No description available
| Domain Name | Pfam ID | Position | E-value | Description |
|---|---|---|---|---|
| Retrotran_gag_2 | PF14223 | 35 - 165 | 2.7e-08 | gag-polypeptide of LTR copia-type |
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AasI | GACNNNNNNGTC | 1 cut(s) | 729 |
| AccB7I | CCANNNNNTGG | 1 cut(s) | 1094 |
| AccII | CGCG | 2 cut(s) | 239, 986 |
| AccIII | TCCGGA | 1 cut(s) | 649 |
| AciI | CCGC | 2 cut(s) | 361, 763 |
| AclWI | GGATC | 5 cut(s) | 61, 74, 97, 109, 110 |
| AcsI | RAATTY | 1 cut(s) | 428 |
| AfaI | GTAC | 3 cut(s) | 112, 254, 989 |
| AfiI | CCNNNNNNNGG | 3 cut(s) | 262, 751, 1094 |
| AflII | CTTAAG | 1 cut(s) | 89 |
| AflIII | ACRYGT | 2 cut(s) | 799, 984 |
| AgsI | TTSAA | 4 cut(s) | 28, 167, 376, 869 |
| AjiI | CACGTC | 1 cut(s) | 136 |
| AjnI | CCWGG | 1 cut(s) | 937 |
| AluBI | AGCT | 6 cut(s) | 24, 155, 280, 509, 562, 584 |
| AluI | AGCT | 6 cut(s) | 24, 155, 280, 509, 562, 584 |
| Alw21I | GWGCWC | 2 cut(s) | 781, 877 |
| Alw26I | GTCTC | 2 cut(s) | 496, 926 |
| Alw44I | GTGCAC | 1 cut(s) | 777 |
| AlwI | GGATC | 5 cut(s) | 61, 74, 97, 109, 110 |
| AlwNI | CAGNNNCTG | 1 cut(s) | 1094 |
| Ama87I | CYCGRG | 1 cut(s) | 293 |
| Aor13HI | TCCGGA | 1 cut(s) | 649 |
| AoxI | GGCC | 1 cut(s) | 817 |
| ApaLI | GTGCAC | 1 cut(s) | 777 |
| ApeKI | GCWGC | 1 cut(s) | 298 |
| ApoI | RAATTY | 1 cut(s) | 428 |
| AseI | ATTAAT | 1 cut(s) | 500 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 405 |
| AspLEI | GCGC | 3 cut(s) | 50, 81, 241 |
| AspS9I | GGNCC | 1 cut(s) | 731 |
| AvaI | CYCGRG | 1 cut(s) | 293 |
| AvaII | GGWCC | 1 cut(s) | 731 |
| BaeGI | GKGCMC | 1 cut(s) | 781 |
| BamHI | GGATCC | 2 cut(s) | 66, 102 |
| BbsI | GAAGAC | 2 cut(s) | 273, 1074 |
| Bbv12I | GWGCWC | 2 cut(s) | 781, 877 |
| BbvI | GCAGC | 1 cut(s) | 310 |
| BccI | CCATC | 5 cut(s) | 92, 215, 342, 418, 1037 |
| BciT130I | CCWGG | 1 cut(s) | 939 |
| BciVI | GTATCC | 1 cut(s) | 47 |
| BcoDI | GTCTC | 2 cut(s) | 496, 926 |
| BfaI | CTAG | 3 cut(s) | 35, 537, 624 |
| BfrI | CTTAAG | 1 cut(s) | 89 |
| BfuI | GTATCC | 1 cut(s) | 47 |
| BisI | GCNGC | 1 cut(s) | 299 |
| BlsI | GCNGC | 1 cut(s) | 300 |
| Bme1390I | CCNGG | 1 cut(s) | 939 |
| Bme18I | GGWCC | 1 cut(s) | 731 |
| BmeT110I | CYCGRG | 1 cut(s) | 293 |
