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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AasI | GACNNNNNNGTC | 1 cut(s) | 633 |
| AccB1I | GGYRCC | 1 cut(s) | 746 |
| AciI | CCGC | 2 cut(s) | 79, 361 |
| AclWI | GGATC | 1 cut(s) | 546 |
| AcoI | YGGCCR | 2 cut(s) | 127, 733 |
| AcsI | RAATTY | 1 cut(s) | 428 |
| AcyI | GRCGYC | 2 cut(s) | 589, 747 |
| AfaI | GTAC | 2 cut(s) | 248, 510 |
| AfiI | CCNNNNNNNGG | 1 cut(s) | 397 |
| AgsI | TTSAA | 3 cut(s) | 296, 376, 784 |
| AjiI | CACGTC | 1 cut(s) | 136 |
| AjnI | CCWGG | 2 cut(s) | 124, 129 |
| AjuI | GAANNNNNNNTTGG | 2 cut(s) | 288, 320 |
| AluBI | AGCT | 4 cut(s) | 155, 161, 869, 920 |
| AluI | AGCT | 4 cut(s) | 155, 161, 869, 920 |
| Alw21I | GWGCWC | 1 cut(s) | 871 |
| Alw26I | GTCTC | 2 cut(s) | 292, 496 |
| AlwI | GGATC | 1 cut(s) | 546 |
| Ama87I | CYCGRG | 1 cut(s) | 119 |
| AoxI | GGCC | 2 cut(s) | 127, 733 |
| ApoI | RAATTY | 1 cut(s) | 428 |
| Asp700I | GAANNNNTTC | 2 cut(s) | 405, 473 |
| AspLEI | GCGC | 2 cut(s) | 749, 790 |
| AspS9I | GGNCC | 1 cut(s) | 635 |
| AsuHPI | GGTGA | 1 cut(s) | 877 |
| AvaI | CYCGRG | 1 cut(s) | 119 |
| AvaII | GGWCC | 1 cut(s) | 635 |
| AxyI | CCTNAGG | 1 cut(s) | 611 |
| BaeGI | GKGCMC | 1 cut(s) | 856 |
| BalI | TGGCCA | 2 cut(s) | 129, 735 |
| BanI | GGYRCC | 1 cut(s) | 746 |
| BanII | GRGCYC | 1 cut(s) | 871 |
| BauI | CACGAG | 1 cut(s) | 870 |
| BbsI | GAAGAC | 2 cut(s) | 273, 476 |
| Bbv12I | GWGCWC | 1 cut(s) | 871 |
| BccI | CCATC | 6 cut(s) | 92, 215, 342, 496, 529, 774 |
| BciT130I | CCWGG | 2 cut(s) | 126, 131 |
| BciVI | GTATCC | 1 cut(s) | 610 |
| BcoDI | GTCTC | 2 cut(s) | 292, 496 |
| BfaI | CTAG | 4 cut(s) | 107, 338, 606, 956 |
| BfmI | CTRYAG | 1 cut(s) | 529 |
| BfoI | RGCGCY | 2 cut(s) | 750, 791 |
| BfuI | GTATCC | 1 cut(s) | 610 |
| Bme1390I | CCNGG | 2 cut(s) | 126, 131 |
| Bme18I | GGWCC | 1 cut(s) | 635 |
| BmeT110I | CYCGRG | 1 cut(s) | 119 |
| BmgBI | CACGTC | 1 cut(s) | 136 |
| BmgT120I | GGNCC | 1 cut(s) | 635 |
| BmiI | GGNNCC | 1 cut(s) | 748 |
| BmrFI | CCNGG | 2 cut(s) | 126, 131 |
| BpiI | GAAGAC | 2 cut(s) | 273, 476 |
| BpuEI | CTTGAG | 3 cut(s) | 74, 141, 227 |
| BsaHI | GRCGYC | 2 cut(s) | 589, 747 |
