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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AasI | GACNNNNNNGTC | 1 cut(s) | 447 |
| AatII | GACGTC | 1 cut(s) | 445 |
| AccB1I | GGYRCC | 1 cut(s) | 287 |
| AccB7I | CCANNNNNTGG | 1 cut(s) | 809 |
| AciI | CCGC | 1 cut(s) | 79 |
| AclI | AACGTT | 1 cut(s) | 693 |
| AcsI | RAATTY | 1 cut(s) | 146 |
| AcyI | GRCGYC | 2 cut(s) | 442, 561 |
| AfaI | GTAC | 1 cut(s) | 102 |
| AfeI | AGCGCT | 1 cut(s) | 592 |
| AfiI | CCNNNNNNNGG | 1 cut(s) | 809 |
| AflIII | ACRYGT | 1 cut(s) | 517 |
| AgsI | TTSAA | 2 cut(s) | 94, 174 |
| AhdI | GACNNNNNGTC | 1 cut(s) | 94 |
| AjnI | CCWGG | 2 cut(s) | 445, 655 |
| AluBI | AGCT | 2 cut(s) | 280, 302 |
| AluI | AGCT | 2 cut(s) | 280, 302 |
| Alw21I | GWGCWC | 1 cut(s) | 499 |
| Alw26I | GTCTC | 2 cut(s) | 214, 644 |
| Alw44I | GTGCAC | 1 cut(s) | 495 |
| Ama87I | CYCGRG | 1 cut(s) | 12 |
| Aor51HI | AGCGCT | 1 cut(s) | 592 |
| AoxI | GGCC | 1 cut(s) | 535 |
| ApaLI | GTGCAC | 1 cut(s) | 495 |
| ApeKI | GCWGC | 1 cut(s) | 17 |
| ApoI | RAATTY | 1 cut(s) | 146 |
| ArsI | GACNNNNNNTTYG | 2 cut(s) | 356, 388 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 123 |
| AspLEI | GCGC | 2 cut(s) | 593, 604 |
| AspS9I | GGNCC | 1 cut(s) | 449 |
| AsuHPI | GGTGA | 2 cut(s) | 569, 773 |
| AvaI | CYCGRG | 1 cut(s) | 12 |
| AvaII | GGWCC | 1 cut(s) | 449 |
| BaeGI | GKGCMC | 1 cut(s) | 499 |
| BanI | GGYRCC | 1 cut(s) | 287 |
| BbsI | GAAGAC | 2 cut(s) | 194, 789 |
| Bbv12I | GWGCWC | 1 cut(s) | 499 |
| BbvI | GCAGC | 1 cut(s) | 29 |
| BccI | CCATC | 3 cut(s) | 60, 136, 752 |
| BciT130I | CCWGG | 2 cut(s) | 447, 657 |
| BcoDI | GTCTC | 2 cut(s) | 214, 644 |
| BfaI | CTAG | 2 cut(s) | 255, 342 |
| BfoI | RGCGCY | 2 cut(s) | 594, 605 |
| BisI | GCNGC | 1 cut(s) | 18 |
| BlsI | GCNGC | 1 cut(s) | 19 |
| Bme1390I | CCNGG | 2 cut(s) | 447, 657 |
| Bme18I | GGWCC | 1 cut(s) | 449 |
| BmeRI | GACNNNNNGTC | 1 cut(s) | 94 |
| BmeT110I | CYCGRG | 1 cut(s) | 12 |
| BmgT120I | GGNCC | 1 cut(s) | 449 |
| BmiI | GGNNCC | 4 cut(s) | 289, 355, 503, 618 |
| BmrFI | CCNGG | 2 cut(s) | 447, 657 |
| BmsI | GCATC | 2 cut(s) | 270, 692 |
