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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AanI | TTATAA | 1 cut(s) | 330 |
| AccI | GTMKAC | 1 cut(s) | 380 |
| AciI | CCGC | 3 cut(s) | 298, 391, 496 |
| AclI | AACGTT | 1 cut(s) | 249 |
| AclWI | GGATC | 1 cut(s) | 650 |
| AfaI | GTAC | 1 cut(s) | 404 |
| AfiI | CCNNNNNNNGG | 3 cut(s) | 64, 199, 515 |
| AflII | CTTAAG | 1 cut(s) | 89 |
| AgsI | TTSAA | 2 cut(s) | 22, 313 |
| AluBI | AGCT | 4 cut(s) | 137, 217, 341, 419 |
| AluI | AGCT | 4 cut(s) | 137, 217, 341, 419 |
| Alw26I | GTCTC | 5 cut(s) | 32, 360, 473, 554, 651 |
| AlwI | GGATC | 1 cut(s) | 650 |
| AoxI | GGCC | 1 cut(s) | 629 |
| ApeKI | GCWGC | 1 cut(s) | 235 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 342 |
| AspLEI | GCGC | 3 cut(s) | 50, 81, 432 |
| AspS9I | GGNCC | 2 cut(s) | 67, 443 |
| AvaII | GGWCC | 2 cut(s) | 67, 443 |
| BbsI | GAAGAC | 2 cut(s) | 210, 559 |
| BbvI | GCAGC | 1 cut(s) | 247 |
| BccI | CCATC | 5 cut(s) | 92, 122, 279, 355, 433 |
| BciVI | GTATCC | 1 cut(s) | 47 |
| BcoDI | GTCTC | 5 cut(s) | 32, 360, 473, 554, 651 |
| BfaI | CTAG | 3 cut(s) | 35, 420, 534 |
| BfoI | RGCGCY | 1 cut(s) | 433 |
| BfrI | CTTAAG | 1 cut(s) | 89 |
| BfuI | GTATCC | 1 cut(s) | 47 |
| BisI | GCNGC | 1 cut(s) | 236 |
| BlsI | GCNGC | 1 cut(s) | 237 |
| Bme18I | GGWCC | 2 cut(s) | 67, 443 |
| BmgT120I | GGNCC | 2 cut(s) | 67, 443 |
| BmiI | GGNNCC | 2 cut(s) | 68, 444 |
| BpiI | GAAGAC | 2 cut(s) | 210, 559 |
| BpuEI | CTTGAG | 1 cut(s) | 251 |
| Bsc4I | CCNNNNNNNGG | 3 cut(s) | 64, 199, 515 |
| Bse1I | ACTGG | 2 cut(s) | 49, 431 |
| BseGI | GGATG | 3 cut(s) | 114, 492, 604 |
| BseLI | CCNNNNNNNGG | 3 cut(s) | 64, 199, 515 |
| BseNI | ACTGG | 2 cut(s) | 49, 431 |
| BseXI | GCAGC | 1 cut(s) | 247 |
| BshFI | GGCC | 1 cut(s) | 631 |
| BslFI | GGGAC | 1 cut(s) | 620 |
| BslI | CCNNNNNNNGG | 3 cut(s) | 64, 199, 515 |
| BsmAI | GTCTC | 5 cut(s) | 32, 360, 473, 554, 651 |
| BsmFI | GGGAC | 1 cut(s) | 620 |
| BsnI | GGCC | 1 cut(s) | 631 |
| Bsp143I | GATC | 3 cut(s) | 520, 586, 655 |
| BspACI | CCGC | 3 cut(s) | 298, 391, 496 |
| BspANI | GGCC | 1 cut(s) | 631 |
| BspHI | TCATGA | 1 cut(s) | 153 |
| BspLI | GGNNCC | 2 cut(s) | 68, 444 |
| BspPI | GGATC | 1 cut(s) | 650 |
| BspQI | GCTCTTC | 1 cut(s) | 348 |
| BspTI | CTTAAG | 1 cut(s) | 89 |
| BsrI | ACTGG | 2 cut(s) | 49, 431 |
| BssMI | GATC | 3 cut(s) | 520, 586, 655 |
| Bst4CI | ACNGT | 1 cut(s) | 565 |
| Bst6I | CTCTTC | 1 cut(s) | 348 |
| BstAFI | CTTAAG | 1 cut(s) | 89 |
