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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| Acc36I | ACCTGC | 1 cut(s) | 144 |
| AciI | CCGC | 2 cut(s) | 79, 621 |
| AclWI | GGATC | 2 cut(s) | 479, 549 |
| AdeI | CACNNNGTG | 1 cut(s) | 661 |
| AfaI | GTAC | 1 cut(s) | 248 |
| AfiI | CCNNNNNNNGG | 1 cut(s) | 229 |
| AflII | CTTAAG | 1 cut(s) | 89 |
| AflIII | ACRYGT | 1 cut(s) | 589 |
| AgsI | TTSAA | 2 cut(s) | 22, 304 |
| AhlI | ACTAGT | 1 cut(s) | 613 |
| AluBI | AGCT | 4 cut(s) | 155, 490, 500, 653 |
| AluI | AGCT | 4 cut(s) | 155, 490, 500, 653 |
| Alw21I | GWGCWC | 1 cut(s) | 492 |
| Alw26I | GTCTC | 1 cut(s) | 424 |
| AlwI | GGATC | 2 cut(s) | 479, 549 |
| Ama87I | CYCGRG | 1 cut(s) | 119 |
| ApeKI | GCWGC | 1 cut(s) | 179 |
| AsuHPI | GGTGA | 3 cut(s) | 211, 610, 647 |
| AvaI | CYCGRG | 1 cut(s) | 119 |
| BaeGI | GKGCMC | 1 cut(s) | 589 |
| BanII | GRGCYC | 1 cut(s) | 492 |
| BbsI | GAAGAC | 2 cut(s) | 273, 404 |
| Bbv12I | GWGCWC | 1 cut(s) | 492 |
| BbvI | GCAGC | 1 cut(s) | 191 |
| BccI | CCATC | 3 cut(s) | 92, 215, 424 |
| BclI | TGATCA | 1 cut(s) | 577 |
| BcoDI | GTCTC | 1 cut(s) | 424 |
| BcuI | ACTAGT | 1 cut(s) | 613 |
| BfaI | CTAG | 6 cut(s) | 51, 107, 126, 273, 614, 689 |
| BfmI | CTRYAG | 2 cut(s) | 445, 462 |
| BfrI | CTTAAG | 1 cut(s) | 89 |
| BfuAI | ACCTGC | 1 cut(s) | 144 |
| BglI | GCCNNNNNGGC | 1 cut(s) | 188 |
| BisI | GCNGC | 1 cut(s) | 180 |
| BlsI | GCNGC | 1 cut(s) | 181 |
| BmeT110I | CYCGRG | 1 cut(s) | 119 |
| BmsI | GCATC | 2 cut(s) | 94, 370 |
| BpiI | GAAGAC | 2 cut(s) | 273, 404 |
| BpuEI | CTTGAG | 2 cut(s) | 141, 227 |
| BsaJI | CCNNGG | 1 cut(s) | 558 |
| Bsc4I | CCNNNNNNNGG | 1 cut(s) | 229 |
| Bse118I | RCCGGY | 1 cut(s) | 81 |
| Bse1I | ACTGG | 1 cut(s) | 49 |
| BseDI | CCNNGG | 1 cut(s) | 558 |
| BseGI | GGATG | 2 cut(s) | 210, 528 |
| BseLI | CCNNNNNNNGG | 1 cut(s) | 229 |
| BseMII | CTCAG | 1 cut(s) | 452 |
| BseNI | ACTGG | 1 cut(s) | 49 |
| BseSI | GKGCMC | 1 cut(s) | 589 |
| BseXI | GCAGC | 1 cut(s) | 191 |
| BsiHKAI | GWGCWC | 1 cut(s) | 492 |
| BsiHKCI | CYCGRG | 1 cut(s) | 119 |
| BsiSI | CCGG | 1 cut(s) | 82 |
| BslI | CCNNNNNNNGG | 1 cut(s) | 229 |
| BsmAI | GTCTC | 1 cut(s) | 424 |