| BpiI | GAAGAC | 2 cut(s) | 194, 789 |
| BpmI | CTGGAG | 1 cut(s) | 389 |
| BsaBI | GATNNNNATC | 2 cut(s) | 762, 768 |
| BsaHI | GRCGYC | 2 cut(s) | 442, 561 |
| BsaJI | CCNNGG | 2 cut(s) | 393, 505 |
| BsaWI | WCCGGW | 1 cut(s) | 545 |
| Bsc4I | CCNNNNNNNGG | 1 cut(s) | 809 |
| Bse8I | GATNNNNATC | 2 cut(s) | 762, 768 |
| BseBI | CCWGG | 2 cut(s) | 447, 657 |
| BseDI | CCNNGG | 2 cut(s) | 393, 505 |
| BseGI | GGATG | 1 cut(s) | 683 |
| BseJI | GATNNNNATC | 2 cut(s) | 762, 768 |
| BseLI | CCNNNNNNNGG | 1 cut(s) | 809 |
| BseSI | GKGCMC | 1 cut(s) | 499 |
| BseXI | GCAGC | 1 cut(s) | 29 |
| BshFI | GGCC | 1 cut(s) | 537 |
| BshNI | GGYRCC | 1 cut(s) | 287 |
| BsiHKAI | GWGCWC | 1 cut(s) | 499 |
| BsiHKCI | CYCGRG | 1 cut(s) | 12 |
| BsiSI | CCGG | 1 cut(s) | 546 |
| BslI | CCNNNNNNNGG | 1 cut(s) | 809 |
| BsmAI | GTCTC | 2 cut(s) | 214, 644 |
| BsmBI | CGTCTC | 1 cut(s) | 214 |
| BsnI | GGCC | 1 cut(s) | 537 |
| BsoBI | CYCGRG | 1 cut(s) | 12 |
| Bsp1286I | GDGCHC | 1 cut(s) | 499 |
| Bsp143I | GATC | 4 cut(s) | 608, 751, 763, 769 |
| BspACI | CCGC | 1 cut(s) | 79 |
| BspANI | GGCC | 1 cut(s) | 537 |
| BspHI | TCATGA | 1 cut(s) | 274 |
| BspLI | GGNNCC | 4 cut(s) | 289, 355, 503, 618 |
| BspT107I | GGYRCC | 1 cut(s) | 287 |
| BssECI | CCNNGG | 2 cut(s) | 393, 505 |
| BssMI | GATC | 4 cut(s) | 608, 751, 763, 769 |
| BssNI | GRCGYC | 2 cut(s) | 442, 561 |
| BssT1I | CCWWGG | 1 cut(s) | 393 |
| Bst2UI | CCWGG | 2 cut(s) | 447, 657 |
| Bst4CI | ACNGT | 1 cut(s) | 506 |
| Bst6I | CTCTTC | 1 cut(s) | 518 |
| BstACI | GRCGYC | 2 cut(s) | 442, 561 |
| BstC8I | GCNNGC | 1 cut(s) | 495 |
| BstDEI | CTNAG | 3 cut(s) | 55, 420, 773 |
| BstDSI | CCRYGG | 1 cut(s) | 505 |
| BstF5I | GGATG | 1 cut(s) | 683 |
| BstH2I | RGCGCY | 2 cut(s) | 594, 605 |
| BstHHI | GCGC | 2 cut(s) | 593, 604 |
| BstKTI | GATC | 4 cut(s) | 611, 754, 766, 772 |
| BstMAI | GTCTC | 2 cut(s) | 214, 644 |
| BstMBI | GATC | 4 cut(s) | 608, 751, 763, 769 |
| BstMWI | GCNNNNNNNGC | 2 cut(s) | 599, 680 |
| BstNI | CCWGG | 2 cut(s) | 447, 657 |
| BstSCI | CCNGG | 2 cut(s) | 445, 655 |
| BstSLI | GKGCMC | 1 cut(s) | 499 |
| BstV1I | GCAGC | 1 cut(s) | 29 |