| BstENI | CCTNNNNNAGG | 1 cut(s) | 197 |
| BstF5I | GGATG | 3 cut(s) | 114, 492, 604 |
| BstH2I | RGCGCY | 1 cut(s) | 433 |
| BstHHI | GCGC | 3 cut(s) | 50, 81, 432 |
| BstKTI | GATC | 3 cut(s) | 523, 589, 658 |
| BstMAI | GTCTC | 5 cut(s) | 32, 360, 473, 554, 651 |
| BstMBI | GATC | 3 cut(s) | 520, 586, 655 |
| BstV1I | GCAGC | 1 cut(s) | 247 |
| BstV2I | GAAGAC | 2 cut(s) | 210, 559 |
| BsuI | GTATCC | 1 cut(s) | 47 |
| BsuRI | GGCC | 1 cut(s) | 631 |
| BtgZI | GCGATG | 1 cut(s) | 298 |
| BtsCI | GGATG | 3 cut(s) | 114, 492, 604 |
| CciI | TCATGA | 1 cut(s) | 153 |
| CfoI | GCGC | 3 cut(s) | 50, 81, 432 |
| Cfr13I | GGNCC | 2 cut(s) | 67, 443 |
| CseI | GACGC | 1 cut(s) | 182 |
| Csp6I | GTAC | 1 cut(s) | 403 |
| CspCI | CAANNNNNGTGG | 2 cut(s) | 520, 555 |
| CviAII | CATG | 3 cut(s) | 154, 166, 595 |
| CviQI | GTAC | 1 cut(s) | 403 |
| DpnI | GATC | 3 cut(s) | 522, 588, 657 |
| DpnII | GATC | 3 cut(s) | 520, 586, 655 |
| Eam1104I | CTCTTC | 1 cut(s) | 348 |
| EarI | CTCTTC | 1 cut(s) | 348 |
| EciI | GGCGGA | 1 cut(s) | 485 |
| Eco47I | GGWCC | 2 cut(s) | 67, 443 |
| EcoNI | CCTNNNNNAGG | 1 cut(s) | 197 |
| EcoO109I | RGGNCCY | 1 cut(s) | 443 |
| FaeI | CATG | 3 cut(s) | 157, 169, 598 |
| FalI | AAGNNNNNCTT | 4 cut(s) | 8, 40, 507, 539 |
| FaqI | GGGAC | 1 cut(s) | 620 |
| FatI | CATG | 3 cut(s) | 153, 165, 594 |
| FblI | GTMKAC | 1 cut(s) | 380 |
| Fnu4HI | GCNGC | 1 cut(s) | 236 |
| FokI | GGATG | 3 cut(s) | 101, 479, 611 |
| Fsp4HI | GCNGC | 1 cut(s) | 236 |
| FspBI | CTAG | 3 cut(s) | 35, 420, 534 |
| GlaI | GCGC | 3 cut(s) | 49, 80, 431 |
| GluI | GCNGC | 1 cut(s) | 236 |
| HaeII | RGCGCY | 1 cut(s) | 433 |
| HaeIII | GGCC | 1 cut(s) | 631 |
| HgaI | GACGC | 1 cut(s) | 182 |
| HhaI | GCGC | 3 cut(s) | 50, 81, 432 |
| Hin1II | CATG | 3 cut(s) | 157, 169, 598 |
| Hin6I | GCGC | 3 cut(s) | 48, 79, 430 |
| HinP1I | GCGC | 3 cut(s) | 48, 79, 430 |
| HinfI | GANTC | 2 cut(s) | 257, 481 |
| Hpy166II | GTNNAC | 1 cut(s) | 381 |
| Hpy188I | TCNGA | 4 cut(s) | 71, 337, 360, 591 |
| Hpy188III | TCNNGA | 5 cut(s) | 107, 154, 254, 269, 653 |
| Hpy8I | GTNNAC | 1 cut(s) | 381 |
| HpyCH4III | ACNGT | 1 cut(s) | 565 |
| HpyCH4IV | ACGT | 1 cut(s) | 249 |
| HpyCH4V | TGCA | 2 cut(s) | 468, 514 |
| HpySE526I | ACGT | 1 cut(s) | 249 |
| Hsp92II | CATG | 3 cut(s) | 157, 169, 598 |
| HspAI | GCGC | 3 cut(s) | 48, 79, 430 |
| Kzo9I | GATC | 3 cut(s) | 520, 586, 655 |
| LguI | GCTCTTC | 1 cut(s) | 348 |
| Lsp1109I | GCAGC | 1 cut(s) | 247 |
| MaeI | CTAG | 3 cut(s) | 35, 420, 534 |
