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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccB1I | GGYRCC | 2 cut(s) | 302, 383 |
| AciI | CCGC | 1 cut(s) | 306 |
| AclWI | GGATC | 2 cut(s) | 425, 437 |
| AcsI | RAATTY | 1 cut(s) | 200 |
| AcyI | GRCGYC | 1 cut(s) | 384 |
| AfaI | GTAC | 2 cut(s) | 20, 504 |
| AfiI | CCNNNNNNNGG | 1 cut(s) | 332 |
| AgsI | TTSAA | 1 cut(s) | 148 |
| AjnI | CCWGG | 1 cut(s) | 388 |
| AjuI | GAANNNNNNNTTGG | 2 cut(s) | 60, 92 |
| AleI | CACNNNNGTG | 1 cut(s) | 138 |
| AluBI | AGCT | 1 cut(s) | 425 |
| AluI | AGCT | 1 cut(s) | 425 |
| Alw26I | GTCTC | 2 cut(s) | 64, 268 |
| AlwI | GGATC | 2 cut(s) | 425, 437 |
| ApoI | RAATTY | 1 cut(s) | 200 |
| Asp700I | GAANNNNTTC | 2 cut(s) | 177, 245 |
| AspA2I | CCTAGG | 1 cut(s) | 326 |
| AspLEI | GCGC | 1 cut(s) | 386 |
| AsuHPI | GGTGA | 3 cut(s) | 389, 397, 404 |
| AvrII | CCTAGG | 1 cut(s) | 326 |
| BanI | GGYRCC | 2 cut(s) | 302, 383 |
| BbsI | GAAGAC | 2 cut(s) | 45, 248 |
| BccI | CCATC | 7 cut(s) | 114, 268, 293, 327, 357, 374, 378 |
| BciT130I | CCWGG | 1 cut(s) | 390 |
| BcoDI | GTCTC | 2 cut(s) | 64, 268 |
| BfaI | CTAG | 3 cut(s) | 110, 327, 479 |
| BfoI | RGCGCY | 1 cut(s) | 387 |
| BlnI | CCTAGG | 1 cut(s) | 326 |
| Bme1390I | CCNGG | 1 cut(s) | 390 |
| BmiI | GGNNCC | 2 cut(s) | 304, 385 |
| BmrFI | CCNGG | 1 cut(s) | 390 |
| BpiI | GAAGAC | 2 cut(s) | 45, 248 |
| Bsa29I | ATCGAT | 1 cut(s) | 297 |
| BsaHI | GRCGYC | 1 cut(s) | 384 |
| BsaI | GGTCTC | 1 cut(s) | 64 |
| BsaJI | CCNNGG | 3 cut(s) | 326, 357, 388 |
| Bsc4I | CCNNNNNNNGG | 1 cut(s) | 332 |
| Bse1I | ACTGG | 1 cut(s) | 16 |
| Bse3DI | GCAATG | 1 cut(s) | 88 |
| BseBI | CCWGG | 1 cut(s) | 390 |
| BseCI | ATCGAT | 1 cut(s) | 297 |
| BseDI | CCNNGG | 3 cut(s) | 326, 357, 388 |
| BseGI | GGATG | 2 cut(s) | 10, 466 |
| BseLI | CCNNNNNNNGG | 1 cut(s) | 332 |
| BseMI | GCAATG | 1 cut(s) | 88 |
| BseNI | ACTGG | 1 cut(s) | 16 |
| BshNI | GGYRCC | 2 cut(s) | 302, 383 |
| BshVI | ATCGAT | 1 cut(s) | 297 |
| BslI | CCNNNNNNNGG | 1 cut(s) | 332 |
| BsmAI | GTCTC | 2 cut(s) | 64, 268 |
| BsmBI | CGTCTC | 1 cut(s) | 268 |
| Bso31I | GGTCTC | 1 cut(s) | 64 |
| Bsp143I | GATC | 3 cut(s) | 216, 430, 442 |
| Bsp19I | CCATGG | 1 cut(s) | 357 |
| BspACI | CCGC | 1 cut(s) | 306 |
| BspDI | ATCGAT | 1 cut(s) | 297 |
| BspLI | GGNNCC | 2 cut(s) | 304, 385 |
| BspPI | GGATC | 2 cut(s) | 425, 437 |
| BspT107I | GGYRCC | 2 cut(s) | 302, 383 |
| BspTNI | GGTCTC | 1 cut(s) | 64 |
| BsrDI | GCAATG | 1 cut(s) | 88 |
| BsrI | ACTGG | 1 cut(s) | 16 |
| BssECI | CCNNGG | 3 cut(s) | 326, 357, 388 |
| BssMI | GATC | 3 cut(s) | 216, 430, 442 |