| BsaI | GGTCTC | 1 cut(s) | 292 |
| Bsc4I | CCNNNNNNNGG | 1 cut(s) | 397 |
| Bse1I | ACTGG | 1 cut(s) | 49 |
| Bse21I | CCTNAGG | 1 cut(s) | 611 |
| Bse3DI | GCAATG | 1 cut(s) | 730 |
| BseBI | CCWGG | 2 cut(s) | 126, 131 |
| BseGI | GGATG | 4 cut(s) | 210, 238, 540, 766 |
| BseLI | CCNNNNNNNGG | 1 cut(s) | 397 |
| BseMI | GCAATG | 1 cut(s) | 730 |
| BseMII | CTCAG | 1 cut(s) | 286 |
| BseNI | ACTGG | 1 cut(s) | 49 |
| BseSI | GKGCMC | 1 cut(s) | 856 |
| BshFI | GGCC | 2 cut(s) | 129, 735 |
| BshNI | GGYRCC | 1 cut(s) | 746 |
| BsiHKAI | GWGCWC | 1 cut(s) | 871 |
| BsiHKCI | CYCGRG | 1 cut(s) | 119 |
| BslI | CCNNNNNNNGG | 1 cut(s) | 397 |
| BsmAI | GTCTC | 2 cut(s) | 292, 496 |
| BsmBI | CGTCTC | 1 cut(s) | 496 |
| BsnI | GGCC | 2 cut(s) | 129, 735 |
| Bso31I | GGTCTC | 1 cut(s) | 292 |
| BsoBI | CYCGRG | 1 cut(s) | 119 |
| Bsp1286I | GDGCHC | 2 cut(s) | 856, 871 |
| Bsp143I | GATC | 4 cut(s) | 444, 538, 940, 952 |
| BspACI | CCGC | 2 cut(s) | 79, 361 |
| BspANI | GGCC | 2 cut(s) | 129, 735 |
| BspCNI | CTCAG | 1 cut(s) | 285 |
| BspLI | GGNNCC | 1 cut(s) | 748 |
| BspMAI | CTGCAG | 1 cut(s) | 533 |
| BspPI | GGATC | 1 cut(s) | 546 |
| BspT107I | GGYRCC | 1 cut(s) | 746 |
| BspTNI | GGTCTC | 1 cut(s) | 292 |
| BsrDI | GCAATG | 1 cut(s) | 730 |
| BsrI | ACTGG | 1 cut(s) | 49 |
| BssMI | GATC | 4 cut(s) | 444, 538, 940, 952 |
| BssNI | GRCGYC | 2 cut(s) | 589, 747 |
| BssSI | CACGAG | 1 cut(s) | 870 |
| Bst2BI | CACGAG | 1 cut(s) | 870 |
| Bst2UI | CCWGG | 2 cut(s) | 126, 131 |
| Bst4CI | ACNGT | 1 cut(s) | 145 |
| Bst6I | CTCTTC | 1 cut(s) | 688 |
| BstACI | GRCGYC | 2 cut(s) | 589, 747 |
| BstC8I | GCNNGC | 1 cut(s) | 153 |
| BstDEI | CTNAG | 5 cut(s) | 184, 272, 579, 611, 759 |
| BstF5I | GGATG | 4 cut(s) | 210, 238, 540, 766 |
| BstH2I | RGCGCY | 2 cut(s) | 750, 791 |
| BstHHI | GCGC | 2 cut(s) | 749, 790 |
| BstKTI | GATC | 4 cut(s) | 447, 541, 943, 955 |
| BstMAI | GTCTC | 2 cut(s) | 292, 496 |
| BstMBI | GATC | 4 cut(s) | 444, 538, 940, 952 |
| BstMWI | GCNNNNNNNGC | 2 cut(s) | 595, 785 |
| BstNI | CCWGG | 2 cut(s) | 126, 131 |
| BstSCI | CCNGG | 2 cut(s) | 124, 129 |
| BstSFI | CTRYAG | 1 cut(s) | 529 |
| BstSLI | GKGCMC | 1 cut(s) | 856 |