| BmgBI | CACGTC | 1 cut(s) | 136 |
| BmgT120I | GGNCC | 1 cut(s) | 731 |
| BmiI | GGNNCC | 5 cut(s) | 68, 104, 637, 785, 900 |
| BmrFI | CCNGG | 1 cut(s) | 939 |
| BmsI | GCATC | 4 cut(s) | 94, 552, 904, 974 |
| BpiI | GAAGAC | 2 cut(s) | 273, 1074 |
| BsaBI | GATNNNNATC | 2 cut(s) | 461, 1047 |
| BsaJI | CCNNGG | 3 cut(s) | 630, 675, 787 |
| BsaWI | WCCGGW | 2 cut(s) | 649, 827 |
| Bsc4I | CCNNNNNNNGG | 3 cut(s) | 262, 751, 1094 |
| Bse1I | ACTGG | 1 cut(s) | 1099 |
| Bse8I | GATNNNNATC | 2 cut(s) | 461, 1047 |
| BseAI | TCCGGA | 1 cut(s) | 649 |
| BseBI | CCWGG | 1 cut(s) | 939 |
| BseDI | CCNNGG | 3 cut(s) | 630, 675, 787 |
| BseGI | GGATG | 1 cut(s) | 965 |
| BseJI | GATNNNNATC | 2 cut(s) | 461, 1047 |
| BseLI | CCNNNNNNNGG | 3 cut(s) | 262, 751, 1094 |
| BseMII | CTCAG | 1 cut(s) | 98 |
| BseNI | ACTGG | 1 cut(s) | 1099 |
| BseRI | GAGGAG | 1 cut(s) | 135 |
| BseSI | GKGCMC | 1 cut(s) | 781 |
| BseXI | GCAGC | 1 cut(s) | 310 |
| Bsh1236I | CGCG | 2 cut(s) | 239, 986 |
| BshFI | GGCC | 1 cut(s) | 819 |
| BsiHKAI | GWGCWC | 2 cut(s) | 781, 877 |
| BsiHKCI | CYCGRG | 1 cut(s) | 293 |
| BsiSI | CCGG | 2 cut(s) | 650, 828 |
| BslFI | GGGAC | 1 cut(s) | 52 |
| BslI | CCNNNNNNNGG | 3 cut(s) | 262, 751, 1094 |
| BsmAI | GTCTC | 2 cut(s) | 496, 926 |
| BsmFI | GGGAC | 1 cut(s) | 52 |
| BsnI | GGCC | 1 cut(s) | 819 |
| BsoBI | CYCGRG | 1 cut(s) | 293 |
| Bsp1286I | GDGCHC | 2 cut(s) | 781, 877 |
| Bsp13I | TCCGGA | 1 cut(s) | 649 |
| Bsp143I | GATC | 7 cut(s) | 66, 102, 114, 462, 890, 1036, 1054 |
| BspACI | CCGC | 2 cut(s) | 361, 763 |
| BspANI | GGCC | 1 cut(s) | 819 |
| BspCNI | CTCAG | 1 cut(s) | 99 |
| BspEI | TCCGGA | 1 cut(s) | 649 |
| BspFNI | CGCG | 2 cut(s) | 239, 986 |
| BspHI | TCATGA | 3 cut(s) | 216, 556, 573 |
| BspLI | GGNNCC | 5 cut(s) | 68, 104, 637, 785, 900 |
| BspPI | GGATC | 5 cut(s) | 61, 74, 97, 109, 110 |
| BspTI | CTTAAG | 1 cut(s) | 89 |
| BsrI | ACTGG | 1 cut(s) | 1099 |
| BssECI | CCNNGG | 3 cut(s) | 630, 675, 787 |
| BssMI | GATC | 7 cut(s) | 66, 102, 114, 462, 890, 1036, 1054 |
| BssT1I | CCWWGG | 1 cut(s) | 675 |
| Bst2UI | CCWGG | 1 cut(s) | 939 |
| Bst4CI | ACNGT | 3 cut(s) | 382, 788, 863 |
| Bst6I | CTCTTC | 2 cut(s) | 336, 800 |
| BstAFI | CTTAAG | 1 cut(s) | 89 |