| BstV2I | GAAGAC | 2 cut(s) | 194, 789 |
| BsuRI | GGCC | 1 cut(s) | 537 |
| BtgI | CCRYGG | 1 cut(s) | 505 |
| BtsCI | GGATG | 1 cut(s) | 683 |
| BtsIMutI | CAGTG | 1 cut(s) | 165 |
| Cac8I | GCNNGC | 1 cut(s) | 495 |
| CciI | TCATGA | 1 cut(s) | 274 |
| CfoI | GCGC | 2 cut(s) | 593, 604 |
| Cfr13I | GGNCC | 1 cut(s) | 449 |
| CseI | GACGC | 3 cut(s) | 267, 411, 569 |
| Csp6I | GTAC | 1 cut(s) | 101 |
| CviAII | CATG | 3 cut(s) | 275, 292, 742 |
| CviJI | RGCY | 7 cut(s) | 75, 227, 280, 302, 480, 537, 542 |
| CviKI_1 | RGCY | 7 cut(s) | 75, 227, 280, 302, 480, 537, 542 |
| CviQI | GTAC | 1 cut(s) | 101 |
| DdeI | CTNAG | 3 cut(s) | 55, 420, 773 |
| DpnI | GATC | 4 cut(s) | 610, 753, 765, 771 |
| DpnII | GATC | 4 cut(s) | 608, 751, 763, 769 |
| DrdI | GACNNNNNNGTC | 1 cut(s) | 447 |
| DriI | GACNNNNNGTC | 1 cut(s) | 94 |
| DseDI | GACNNNNNNGTC | 1 cut(s) | 447 |
| Eam1104I | CTCTTC | 1 cut(s) | 518 |
| Eam1105I | GACNNNNNGTC | 1 cut(s) | 94 |
| EarI | CTCTTC | 1 cut(s) | 518 |
| Eco130I | CCWWGG | 1 cut(s) | 393 |
| Eco47I | GGWCC | 1 cut(s) | 449 |
| Eco47III | AGCGCT | 1 cut(s) | 592 |
| Eco88I | CYCGRG | 1 cut(s) | 12 |
| EcoRI | GAATTC | 1 cut(s) | 146 |
| EcoRII | CCWGG | 2 cut(s) | 445, 655 |
| EcoT14I | CCWWGG | 1 cut(s) | 393 |
| ErhI | CCWWGG | 1 cut(s) | 393 |
| Esp3I | CGTCTC | 1 cut(s) | 214 |
| FaeI | CATG | 3 cut(s) | 278, 295, 745 |
| FatI | CATG | 3 cut(s) | 274, 291, 741 |
| FauNDI | CATATG | 1 cut(s) | 644 |
| Fnu4HI | GCNGC | 1 cut(s) | 18 |
| FokI | GGATG | 1 cut(s) | 670 |
| Fsp4HI | GCNGC | 1 cut(s) | 18 |
| FspBI | CTAG | 2 cut(s) | 255, 342 |
| GlaI | GCGC | 2 cut(s) | 592, 603 |
| GluI | GCNGC | 1 cut(s) | 18 |
| GsuI | CTGGAG | 1 cut(s) | 389 |
| HaeII | RGCGCY | 2 cut(s) | 594, 605 |
| HaeIII | GGCC | 1 cut(s) | 537 |
| HapII | CCGG | 1 cut(s) | 546 |
| HgaI | GACGC | 3 cut(s) | 267, 411, 569 |
| HhaI | GCGC | 2 cut(s) | 593, 604 |
| Hin1I | GRCGYC | 2 cut(s) | 442, 561 |
| Hin1II | CATG | 3 cut(s) | 278, 295, 745 |
| Hin6I | GCGC | 2 cut(s) | 591, 602 |
| HinP1I | GCGC | 2 cut(s) | 591, 602 |
| HinfI | GANTC | 5 cut(s) | 38, 170, 190, 371, 793 |
