cut(s) | 298 |
| BseCI | ATCGAT | 1 cut(s) | 492 |
| BseDI | CCNNGG | 1 cut(s) | 421 |
| BseGI | GGATG | 1 cut(s) | 681 |
| BseJI | GATNNNNATC | 2 cut(s) | 498, 629 |
| BseLI | CCNNNNNNNGG | 6 cut(s) | 226, 227, 253, 297, 350, 423 |
| BseMI | GCAATG | 2 cut(s) | 483, 529 |
| BseMII | CTCAG | 2 cut(s) | 125, 565 |
| BseSI | GKGCMC | 4 cut(s) | 280, 444, 453, 671 |
| BseXI | GCAGC | 1 cut(s) | 534 |
| BshFI | GGCC | 2 cut(s) | 177, 278 |
| BshNI | GGYRCC | 2 cut(s) | 242, 409 |
| BshVI | ATCGAT | 1 cut(s) | 492 |
| BsiHKAI | GWGCWC | 3 cut(s) | 444, 453, 671 |
| BslFI | GGGAC | 3 cut(s) | 272, 281, 583 |
| BslI | CCNNNNNNNGG | 6 cut(s) | 226, 227, 253, 297, 350, 423 |
| BsmFI | GGGAC | 3 cut(s) | 272, 281, 583 |
| BsnI | GGCC | 2 cut(s) | 177, 278 |
| Bsp120I | GGGCCC | 1 cut(s) | 276 |
| Bsp1286I | GDGCHC | 4 cut(s) | 280, 444, 453, 671 |
| Bsp143I | GATC | 2 cut(s) | 92, 499 |
| BspACI | CCGC | 6 cut(s) | 240, 288, 309, 322, 433, 474 |
| BspANI | GGCC | 2 cut(s) | 177, 278 |
| BspCNI | CTCAG | 2 cut(s) | 126, 566 |
| BspDI | ATCGAT | 1 cut(s) | 492 |
| BspHI | TCATGA | 1 cut(s) | 198 |
| BspLI | GGNNCC | 5 cut(s) | 103, 244, 278, 411, 571 |
| BspPI | GGATC | 2 cut(s) | 100, 507 |
| BspT107I | GGYRCC | 2 cut(s) | 242, 409 |
| BsrBI | CCGCTC | 1 cut(s) | 240 |
| BsrDI | GCAATG | 2 cut(s) | 483, 529 |
| BssECI | CCNNGG | 1 cut(s) | 421 |
| BssMI | GATC | 2 cut(s) | 92, 499 |
| BssSI | CACGAG | 2 cut(s) | 96, 154 |
| BssT1I | CCWWGG | 1 cut(s) | 421 |
| Bst2BI | CACGAG | 2 cut(s) | 96, 154 |
| Bst2UI | CCWGG | 1 cut(s) | 298 |
| Bst4CI | ACNGT | 1 cut(s) | 70 |
| Bst6I | CTCTTC | 1 cut(s) | 476 |
| BstAPI | GCANNNNNTGC | 1 cut(s) | 448 |
| BstBAI | YACGTR | 2 cut(s) | 331, 349 |
| BstC8I | GCNNGC | 2 cut(s) | 433, 552 |
| BstDEI | CTNAG | 4 cut(s) | 134, 188, 248, 574 |
| BstF5I | GGATG | 1 cut(s) | 681 |
| BstHHI | GCGC | 1 cut(s) | 233 |
| BstKTI | GATC | 2 cut(s) | 95, 502 |
| BstMBI | GATC | 2 cut(s) | 92, 499 |
| BstMWI | GCNNNNNNNGC | 2 cut(s) | 237, 448 |
| BstNI | CCWGG | 1 cut(s) | 298 |
| BstSCI | CCNGG | 1 cut(s) | 296 |
| BstSFI | CTRYAG | 2 cut(s) | 128, 555 |
| BstSLI | GKGCMC | 4 cut(s) | 280, 444, 453, 671 |
| BstV1I | GCAGC | 1 cut(s) | 534 |
| Bsu15I | ATCGAT | 1 cut(s) | 492 |
| BsuI | GTATCC | 2 cut(s) | 318, 379 |
| BsuRI | GGCC | 2 cut(s) | 177, 278 |
| BsuTUI | ATCGAT | 1 cut(s) | 492 |
| BtsCI | GGATG | 1 cut(s) | 681 |
| Cac8I | GCNNGC | 2 cut(s) | 433, 552 |
| CciI | TCATGA | 1 cut(s) | 198 |
| CfoI | GCGC | 1 cut(s) | 233 |
| Cfr13I | GGNCC | 4 cut(s) | 176, 276, 277, 570 |
| ClaI | ATCGAT | 1 cut(s) | 492 |
| Csp6I | GTAC | 3 cut(s) | 71, 243, 591 |