| BssNI | GRCGYC | 1 cut(s) | 384 |
| BssT1I | CCWWGG | 2 cut(s) | 326, 357 |
| Bst2UI | CCWGG | 1 cut(s) | 390 |
| Bst4CI | ACNGT | 1 cut(s) | 154 |
| Bst6I | CTCTTC | 1 cut(s) | 453 |
| BstACI | GRCGYC | 1 cut(s) | 384 |
| BstC8I | GCNNGC | 1 cut(s) | 334 |
| BstDEI | CTNAG | 2 cut(s) | 282, 499 |
| BstDSI | CCRYGG | 1 cut(s) | 357 |
| BstF5I | GGATG | 2 cut(s) | 10, 466 |
| BstH2I | RGCGCY | 1 cut(s) | 387 |
| BstHHI | GCGC | 1 cut(s) | 386 |
| BstKTI | GATC | 3 cut(s) | 219, 433, 445 |
| BstMAI | GTCTC | 2 cut(s) | 64, 268 |
| BstMBI | GATC | 3 cut(s) | 216, 430, 442 |
| BstNI | CCWGG | 1 cut(s) | 390 |
| BstSCI | CCNGG | 1 cut(s) | 388 |
| BstV2I | GAAGAC | 2 cut(s) | 45, 248 |
| Bsu15I | ATCGAT | 1 cut(s) | 297 |
| BsuTUI | ATCGAT | 1 cut(s) | 297 |
| BtgI | CCRYGG | 1 cut(s) | 357 |
| BtgZI | GCGATG | 1 cut(s) | 242 |
| BtsCI | GGATG | 2 cut(s) | 10, 466 |
| Cac8I | GCNNGC | 1 cut(s) | 334 |
| CfoI | GCGC | 1 cut(s) | 386 |
| ClaI | ATCGAT | 1 cut(s) | 297 |
| CseI | GACGC | 1 cut(s) | 355 |
| Csp6I | GTAC | 2 cut(s) | 19, 503 |
| CviAII | CATG | 3 cut(s) | 89, 358, 374 |
| CviJI | RGCY | 5 cut(s) | 52, 129, 325, 332, 425 |
| CviKI_1 | RGCY | 5 cut(s) | 52, 129, 325, 332, 425 |
| CviQI | GTAC | 2 cut(s) | 19, 503 |
| DdeI | CTNAG | 2 cut(s) | 282, 499 |
| DinI | GGCGCC | 1 cut(s) | 385 |
| DpnI | GATC | 3 cut(s) | 218, 432, 444 |
| DpnII | GATC | 3 cut(s) | 216, 430, 442 |
| Eam1104I | CTCTTC | 1 cut(s) | 453 |
| EarI | CTCTTC | 1 cut(s) | 453 |
| Eco130I | CCWWGG | 2 cut(s) | 326, 357 |
| Eco31I | GGTCTC | 1 cut(s) | 64 |
| EcoRI | GAATTC | 1 cut(s) | 200 |
| EcoRII | CCWGG | 1 cut(s) | 388 |
| EcoT14I | CCWWGG | 2 cut(s) | 326, 357 |
| EgeI | GGCGCC | 1 cut(s) | 385 |
| EheI | GGCGCC | 1 cut(s) | 385 |
| ErhI | CCWWGG | 2 cut(s) | 326, 357 |
| Esp3I | CGTCTC | 1 cut(s) | 268 |
| FaeI | CATG | 3 cut(s) | 92, 361, 377 |
| FatI | CATG | 3 cut(s) | 88, 357, 373 |
| FauNDI | CATATG | 1 cut(s) | 223 |
| FokI | GGATG | 2 cut(s) | 17, 473 |
| FspBI | CTAG | 3 cut(s) | 110, 327, 479 |
| GlaI | GCGC | 1 cut(s) | 385 |
| HaeII | RGCGCY | 1 cut(s) | 387 |
| HgaI | GACGC | 1 cut(s) | 355 |
| HhaI | GCGC | 1 cut(s) | 386 |
| Hin1I | GRCGYC | 1 cut(s) | 384 |
| Hin1II | CATG | 3 cut(s) | 92, 361, 377 |
| Hin6I | GCGC | 1 cut(s) | 384 |
| HinP1I | GCGC | 1 cut(s) | 384 |
| HinfI | GANTC | 3 cut(s) | 8, 92, 294 |
| HphI | GGTGA | 3 cut(s) | 389, 397, 404 |
| Hpy166II | GTNNAC | 1 cut(s) | 316 |
| Hpy188I | TCNGA | 1 cut(s) | 172 |
| Hpy188III | TCNNGA | 5 cut(s) | 104, 148, 158, 428, 434 |
| Hpy8I | GTNNAC | 1 cut(s) | 316 |
| Hpy99I | CGWCG | 1 cut(s) | 456 |
| HpyAV | CCTTC | 2 cut(s) | 42, 265 |