| BsmBI | CGTCTC | 1 cut(s) | 424 |
| BsoBI | CYCGRG | 1 cut(s) | 119 |
| Bsp1286I | GDGCHC | 2 cut(s) | 492, 589 |
| Bsp143I | GATC | 6 cut(s) | 372, 471, 554, 577, 673, 685 |
| BspACI | CCGC | 2 cut(s) | 79, 621 |
| BspCNI | CTCAG | 1 cut(s) | 451 |
| BspHI | TCATGA | 2 cut(s) | 484, 604 |
| BspMI | ACCTGC | 1 cut(s) | 144 |
| BspPI | GGATC | 2 cut(s) | 479, 549 |
| BspTI | CTTAAG | 1 cut(s) | 89 |
| BsrFI | RCCGGY | 1 cut(s) | 81 |
| BsrI | ACTGG | 1 cut(s) | 49 |
| BssAI | RCCGGY | 1 cut(s) | 81 |
| BssECI | CCNNGG | 1 cut(s) | 558 |
| BssMI | GATC | 6 cut(s) | 372, 471, 554, 577, 673, 685 |
| Bst4CI | ACNGT | 1 cut(s) | 145 |
| Bst6I | CTCTTC | 1 cut(s) | 427 |
| BstAFI | CTTAAG | 1 cut(s) | 89 |
| BstC8I | GCNNGC | 2 cut(s) | 83, 153 |
| BstDEI | CTNAG | 2 cut(s) | 184, 438 |
| BstDSI | CCRYGG | 1 cut(s) | 558 |
| BstF5I | GGATG | 2 cut(s) | 210, 528 |
| BstKTI | GATC | 6 cut(s) | 375, 474, 557, 580, 676, 688 |
| BstMAI | GTCTC | 1 cut(s) | 424 |
| BstMBI | GATC | 6 cut(s) | 372, 471, 554, 577, 673, 685 |
| BstMWI | GCNNNNNNNGC | 4 cut(s) | 176, 188, 629, 650 |
| BstSFI | CTRYAG | 2 cut(s) | 445, 462 |
| BstSLI | GKGCMC | 1 cut(s) | 589 |
| BstV1I | GCAGC | 1 cut(s) | 191 |
| BstV2I | GAAGAC | 2 cut(s) | 273, 404 |
| BstX2I | RGATCY | 1 cut(s) | 554 |
| BstYI | RGATCY | 1 cut(s) | 554 |
| BtgI | CCRYGG | 1 cut(s) | 558 |
| BtgZI | GCGATG | 1 cut(s) | 398 |
| BtsCI | GGATG | 2 cut(s) | 210, 528 |
| BveI | ACCTGC | 1 cut(s) | 144 |
| Cac8I | GCNNGC | 2 cut(s) | 83, 153 |
| CciI | TCATGA | 2 cut(s) | 484, 604 |
| Cfr10I | RCCGGY | 1 cut(s) | 81 |
| Csp6I | GTAC | 1 cut(s) | 247 |
| CviAII | CATG | 5 cut(s) | 131, 485, 521, 605, 659 |
| CviQI | GTAC | 1 cut(s) | 247 |
| DdeI | CTNAG | 2 cut(s) | 184, 438 |
| DpnI | GATC | 6 cut(s) | 374, 473, 556, 579, 675, 687 |
| DpnII | GATC | 6 cut(s) | 372, 471, 554, 577, 673, 685 |
| DraIII | CACNNNGTG | 1 cut(s) | 661 |
| Eam1104I | CTCTTC | 1 cut(s) | 427 |
| EarI | CTCTTC | 1 cut(s) | 427 |
| EciI | GGCGGA | 1 cut(s) | 68 |
| Ecl136II | GAGCTC | 1 cut(s) | 490 |
| Eco24I | GRGCYC | 1 cut(s) | 492 |
| Eco32I | GATATC | 1 cut(s) | 56 |
| Eco53kI | GAGCTC | 1 cut(s) | 490 |
| Eco88I | CYCGRG | 1 cut(s) | 119 |
| EcoICRI | GAGCTC | 1 cut(s) | 490 |