| BstC8I | GCNNGC | 2 cut(s) | 83, 777 |
| BstDEI | CTNAG | 3 cut(s) | 107, 337, 1058 |
| BstDSI | CCRYGG | 2 cut(s) | 630, 787 |
| BstENI | CCTNNNNNAGG | 1 cut(s) | 260 |
| BstF5I | GGATG | 1 cut(s) | 965 |
| BstFNI | CGCG | 2 cut(s) | 239, 986 |
| BstHHI | GCGC | 3 cut(s) | 50, 81, 241 |
| BstKTI | GATC | 7 cut(s) | 69, 105, 117, 465, 893, 1039, 1057 |
| BstMAI | GTCTC | 2 cut(s) | 496, 926 |
| BstMBI | GATC | 7 cut(s) | 66, 102, 114, 462, 890, 1036, 1054 |
| BstMWI | GCNNNNNNNGC | 6 cut(s) | 167, 176, 197, 881, 962, 1013 |
| BstNI | CCWGG | 1 cut(s) | 939 |
| BstNSI | RCATGY | 1 cut(s) | 960 |
| BstSCI | CCNGG | 1 cut(s) | 937 |
| BstSLI | GKGCMC | 1 cut(s) | 781 |
| BstUI | CGCG | 2 cut(s) | 239, 986 |
| BstV1I | GCAGC | 1 cut(s) | 310 |
| BstV2I | GAAGAC | 2 cut(s) | 273, 1074 |
| BstX2I | RGATCY | 2 cut(s) | 66, 102 |
| BstYI | RGATCY | 2 cut(s) | 66, 102 |
| BsuI | GTATCC | 1 cut(s) | 47 |
| BsuRI | GGCC | 1 cut(s) | 819 |
| BtgI | CCRYGG | 2 cut(s) | 630, 787 |
| BtrI | CACGTC | 1 cut(s) | 136 |
| BtsCI | GGATG | 1 cut(s) | 965 |
| BtsIMutI | CAGTG | 1 cut(s) | 447 |
| Cac8I | GCNNGC | 2 cut(s) | 83, 777 |
| CaiI | CAGNNNCTG | 1 cut(s) | 1094 |
| CciI | TCATGA | 3 cut(s) | 216, 556, 573 |
| CfoI | GCGC | 3 cut(s) | 50, 81, 241 |
| Cfr13I | GGNCC | 1 cut(s) | 731 |
| CseI | GACGC | 3 cut(s) | 245, 549, 693 |
| Csp6I | GTAC | 3 cut(s) | 111, 253, 988 |
| CviAII | CATG | 6 cut(s) | 217, 229, 557, 574, 957, 1024 |
| CviQI | GTAC | 3 cut(s) | 111, 253, 988 |
| DdeI | CTNAG | 3 cut(s) | 107, 337, 1058 |
| DpnI | GATC | 7 cut(s) | 68, 104, 116, 464, 892, 1038, 1056 |
| DpnII | GATC | 7 cut(s) | 66, 102, 114, 462, 890, 1036, 1054 |
| DrdI | GACNNNNNNGTC | 1 cut(s) | 729 |
| DseDI | GACNNNNNNGTC | 1 cut(s) | 729 |
| Eam1104I | CTCTTC | 2 cut(s) | 336, 800 |
| EarI | CTCTTC | 2 cut(s) | 336, 800 |
| Eco130I | CCWWGG | 1 cut(s) | 675 |
| Eco32I | GATATC | 1 cut(s) | 529 |
| Eco47I | GGWCC | 1 cut(s) | 731 |
| Eco88I | CYCGRG | 1 cut(s) | 293 |
| EcoNI | CCTNNNNNAGG | 1 cut(s) | 260 |
| EcoRI | GAATTC | 1 cut(s) | 428 |
| EcoRII | CCWGG | 1 cut(s) | 937 |
| EcoRV | GATATC | 1 cut(s) | 529 |
| EcoT14I | CCWWGG | 1 cut(s) | 675 |
| ErhI | CCWWGG | 1 cut(s) | 675 |