| MaeII | ACGT | 1 cut(s) | 249 |
| MaeIII | GTNAC | 5 cut(s) | 5, 254, 412, 422, 548 |
| MalI | GATC | 3 cut(s) | 522, 588, 657 |
| MboI | GATC | 3 cut(s) | 520, 586, 655 |
| MboII | GAAGA | 3 cut(s) | 215, 335, 559 |
| MluCI | AATT | 3 cut(s) | 147, 373, 620 |
| MlyI | GAGTC | 2 cut(s) | 251, 475 |
| MmeI | TCCRAC | 1 cut(s) | 509 |
| MnlI | CCTC | 3 cut(s) | 193, 203, 305 |
| MroXI | GAANNNNTTC | 1 cut(s) | 342 |
| MseI | TTAA | 3 cut(s) | 90, 503, 664 |
| MslI | CAYNNNNRTG | 2 cut(s) | 168, 555 |
| MspCI | CTTAAG | 1 cut(s) | 89 |
| NdeII | GATC | 3 cut(s) | 520, 586, 655 |
| NlaIII | CATG | 3 cut(s) | 157, 169, 598 |
| NlaIV | GGNNCC | 2 cut(s) | 68, 444 |
| NmuCI | GTSAC | 3 cut(s) | 254, 422, 548 |
| PagI | TCATGA | 1 cut(s) | 153 |
| PciSI | GCTCTTC | 1 cut(s) | 348 |
| PdmI | GAANNNNTTC | 1 cut(s) | 342 |
| PkrI | GCNGC | 1 cut(s) | 237 |
| PleI | GAGTC | 2 cut(s) | 251, 475 |
| PpsI | GAGTC | 2 cut(s) | 251, 475 |
| PpuMI | RGGWCCY | 1 cut(s) | 443 |
| PsiI | TTATAA | 1 cut(s) | 330 |
| Psp1406I | AACGTT | 1 cut(s) | 249 |
| Psp5II | RGGWCCY | 1 cut(s) | 443 |
| PspN4I | GGNNCC | 2 cut(s) | 68, 444 |
| PspPI | GGNCC | 2 cut(s) | 67, 443 |
| PspPPI | RGGWCCY | 1 cut(s) | 443 |
| RsaI | GTAC | 1 cut(s) | 404 |
| RsaNI | GTAC | 1 cut(s) | 403 |
| RseI | CAYNNNNRTG | 2 cut(s) | 168, 555 |
| SapI | GCTCTTC | 1 cut(s) | 348 |
| SaqAI | TTAA | 3 cut(s) | 90, 503, 664 |
| SatI | GCNGC | 1 cut(s) | 236 |
| Sau3AI | GATC | 3 cut(s) | 520, 586, 655 |
| Sau96I | GGNCC | 2 cut(s) | 67, 443 |
| SchI | GAGTC | 2 cut(s) | 251, 475 |
| SinI | GGWCC | 2 cut(s) | 67, 443 |
| SmiMI | CAYNNNNRTG | 2 cut(s) | 168, 555 |
| SmlI | CTYRAG | 2 cut(s) | 89, 230 |
| SmoI | CTYRAG | 2 cut(s) | 89, 230 |
| Sse9I | AATT | 3 cut(s) | 147, 373, 620 |
| SsiI | CCGC | 3 cut(s) | 298, 391, 496 |
| SspMI | CTAG | 3 cut(s) | 35, 420, 534 |
| TaaI | ACNGT | 1 cut(s) | 565 |
| TaiI | ACGT | 1 cut(s) | 252 |
| TaqI | TCGA | 1 cut(s) | 654 |
| TasI | AATT | 3 cut(s) | 147, 373, 620 |
| Tru1I | TTAA | 3 cut(s) | 90, 503, 664 |
| Tru9I | TTAA | 3 cut(s) | 90, 503, 664 |
| TseFI | GTSAC | 3 cut(s) | 254, 422, 548 |
| TseI | GCWGC | 1 cut(s) | 235 |
| Tsp45I | GTSAC | 3 cut(s) | 254, 422, 548 |
| TspDTI | ATGAA | 2 cut(s) | 182, 201 |
| Vha464I | CTTAAG | 1 cut(s) | 89 |
| VpaK11BI | GGWCC | 2 cut(s) | 67, 443 |
| XagI | CCTNNNNNAGG | 1 cut(s) | 197 |
| XcmI | CCANNNNNNNNNTGG | 2 cut(s) | 216, 538 |
| XmiI | GTMKAC | 1 cut(s) | 380 |
| XmnI | GAANNNNTTC | 1 cut(s) | 342 |
| XspI | CTAG | 3 cut(s) | 35, 420, 534 |