| BstV2I | GAAGAC | 2 cut(s) | 273, 476 |
| BstXI | CCANNNNNNTGG | 1 cut(s) | 743 |
| Bsu36I | CCTNAGG | 1 cut(s) | 611 |
| BsuI | GTATCC | 1 cut(s) | 610 |
| BsuRI | GGCC | 2 cut(s) | 129, 735 |
| BtgZI | GCGATG | 1 cut(s) | 470 |
| BtrI | CACGTC | 1 cut(s) | 136 |
| BtsCI | GGATG | 4 cut(s) | 210, 238, 540, 766 |
| Cac8I | GCNNGC | 1 cut(s) | 153 |
| CfoI | GCGC | 2 cut(s) | 749, 790 |
| Cfr13I | GGNCC | 1 cut(s) | 635 |
| CseI | GACGC | 2 cut(s) | 578, 785 |
| Csp6I | GTAC | 2 cut(s) | 247, 509 |
| CviAII | CATG | 3 cut(s) | 317, 522, 737 |
| CviQI | GTAC | 2 cut(s) | 247, 509 |
| DdeI | CTNAG | 5 cut(s) | 184, 272, 579, 611, 759 |
| DinI | GGCGCC | 1 cut(s) | 748 |
| DpnI | GATC | 4 cut(s) | 446, 540, 942, 954 |
| DpnII | GATC | 4 cut(s) | 444, 538, 940, 952 |
| DrdI | GACNNNNNNGTC | 1 cut(s) | 633 |
| DseDI | GACNNNNNNGTC | 1 cut(s) | 633 |
| EaeI | YGGCCR | 2 cut(s) | 127, 733 |
| Eam1104I | CTCTTC | 1 cut(s) | 688 |
| EarI | CTCTTC | 1 cut(s) | 688 |
| EciI | GGCGGA | 1 cut(s) | 68 |
| Ecl136II | GAGCTC | 1 cut(s) | 869 |
| Eco24I | GRGCYC | 1 cut(s) | 871 |
| Eco31I | GGTCTC | 1 cut(s) | 292 |
| Eco47I | GGWCC | 1 cut(s) | 635 |
| Eco53kI | GAGCTC | 1 cut(s) | 869 |
| Eco81I | CCTNAGG | 1 cut(s) | 611 |
| Eco88I | CYCGRG | 1 cut(s) | 119 |
| EcoICRI | GAGCTC | 1 cut(s) | 869 |
| EcoRI | GAATTC | 1 cut(s) | 428 |
| EcoRII | CCWGG | 2 cut(s) | 124, 129 |
| EcoT38I | GRGCYC | 1 cut(s) | 871 |
| EgeI | GGCGCC | 1 cut(s) | 748 |
| EheI | GGCGCC | 1 cut(s) | 748 |
| Esp3I | CGTCTC | 1 cut(s) | 496 |
| FaeI | CATG | 3 cut(s) | 320, 525, 740 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 904, 936 |
| FatI | CATG | 3 cut(s) | 316, 521, 736 |
| FauNDI | CATATG | 1 cut(s) | 228 |
| FokI | GGATG | 4 cut(s) | 197, 245, 547, 753 |
| FriOI | GRGCYC | 1 cut(s) | 871 |
| FspBI | CTAG | 4 cut(s) | 107, 338, 606, 956 |
| GlaI | GCGC | 2 cut(s) | 748, 789 |
| HaeII | RGCGCY | 2 cut(s) | 750, 791 |
| HaeIII | GGCC | 2 cut(s) | 129, 735 |
| HgaI | GACGC | 2 cut(s) | 578, 785 |
| HhaI | GCGC | 2 cut(s) | 749, 790 |
| Hin1I | GRCGYC | 2 cut(s) | 589, 747 |
| Hin1II | CATG | 3 cut(s) | 320, 525, 740 |
| Hin6I | GCGC | 2 cut(s) | 747, 788 |
| HinP1I | GCGC | 2 cut(s) | 747, 788 |