| CviAII | CATG | 3 cut(s) | 142, 199, 672 |
| CviQI | GTAC | 3 cut(s) | 71, 243, 591 |
| DdeI | CTNAG | 4 cut(s) | 134, 188, 248, 574 |
| DpnI | GATC | 2 cut(s) | 94, 501 |
| DpnII | GATC | 2 cut(s) | 92, 499 |
| DraIII | CACNNNGTG | 2 cut(s) | 334, 448 |
| Eam1104I | CTCTTC | 1 cut(s) | 476 |
| EarI | CTCTTC | 1 cut(s) | 476 |
| Eco130I | CCWWGG | 1 cut(s) | 421 |
| Eco24I | GRGCYC | 1 cut(s) | 280 |
| Eco47I | GGWCC | 1 cut(s) | 570 |
| Eco57I | CTGAAG | 1 cut(s) | 95 |
| Eco72I | CACGTG | 2 cut(s) | 331, 349 |
| EcoO109I | RGGNCCY | 1 cut(s) | 570 |
| EcoRII | CCWGG | 1 cut(s) | 296 |
| EcoT14I | CCWWGG | 1 cut(s) | 421 |
| EcoT38I | GRGCYC | 1 cut(s) | 280 |
| ErhI | CCWWGG | 1 cut(s) | 421 |
| FaeI | CATG | 3 cut(s) | 145, 202, 675 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 578, 610 |
| FaqI | GGGAC | 3 cut(s) | 272, 281, 583 |
| FatI | CATG | 3 cut(s) | 141, 198, 671 |
| FauI | CCCGC | 1 cut(s) | 440 |
| Fnu4HI | GCNGC | 1 cut(s) | 548 |
| FokI | GGATG | 1 cut(s) | 688 |
| FriOI | GRGCYC | 1 cut(s) | 280 |
| Fsp4HI | GCNGC | 1 cut(s) | 548 |
| FspBI | CTAG | 3 cut(s) | 374, 422, 544 |
| GlaI | GCGC | 1 cut(s) | 232 |
| GluI | GCNGC | 1 cut(s) | 548 |
| HaeIII | GGCC | 2 cut(s) | 177, 278 |
| HhaI | GCGC | 1 cut(s) | 233 |
| Hin1II | CATG | 3 cut(s) | 145, 202, 675 |
| Hin6I | GCGC | 1 cut(s) | 231 |
| HinP1I | GCGC | 1 cut(s) | 231 |
| HinfI | GANTC | 1 cut(s) | 486 |
| HphI | GGTGA | 1 cut(s) | 627 |
| Hpy166II | GTNNAC | 4 cut(s) | 442, 451, 591, 669 |
| Hpy188III | TCNNGA | 3 cut(s) | 96, 156, 199 |
| Hpy8I | GTNNAC | 4 cut(s) | 442, 451, 591, 669 |
| HpyAV | CCTTC | 2 cut(s) | 42, 295 |
| HpyCH4III | ACNGT | 1 cut(s) | 70 |
| HpyCH4IV | ACGT | 5 cut(s) | 270, 330, 348, 438, 447 |
| HpyCH4V | TGCA | 8 cut(s) | 217, 442, 451, 527, 550, 598, 669, 679 |
| HpyF10VI | GCNNNNNNNGC | 2 cut(s) | 237, 448 |
| HpyF3I | CTNAG | 4 cut(s) | 134, 188, 248, 574 |
| HpySE526I | ACGT | 5 cut(s) | 270, 330, 348, 438, 447 |
| Hsp92II | CATG | 3 cut(s) | 145, 202, 675 |
| HspAI | GCGC | 1 cut(s) | 231 |
| KpnI | GGTACC | 1 cut(s) | 246 |
| Kzo9I | GATC | 2 cut(s) | 92, 499 |
| LmnI | GCTCC | 1 cut(s) | 237 |
| LpnPI | CCDG | 5 cut(s) | 71, 283, 310, 543, 586 |
| Lsp1109I | GCAGC | 1 cut(s) | 534 |
| LweI | GCATC | 1 cut(s) | 666 |
| MaeI | CTAG | 3 cut(s) | 374, 422, 544 |
| MaeII | ACGT | 5 cut(s) | 270, 330, 348, 438, 447 |
| MalI | GATC | 2 cut(s) | 94, 501 |
| MbiI | CCGCTC | 1 cut(s) | 240 |
| MboI | GATC | 2 cut(s) | 92, 499 |
| MboII | GAAGA | 6 cut(s) | 493, 613, 616, 619, 622, 625 |
| MfeI | CAATTG | 1 cut(s) | 503 |
| MhlI | GDGCHC | 4 cut(s) | 280, 444, 453, 671 |