| HpaII | CCGG | 1 cut(s) | 546 |
| HphI | GGTGA | 2 cut(s) | 569, 773 |
| Hpy166II | GTNNAC | 4 cut(s) | 155, 497, 515, 650 |
| Hpy188I | TCNGA | 2 cut(s) | 118, 240 |
| Hpy188III | TCNNGA | 8 cut(s) | 275, 342, 368, 438, 719, 755, 767, 797 |
| Hpy8I | GTNNAC | 4 cut(s) | 155, 497, 515, 650 |
| HpyAV | CCTTC | 1 cut(s) | 211 |
| HpyCH4III | ACNGT | 1 cut(s) | 506 |
| HpyCH4IV | ACGT | 4 cut(s) | 297, 442, 517, 693 |
| HpyCH4V | TGCA | 2 cut(s) | 215, 497 |
| HpyF10VI | GCNNNNNNNGC | 2 cut(s) | 599, 680 |
| HpyF3I | CTNAG | 3 cut(s) | 55, 420, 773 |
| HpySE526I | ACGT | 4 cut(s) | 297, 442, 517, 693 |
| Hsp92I | GRCGYC | 2 cut(s) | 442, 561 |
| Hsp92II | CATG | 3 cut(s) | 278, 295, 745 |
| HspAI | GCGC | 2 cut(s) | 591, 602 |
| Kzo9I | GATC | 4 cut(s) | 608, 751, 763, 769 |
| LmnI | GCTCC | 2 cut(s) | 409, 598 |
| Lsp1109I | GCAGC | 1 cut(s) | 29 |
| LweI | GCATC | 2 cut(s) | 270, 692 |
| MaeI | CTAG | 2 cut(s) | 255, 342 |
| MaeII | ACGT | 4 cut(s) | 297, 442, 517, 693 |
| MaeIII | GTNAC | 3 cut(s) | 86, 557, 694 |
| MalI | GATC | 4 cut(s) | 610, 753, 765, 771 |
| MboI | GATC | 4 cut(s) | 608, 751, 763, 769 |
| MboII | GAAGA | 4 cut(s) | 199, 340, 535, 794 |
| MhlI | GDGCHC | 1 cut(s) | 499 |
| MluCI | AATT | 6 cut(s) | 112, 146, 282, 376, 433, 736 |
| MlyI | GAGTC | 2 cut(s) | 184, 380 |
| MnlI | CCTC | 9 cut(s) | 86, 392, 400, 503, 527, 553, 594, 615, 724 |
| MroXI | GAANNNNTTC | 1 cut(s) | 123 |
| MseI | TTAA | 1 cut(s) | 823 |
| MslI | CAYNNNNRTG | 2 cut(s) | 323, 630 |
| MspI | CCGG | 1 cut(s) | 546 |
| MspR9I | CCNGG | 2 cut(s) | 447, 657 |
| MvaI | CCWGG | 2 cut(s) | 447, 657 |
| MwoI | GCNNNNNNNGC | 2 cut(s) | 599, 680 |
| NdeI | CATATG | 1 cut(s) | 644 |
| NdeII | GATC | 4 cut(s) | 608, 751, 763, 769 |
| NlaIII | CATG | 3 cut(s) | 278, 295, 745 |
| NlaIV | GGNNCC | 4 cut(s) | 289, 355, 503, 618 |
| NmuCI | GTSAC | 2 cut(s) | 86, 557 |
| PaeR7I | CTCGAG | 1 cut(s) | 12 |
| PagI | TCATGA | 1 cut(s) | 274 |
| PcsI | WCGNNNNNNNCGW | 1 cut(s) | 409 |
| PdmI | GAANNNNTTC | 1 cut(s) | 123 |
| PfeI | GAWTC | 3 cut(s) | 38, 170, 793 |
| PflMI | CCANNNNNTGG | 1 cut(s) | 809 |
| PkrI | GCNGC | 1 cut(s) | 19 |