| EcoRV | GATATC | 1 cut(s) | 56 |
| EcoT38I | GRGCYC | 1 cut(s) | 492 |
| Esp3I | CGTCTC | 1 cut(s) | 424 |
| FaeI | CATG | 5 cut(s) | 134, 488, 524, 608, 662 |
| FatI | CATG | 5 cut(s) | 130, 484, 520, 604, 658 |
| FauNDI | CATATG | 1 cut(s) | 228 |
| FbaI | TGATCA | 1 cut(s) | 577 |
| Fnu4HI | GCNGC | 1 cut(s) | 180 |
| FokI | GGATG | 2 cut(s) | 197, 515 |
| FriOI | GRGCYC | 1 cut(s) | 492 |
| Fsp4HI | GCNGC | 1 cut(s) | 180 |
| FspBI | CTAG | 6 cut(s) | 51, 107, 126, 273, 614, 689 |
| GluI | GCNGC | 1 cut(s) | 180 |
| HapII | CCGG | 1 cut(s) | 82 |
| Hin1II | CATG | 5 cut(s) | 134, 488, 524, 608, 662 |
| HinfI | GANTC | 5 cut(s) | 102, 115, 236, 357, 400 |
| HpaII | CCGG | 1 cut(s) | 82 |
| HphI | GGTGA | 3 cut(s) | 211, 610, 647 |
| Hpy188I | TCNGA | 3 cut(s) | 328, 441, 577 |
| Hpy188III | TCNNGA | 9 cut(s) | 51, 71, 119, 314, 485, 552, 605, 677, 689 |
| HpyAV | CCTTC | 3 cut(s) | 270, 296, 421 |
| HpyCH4III | ACNGT | 1 cut(s) | 145 |
| HpyCH4IV | ACGT | 1 cut(s) | 591 |
| HpyCH4V | TGCA | 1 cut(s) | 339 |
| HpyF10VI | GCNNNNNNNGC | 4 cut(s) | 176, 188, 629, 650 |
| HpyF3I | CTNAG | 2 cut(s) | 184, 438 |
| HpySE526I | ACGT | 1 cut(s) | 591 |
| Hsp92II | CATG | 5 cut(s) | 134, 488, 524, 608, 662 |
| KroI | GCCGGC | 1 cut(s) | 81 |
| KroNI | GCCGGC | 1 cut(s) | 83 |
| Ksp22I | TGATCA | 1 cut(s) | 577 |
| Kzo9I | GATC | 6 cut(s) | 372, 471, 554, 577, 673, 685 |
| LmnI | GCTCC | 1 cut(s) | 497 |
| LpnPI | CCDG | 6 cut(s) | 23, 30, 46, 95, 149, 450 |
| Lsp1109I | GCAGC | 1 cut(s) | 191 |
| LweI | GCATC | 2 cut(s) | 94, 370 |
| MaeI | CTAG | 6 cut(s) | 51, 107, 126, 273, 614, 689 |
| MaeII | ACGT | 1 cut(s) | 591 |
| MaeIII | GTNAC | 2 cut(s) | 5, 616 |
| MalI | GATC | 6 cut(s) | 374, 473, 556, 579, 675, 687 |
| MboI | GATC | 6 cut(s) | 372, 471, 554, 577, 673, 685 |
| MboII | GAAGA | 7 cut(s) | 275, 278, 409, 414, 620, 683, 692 |
| MflI | RGATCY | 1 cut(s) | 554 |
| MhlI | GDGCHC | 2 cut(s) | 492, 589 |
| MluCI | AATT | 3 cut(s) | 17, 450, 547 |
| MlyI | GAGTC | 1 cut(s) | 394 |
| MnlI | CCTC | 1 cut(s) | 181 |
| MroNI | GCCGGC | 1 cut(s) | 81 |
| MseI | TTAA | 3 cut(s) | 90, 342, 350 |
| MslI | CAYNNNNRTG | 1 cut(s) | 215 |
| MspCI | CTTAAG | 1 cut(s) | 89 |