| MluCI | AATT | 6 cut(s) | 11, 162, 168, 207, 457, 503 |
| MlyI | GAGTC | 1 cut(s) | 495 |
| MseI | TTAA | 2 cut(s) | 116, 460 |
| MslI | CAYNNNNRTG | 3 cut(s) | 154, 494, 674 |
| MspR9I | CCNGG | 1 cut(s) | 298 |
| MunI | CAATTG | 1 cut(s) | 503 |
| MvaI | CCWGG | 1 cut(s) | 298 |
| MwoI | GCNNNNNNNGC | 2 cut(s) | 237, 448 |
| NdeII | GATC | 2 cut(s) | 92, 499 |
| NlaIII | CATG | 3 cut(s) | 145, 202, 675 |
| NlaIV | GGNNCC | 5 cut(s) | 103, 244, 278, 411, 571 |
| PagI | TCATGA | 1 cut(s) | 198 |
| PcsI | WCGNNNNNNNCGW | 2 cut(s) | 435, 444 |
| PkrI | GCNGC | 1 cut(s) | 549 |
| PleI | GAGTC | 1 cut(s) | 494 |
| PmaCI | CACGTG | 2 cut(s) | 331, 349 |
| PmlI | CACGTG | 2 cut(s) | 331, 349 |
| PpsI | GAGTC | 1 cut(s) | 494 |
| Ppu21I | YACGTR | 2 cut(s) | 331, 349 |
| PpuMI | RGGWCCY | 1 cut(s) | 570 |
| PshBI | ATTAAT | 1 cut(s) | 116 |
| PsiI | TTATAA | 2 cut(s) | 167, 212 |
| Psp5II | RGGWCCY | 1 cut(s) | 570 |
| Psp6I | CCWGG | 1 cut(s) | 296 |
| PspCI | CACGTG | 2 cut(s) | 331, 349 |
| PspGI | CCWGG | 1 cut(s) | 296 |
| PspN4I | GGNNCC | 5 cut(s) | 103, 244, 278, 411, 571 |
| PspOMI | GGGCCC | 1 cut(s) | 276 |
| PspPI | GGNCC | 4 cut(s) | 176, 276, 277, 570 |
| PspPPI | RGGWCCY | 1 cut(s) | 570 |
| RsaI | GTAC | 3 cut(s) | 72, 244, 592 |
| RsaNI | GTAC | 3 cut(s) | 71, 243, 591 |
| RseI | CAYNNNNRTG | 3 cut(s) | 154, 494, 674 |
| SaqAI | TTAA | 2 cut(s) | 116, 460 |
| SatI | GCNGC | 1 cut(s) | 548 |
| Sau3AI | GATC | 2 cut(s) | 92, 499 |
| Sau96I | GGNCC | 4 cut(s) | 176, 276, 277, 570 |
| SchI | GAGTC | 1 cut(s) | 495 |
| ScrFI | CCNGG | 1 cut(s) | 298 |
| SduI | GDGCHC | 4 cut(s) | 280, 444, 453, 671 |
| SfaNI | GCATC | 1 cut(s) | 666 |
| SfcI | CTRYAG | 2 cut(s) | 128, 555 |
| SinI | GGWCC | 1 cut(s) | 570 |
| SmiMI | CAYNNNNRTG | 3 cut(s) | 154, 494, 674 |
| Sse9I | AATT | 6 cut(s) | 11, 162, 168, 207, 457, 503 |
| SsiI | CCGC | 6 cut(s) | 240, 288, 309, 322, 433, 474 |
| SspI | AATATT | 1 cut(s) | 120 |
| SspMI | CTAG | 3 cut(s) | 374, 422, 544 |
| StyD4I | CCNGG | 1 cut(s) | 296 |
| StyI | CCWWGG | 1 cut(s) | 421 |
| TaaI | ACNGT | 1 cut(s) | 70 |
| TaiI | ACGT | 5 cut(s) | 273, 333, 351, 441, 450 |
| TaqI | TCGA | 1 cut(s) | 492 |
| TasI | AATT | 6 cut(s) | 11, 162, 168, 207, 457, 503 |
| Tru1I | TTAA | 2 cut(s) | 116, 460 |
| Tru9I | TTAA | 2 cut(s) | 116, 460 |
| TseI | GCWGC | 1 cut(s) | 547 |
| TspDTI | ATGAA | 3 cut(s) | 187, 494, 677 |
| TspGWI | ACGGA | 1 cut(s) | 105 |
| VneI | GTGCAC | 3 cut(s) | 440, 449, 667 |
| VpaK11BI | GGWCC | 1 cut(s) | 570 |
| VspI | ATTAAT | 1 cut(s) | 116 |
| XmaJI | CCTAGG | 1 cut(s) | 421 |
| XspI | CTAG | 3 cut(s) | 374, 422, 544 |