| HpyCH4III | ACNGT | 1 cut(s) | 154 |
| HpyCH4V | TGCA | 2 cut(s) | 269, 401 |
| HpyF3I | CTNAG | 2 cut(s) | 282, 499 |
| Hsp92I | GRCGYC | 1 cut(s) | 384 |
| Hsp92II | CATG | 3 cut(s) | 92, 361, 377 |
| HspAI | GCGC | 1 cut(s) | 384 |
| KasI | GGCGCC | 1 cut(s) | 383 |
| Kzo9I | GATC | 3 cut(s) | 216, 430, 442 |
| LmnI | GCTCC | 1 cut(s) | 18 |
| LpnPI | CCDG | 7 cut(s) | 29, 58, 117, 318, 375, 402, 447 |
| MaeI | CTAG | 3 cut(s) | 110, 327, 479 |
| MalI | GATC | 3 cut(s) | 218, 432, 444 |
| MboI | GATC | 3 cut(s) | 216, 430, 442 |
| MboII | GAAGA | 6 cut(s) | 47, 50, 80, 253, 440, 482 |
| MluCI | AATT | 1 cut(s) | 200 |
| Mly113I | GGCGCC | 1 cut(s) | 384 |
| MlyI | GAGTC | 1 cut(s) | 86 |
| MnlI | CCTC | 4 cut(s) | 140, 319, 456, 475 |
| MroXI | GAANNNNTTC | 2 cut(s) | 177, 245 |
| MseI | TTAA | 1 cut(s) | 194 |
| MslI | CAYNNNNRTG | 3 cut(s) | 138, 375, 378 |
| MspR9I | CCNGG | 1 cut(s) | 390 |
| MvaI | CCWGG | 1 cut(s) | 390 |
| NarI | GGCGCC | 1 cut(s) | 384 |
| NcoI | CCATGG | 1 cut(s) | 357 |
| NdeI | CATATG | 1 cut(s) | 223 |
| NdeII | GATC | 3 cut(s) | 216, 430, 442 |
| NlaIII | CATG | 3 cut(s) | 92, 361, 377 |
| NlaIV | GGNNCC | 2 cut(s) | 304, 385 |
| OliI | CACNNNNGTG | 1 cut(s) | 138 |
| PdmI | GAANNNNTTC | 2 cut(s) | 177, 245 |
| PfeI | GAWTC | 2 cut(s) | 8, 294 |
| PleI | GAGTC | 1 cut(s) | 86 |
| PluTI | GGCGCC | 1 cut(s) | 387 |
| PpsI | GAGTC | 1 cut(s) | 86 |
| Psp6I | CCWGG | 1 cut(s) | 388 |
| PspGI | CCWGG | 1 cut(s) | 388 |
| PspN4I | GGNNCC | 2 cut(s) | 304, 385 |
| RsaI | GTAC | 2 cut(s) | 20, 504 |
| RsaNI | GTAC | 2 cut(s) | 19, 503 |
| RseI | CAYNNNNRTG | 3 cut(s) | 138, 375, 378 |
| SaqAI | TTAA | 1 cut(s) | 194 |
| Sau3AI | GATC | 3 cut(s) | 216, 430, 442 |
| SchI | GAGTC | 1 cut(s) | 86 |
| ScrFI | CCNGG | 1 cut(s) | 390 |
| SetI | ASST | 4 cut(s) | 111, 257, 394, 427 |
| SfoI | GGCGCC | 1 cut(s) | 385 |
| SmiMI | CAYNNNNRTG | 3 cut(s) | 138, 375, 378 |
| Sse9I | AATT | 1 cut(s) | 200 |
| SsiI | CCGC | 1 cut(s) | 306 |
| SspDI | GGCGCC | 1 cut(s) | 383 |
| SspMI | CTAG | 3 cut(s) | 110, 327, 479 |
| StyD4I | CCNGG | 1 cut(s) | 388 |
| StyI | CCWWGG | 2 cut(s) | 326, 357 |
| TaaI | ACNGT | 1 cut(s) | 154 |
| TaqI | TCGA | 4 cut(s) | 66, 292, 297, 454 |
| TasI | AATT | 1 cut(s) | 200 |
| TatI | WGTACW | 1 cut(s) | 502 |
| TfiI | GAWTC | 2 cut(s) | 8, 294 |
| Tru1I | TTAA | 1 cut(s) | 194 |
| Tru9I | TTAA | 1 cut(s) | 194 |
| TspDTI | ATGAA | 2 cut(s) | 44, 48 |
| XapI | RAATTY | 1 cut(s) | 200 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 377 |
| XmaJI | CCTAGG | 1 cut(s) | 326 |
| XmnI | GAANNNNTTC | 2 cut(s) | 177, 245 |
| XspI | CTAG | 3 cut(s) | 110, 327, 479 |