| MspI | CCGG | 1 cut(s) | 82 |
| MwoI | GCNNNNNNNGC | 4 cut(s) | 176, 188, 629, 650 |
| NaeI | GCCGGC | 1 cut(s) | 83 |
| NdeI | CATATG | 1 cut(s) | 228 |
| NdeII | GATC | 6 cut(s) | 372, 471, 554, 577, 673, 685 |
| NgoMIV | GCCGGC | 1 cut(s) | 81 |
| NlaIII | CATG | 5 cut(s) | 134, 488, 524, 608, 662 |
| NmuCI | GTSAC | 1 cut(s) | 616 |
| PaeR7I | CTCGAG | 1 cut(s) | 119 |
| PagI | TCATGA | 2 cut(s) | 484, 604 |
| PdiI | GCCGGC | 1 cut(s) | 83 |
| PfeI | GAWTC | 4 cut(s) | 102, 115, 236, 357 |
| PkrI | GCNGC | 1 cut(s) | 181 |
| PleI | GAGTC | 1 cut(s) | 394 |
| PpsI | GAGTC | 1 cut(s) | 394 |
| Psp124BI | GAGCTC | 1 cut(s) | 492 |
| PsuI | RGATCY | 1 cut(s) | 554 |
| RsaI | GTAC | 1 cut(s) | 248 |
| RsaNI | GTAC | 1 cut(s) | 247 |
| RseI | CAYNNNNRTG | 1 cut(s) | 215 |
| SacI | GAGCTC | 1 cut(s) | 492 |
| SaqAI | TTAA | 3 cut(s) | 90, 342, 350 |
| SatI | GCNGC | 1 cut(s) | 180 |
| Sau3AI | GATC | 6 cut(s) | 372, 471, 554, 577, 673, 685 |
| SchI | GAGTC | 1 cut(s) | 394 |
| SduI | GDGCHC | 2 cut(s) | 492, 589 |
| SfaNI | GCATC | 2 cut(s) | 94, 370 |
| SfcI | CTRYAG | 2 cut(s) | 445, 462 |
| Sfr274I | CTCGAG | 1 cut(s) | 119 |
| SlaI | CTCGAG | 1 cut(s) | 119 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 215 |
| SmlI | CTYRAG | 4 cut(s) | 89, 119, 156, 242 |
| SmoI | CTYRAG | 4 cut(s) | 89, 119, 156, 242 |
| SpeI | ACTAGT | 1 cut(s) | 613 |
| Sse9I | AATT | 3 cut(s) | 17, 450, 547 |
| SsiI | CCGC | 2 cut(s) | 79, 621 |
| SspMI | CTAG | 6 cut(s) | 51, 107, 126, 273, 614, 689 |
| SstI | GAGCTC | 1 cut(s) | 492 |
| TaaI | ACNGT | 1 cut(s) | 145 |
| TaiI | ACGT | 1 cut(s) | 594 |
| TaqI | TCGA | 2 cut(s) | 120, 551 |
| TasI | AATT | 3 cut(s) | 17, 450, 547 |
| TfiI | GAWTC | 4 cut(s) | 102, 115, 236, 357 |
| Tru1I | TTAA | 3 cut(s) | 90, 342, 350 |
| Tru9I | TTAA | 3 cut(s) | 90, 342, 350 |
| TseFI | GTSAC | 1 cut(s) | 616 |
| TseI | GCWGC | 1 cut(s) | 179 |
| Tsp45I | GTSAC | 1 cut(s) | 616 |
| TspDTI | ATGAA | 8 cut(s) | 21, 272, 276, 414, 473, 518, 593, 621 |
| TspGWI | ACGGA | 2 cut(s) | 484, 547 |
| Vha464I | CTTAAG | 1 cut(s) | 89 |
| XbaI | TCTAGA | 2 cut(s) | 50, 688 |
| XhoI | CTCGAG | 1 cut(s) | 119 |
| XspI | CTAG | 6 cut(s) | 51, 107, 126, 273, 614, 689 |