| FaeI | CATG | 6 cut(s) | 220, 232, 560, 577, 960, 1027 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 8, 40 |
| FaqI | GGGAC | 1 cut(s) | 52 |
| FatI | CATG | 6 cut(s) | 216, 228, 556, 573, 956, 1023 |
| Fnu4HI | GCNGC | 1 cut(s) | 299 |
| FokI | GGATG | 1 cut(s) | 952 |
| Fsp4HI | GCNGC | 1 cut(s) | 299 |
| FspBI | CTAG | 3 cut(s) | 35, 537, 624 |
| GlaI | GCGC | 3 cut(s) | 49, 80, 240 |
| GluI | GCNGC | 1 cut(s) | 299 |
| HaeIII | GGCC | 1 cut(s) | 819 |
| HapII | CCGG | 2 cut(s) | 650, 828 |
| HgaI | GACGC | 3 cut(s) | 245, 549, 693 |
| HhaI | GCGC | 3 cut(s) | 50, 81, 241 |
| Hin1II | CATG | 6 cut(s) | 220, 232, 560, 577, 960, 1027 |
| Hin6I | GCGC | 3 cut(s) | 48, 79, 239 |
| HinP1I | GCGC | 3 cut(s) | 48, 79, 239 |
| HinfI | GANTC | 2 cut(s) | 320, 653 |
| HpaII | CCGG | 2 cut(s) | 650, 828 |
| Hpy166II | GTNNAC | 4 cut(s) | 437, 779, 797, 932 |
| Hpy188I | TCNGA | 2 cut(s) | 400, 926 |
| Hpy8I | GTNNAC | 4 cut(s) | 437, 779, 797, 932 |
| HpyAV | CCTTC | 3 cut(s) | 493, 702, 749 |
| HpyCH4III | ACNGT | 3 cut(s) | 382, 788, 863 |
| HpyCH4IV | ACGT | 5 cut(s) | 135, 312, 579, 724, 799 |
| HpyCH4V | TGCA | 3 cut(s) | 497, 779, 980 |
| HpyF10VI | GCNNNNNNNGC | 6 cut(s) | 167, 176, 197, 881, 962, 1013 |
| HpyF3I | CTNAG | 3 cut(s) | 107, 337, 1058 |
| HpySE526I | ACGT | 5 cut(s) | 135, 312, 579, 724, 799 |
| Hsp92II | CATG | 6 cut(s) | 220, 232, 560, 577, 960, 1027 |
| HspAI | GCGC | 3 cut(s) | 48, 79, 239 |
| Kpn2I | TCCGGA | 1 cut(s) | 649 |
| Kzo9I | GATC | 7 cut(s) | 66, 102, 114, 462, 890, 1036, 1054 |
| LmnI | GCTCC | 3 cut(s) | 246, 691, 880 |
| Lsp1109I | GCAGC | 1 cut(s) | 310 |
| LweI | GCATC | 4 cut(s) | 94, 552, 904, 974 |
| MaeI | CTAG | 3 cut(s) | 35, 537, 624 |
| MaeII | ACGT | 5 cut(s) | 135, 312, 579, 724, 799 |
| MaeIII | GTNAC | 2 cut(s) | 5, 839 |
| MalI | GATC | 7 cut(s) | 68, 104, 116, 464, 892, 1038, 1056 |
| MboI | GATC | 7 cut(s) | 66, 102, 114, 462, 890, 1036, 1054 |
| MboII | GAAGA | 6 cut(s) | 278, 353, 622, 817, 1046, 1079 |
| MflI | RGATCY | 2 cut(s) | 66, 102 |
| MhlI | GDGCHC | 2 cut(s) | 781, 877 |
| MluCI | AATT | 8 cut(s) | 394, 428, 522, 564, 645, 658, 715, 1018 |
| MluI | ACGCGT | 1 cut(s) | 984 |
| MlyI | GAGTC | 1 cut(s) | 662 |
| MroI | TCCGGA | 1 cut(s) | 649 |