| HincII | GTYRAC | 1 cut(s) | 701 |
| HindII | GTYRAC | 1 cut(s) | 701 |
| HindIII | AAGCTT | 2 cut(s) | 159, 918 |
| HinfI | GANTC | 6 cut(s) | 102, 115, 220, 236, 320, 517 |
| HphI | GGTGA | 1 cut(s) | 877 |
| Hpy166II | GTNNAC | 1 cut(s) | 701 |
| Hpy188I | TCNGA | 4 cut(s) | 52, 275, 400, 555 |
| Hpy188III | TCNNGA | 7 cut(s) | 71, 119, 593, 624, 828, 872, 956 |
| Hpy8I | GTNNAC | 1 cut(s) | 701 |
| HpyAV | CCTTC | 5 cut(s) | 270, 493, 579, 653, 710 |
| HpyCH4III | ACNGT | 1 cut(s) | 145 |
| HpyCH4IV | ACGT | 3 cut(s) | 135, 312, 703 |
| HpyCH4V | TGCA | 2 cut(s) | 497, 531 |
| HpyF10VI | GCNNNNNNNGC | 2 cut(s) | 595, 785 |
| HpyF3I | CTNAG | 5 cut(s) | 184, 272, 579, 611, 759 |
| HpySE526I | ACGT | 3 cut(s) | 135, 312, 703 |
| Hsp92I | GRCGYC | 2 cut(s) | 589, 747 |
| Hsp92II | CATG | 3 cut(s) | 320, 525, 740 |
| HspAI | GCGC | 2 cut(s) | 747, 788 |
| KasI | GGCGCC | 1 cut(s) | 746 |
| Kzo9I | GATC | 4 cut(s) | 444, 538, 940, 952 |
| LmnI | GCTCC | 1 cut(s) | 34 |
| MaeI | CTAG | 4 cut(s) | 107, 338, 606, 956 |
| MaeII | ACGT | 3 cut(s) | 135, 312, 703 |
| MaeIII | GTNAC | 2 cut(s) | 524, 883 |
| MalI | GATC | 4 cut(s) | 446, 540, 942, 954 |
| MboI | GATC | 4 cut(s) | 444, 538, 940, 952 |
| MboII | GAAGA | 7 cut(s) | 275, 278, 308, 481, 705, 887, 950 |
| MhlI | GDGCHC | 2 cut(s) | 856, 871 |
| MlsI | TGGCCA | 2 cut(s) | 129, 735 |
| MluCI | AATT | 4 cut(s) | 17, 428, 562, 879 |
| MluNI | TGGCCA | 2 cut(s) | 129, 735 |
| Mly113I | GGCGCC | 1 cut(s) | 747 |
| MlyI | GAGTC | 2 cut(s) | 214, 314 |
| MnlI | CCTC | 9 cut(s) | 181, 281, 368, 497, 689, 713, 739, 801, 898 |
| Mox20I | TGGCCA | 2 cut(s) | 129, 735 |
| MroXI | GAANNNNTTC | 2 cut(s) | 405, 473 |
| MscI | TGGCCA | 2 cut(s) | 129, 735 |
| MseI | TTAA | 3 cut(s) | 387, 414, 422 |
| MslI | CAYNNNNRTG | 4 cut(s) | 215, 231, 741, 771 |
| Msp20I | TGGCCA | 2 cut(s) | 129, 735 |
| MspR9I | CCNGG | 2 cut(s) | 126, 131 |
| MvaI | CCWGG | 2 cut(s) | 126, 131 |
| MwoI | GCNNNNNNNGC | 2 cut(s) | 595, 785 |
| NarI | GGCGCC | 1 cut(s) | 747 |
| NdeI | CATATG | 1 cut(s) | 228 |
| NdeII | GATC | 4 cut(s) | 444, 538, 940, 952 |
| NlaIII | CATG | 3 cut(s) | 320, 525, 740 |
| NlaIV | GGNNCC | 1 cut(s) | 748 |