| PleI | GAGTC | 2 cut(s) | 184, 379 |
| PpsI | GAGTC | 2 cut(s) | 184, 379 |
| Psp1406I | AACGTT | 1 cut(s) | 693 |
| Psp6I | CCWGG | 2 cut(s) | 445, 655 |
| PspGI | CCWGG | 2 cut(s) | 445, 655 |
| PspN4I | GGNNCC | 4 cut(s) | 289, 355, 503, 618 |
| PspPI | GGNCC | 1 cut(s) | 449 |
| PspXI | VCTCGAGB | 1 cut(s) | 12 |
| RsaI | GTAC | 1 cut(s) | 102 |
| RsaNI | GTAC | 1 cut(s) | 101 |
| RseI | CAYNNNNRTG | 2 cut(s) | 323, 630 |
| SaqAI | TTAA | 1 cut(s) | 823 |
| SatI | GCNGC | 1 cut(s) | 18 |
| Sau3AI | GATC | 4 cut(s) | 608, 751, 763, 769 |
| Sau96I | GGNCC | 1 cut(s) | 449 |
| SchI | GAGTC | 2 cut(s) | 184, 380 |
| ScrFI | CCNGG | 2 cut(s) | 447, 657 |
| SduI | GDGCHC | 1 cut(s) | 499 |
| SfaNI | GCATC | 2 cut(s) | 270, 692 |
| Sfr274I | CTCGAG | 1 cut(s) | 12 |
| SinI | GGWCC | 1 cut(s) | 449 |
| SlaI | CTCGAG | 1 cut(s) | 12 |
| SmiMI | CAYNNNNRTG | 2 cut(s) | 323, 630 |
| SmlI | CTYRAG | 1 cut(s) | 12 |
| SmoI | CTYRAG | 1 cut(s) | 12 |
| Sse9I | AATT | 6 cut(s) | 112, 146, 282, 376, 433, 736 |
| SsiI | CCGC | 1 cut(s) | 79 |
| SspMI | CTAG | 2 cut(s) | 255, 342 |
| StyD4I | CCNGG | 2 cut(s) | 445, 655 |
| StyI | CCWWGG | 1 cut(s) | 393 |
| TaaI | ACNGT | 1 cut(s) | 506 |
| TaiI | ACGT | 4 cut(s) | 300, 445, 520, 696 |
| TaqI | TCGA | 3 cut(s) | 13, 607, 768 |
| TasI | AATT | 6 cut(s) | 112, 146, 282, 376, 433, 736 |
| TatI | WGTACW | 1 cut(s) | 100 |
| TfiI | GAWTC | 3 cut(s) | 38, 170, 793 |
| Tru1I | TTAA | 1 cut(s) | 823 |
| Tru9I | TTAA | 1 cut(s) | 823 |
| TscAI | CASTG | 1 cut(s) | 172 |
| TseFI | GTSAC | 2 cut(s) | 86, 557 |
| TseI | GCWGC | 1 cut(s) | 17 |
| Tsp45I | GTSAC | 2 cut(s) | 86, 557 |
| TspDTI | ATGAA | 2 cut(s) | 263, 308 |
| TspGWI | ACGGA | 1 cut(s) | 514 |
| TspRI | CASTG | 1 cut(s) | 172 |
| Van91I | CCANNNNNTGG | 1 cut(s) | 809 |
| VneI | GTGCAC | 1 cut(s) | 495 |
| VpaK11BI | GGWCC | 1 cut(s) | 449 |
| XapI | RAATTY | 1 cut(s) | 146 |
| XbaI | TCTAGA | 1 cut(s) | 341 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 364 |
| XhoI | CTCGAG | 1 cut(s) | 12 |
| XmnI | GAANNNNTTC | 1 cut(s) | 123 |
| XspI | CTAG | 2 cut(s) | 255, 342 |
| ZraI | GACGTC | 1 cut(s) | 443 |