| NmuCI | GTSAC | 1 cut(s) | 883 |
| PaeR7I | CTCGAG | 1 cut(s) | 119 |
| PdmI | GAANNNNTTC | 2 cut(s) | 405, 473 |
| PfeI | GAWTC | 4 cut(s) | 102, 115, 236, 517 |
| PleI | GAGTC | 2 cut(s) | 214, 314 |
| PluTI | GGCGCC | 1 cut(s) | 750 |
| PpsI | GAGTC | 2 cut(s) | 214, 314 |
| Psp124BI | GAGCTC | 1 cut(s) | 871 |
| Psp6I | CCWGG | 2 cut(s) | 124, 129 |
| PspGI | CCWGG | 2 cut(s) | 124, 129 |
| PspN4I | GGNNCC | 1 cut(s) | 748 |
| PspPI | GGNCC | 1 cut(s) | 635 |
| PstI | CTGCAG | 1 cut(s) | 533 |
| RsaI | GTAC | 2 cut(s) | 248, 510 |
| RsaNI | GTAC | 2 cut(s) | 247, 509 |
| RseI | CAYNNNNRTG | 4 cut(s) | 215, 231, 741, 771 |
| SacI | GAGCTC | 1 cut(s) | 871 |
| SaqAI | TTAA | 3 cut(s) | 387, 414, 422 |
| Sau3AI | GATC | 4 cut(s) | 444, 538, 940, 952 |
| Sau96I | GGNCC | 1 cut(s) | 635 |
| SchI | GAGTC | 2 cut(s) | 214, 314 |
| ScrFI | CCNGG | 2 cut(s) | 126, 131 |
| SduI | GDGCHC | 2 cut(s) | 856, 871 |
| SfcI | CTRYAG | 1 cut(s) | 529 |
| SfoI | GGCGCC | 1 cut(s) | 748 |
| Sfr274I | CTCGAG | 1 cut(s) | 119 |
| SinI | GGWCC | 1 cut(s) | 635 |
| SlaI | CTCGAG | 1 cut(s) | 119 |
| SmiMI | CAYNNNNRTG | 4 cut(s) | 215, 231, 741, 771 |
| SmlI | CTYRAG | 4 cut(s) | 89, 119, 156, 242 |
| SmoI | CTYRAG | 4 cut(s) | 89, 119, 156, 242 |
| Sse9I | AATT | 4 cut(s) | 17, 428, 562, 879 |
| SsiI | CCGC | 2 cut(s) | 79, 361 |
| SspDI | GGCGCC | 1 cut(s) | 746 |
| SspMI | CTAG | 4 cut(s) | 107, 338, 606, 956 |
| SstI | GAGCTC | 1 cut(s) | 871 |
| StyD4I | CCNGG | 2 cut(s) | 124, 129 |
| TaaI | ACNGT | 1 cut(s) | 145 |
| TaiI | ACGT | 3 cut(s) | 138, 315, 706 |
| TaqI | TCGA | 3 cut(s) | 120, 515, 829 |
| TasI | AATT | 4 cut(s) | 17, 428, 562, 879 |
| TatI | WGTACW | 1 cut(s) | 508 |
| TfiI | GAWTC | 4 cut(s) | 102, 115, 236, 517 |
| Tru1I | TTAA | 3 cut(s) | 387, 414, 422 |
| Tru9I | TTAA | 3 cut(s) | 387, 414, 422 |
| TseFI | GTSAC | 1 cut(s) | 883 |
| Tsp45I | GTSAC | 1 cut(s) | 883 |
| TspDTI | ATGAA | 2 cut(s) | 272, 276 |
| VpaK11BI | GGWCC | 1 cut(s) | 635 |
| XapI | RAATTY | 1 cut(s) | 428 |
| XbaI | TCTAGA | 1 cut(s) | 955 |
| XhoI | CTCGAG | 1 cut(s) | 119 |
| XmnI | GAANNNNTTC | 2 cut(s) | 405, 473 |
| XspI | CTAG | 4 cut(s) | 107, 338, 606, 956 |