| MroXI | GAANNNNTTC | 1 cut(s) | 405 |
| MseI | TTAA | 3 cut(s) | 90, 500, 1108 |
| MslI | CAYNNNNRTG | 4 cut(s) | 215, 231, 605, 912 |
| MspCI | CTTAAG | 1 cut(s) | 89 |
| MspI | CCGG | 2 cut(s) | 650, 828 |
| MspR9I | CCNGG | 1 cut(s) | 939 |
| MvaI | CCWGG | 1 cut(s) | 939 |
| MvnI | CGCG | 2 cut(s) | 239, 986 |
| MwoI | GCNNNNNNNGC | 6 cut(s) | 167, 176, 197, 881, 962, 1013 |
| NdeII | GATC | 7 cut(s) | 66, 102, 114, 462, 890, 1036, 1054 |
| NlaIII | CATG | 6 cut(s) | 220, 232, 560, 577, 960, 1027 |
| NlaIV | GGNNCC | 5 cut(s) | 68, 104, 637, 785, 900 |
| NspI | RCATGY | 1 cut(s) | 960 |
| PaeR7I | CTCGAG | 1 cut(s) | 293 |
| PagI | TCATGA | 3 cut(s) | 216, 556, 573 |
| PcsI | WCGNNNNNNNCGW | 1 cut(s) | 691 |
| PdmI | GAANNNNTTC | 1 cut(s) | 405 |
| PfeI | GAWTC | 1 cut(s) | 320 |
| PflMI | CCANNNNNTGG | 1 cut(s) | 1094 |
| PkrI | GCNGC | 1 cut(s) | 300 |
| PleI | GAGTC | 1 cut(s) | 661 |
| PpsI | GAGTC | 1 cut(s) | 661 |
| PshBI | ATTAAT | 1 cut(s) | 500 |
| Psp6I | CCWGG | 1 cut(s) | 937 |
| PspGI | CCWGG | 1 cut(s) | 937 |
| PspN4I | GGNNCC | 5 cut(s) | 68, 104, 637, 785, 900 |
| PspPI | GGNCC | 1 cut(s) | 731 |
| PspXI | VCTCGAGB | 1 cut(s) | 293 |
| PstNI | CAGNNNCTG | 1 cut(s) | 1094 |
| PsuI | RGATCY | 2 cut(s) | 66, 102 |
| RsaI | GTAC | 3 cut(s) | 112, 254, 989 |
| RsaNI | GTAC | 3 cut(s) | 111, 253, 988 |
| RseI | CAYNNNNRTG | 4 cut(s) | 215, 231, 605, 912 |
| SaqAI | TTAA | 3 cut(s) | 90, 500, 1108 |
| SatI | GCNGC | 1 cut(s) | 299 |
| Sau3AI | GATC | 7 cut(s) | 66, 102, 114, 462, 890, 1036, 1054 |
| Sau96I | GGNCC | 1 cut(s) | 731 |
| SchI | GAGTC | 1 cut(s) | 662 |
| ScrFI | CCNGG | 1 cut(s) | 939 |
| SduI | GDGCHC | 2 cut(s) | 781, 877 |
| SfaNI | GCATC | 4 cut(s) | 94, 552, 904, 974 |
| Sfr274I | CTCGAG | 1 cut(s) | 293 |
| SinI | GGWCC | 1 cut(s) | 731 |
| SlaI | CTCGAG | 1 cut(s) | 293 |
| SmiMI | CAYNNNNRTG | 4 cut(s) | 215, 231, 605, 912 |
| SmlI | CTYRAG | 2 cut(s) | 89, 293 |
| SmoI | CTYRAG | 2 cut(s) | 89, 293 |
| Sse9I | AATT | 8 cut(s) | 394, 428, 522, 564, 645, 658, 715, 1018 |
| SsiI | CCGC | 2 cut(s) | 361, 763 |
| SspMI | CTAG | 3 cut(s) | 35, 537, 624 |
| StyD4I | CCNGG | 1 cut(s) | 937 |
| StyI | CCWWGG | 1 cut(s) | 675 |
| TaaI | ACNGT | 3 cut(s) | 382, 788, 863 |
| TaiI | ACGT | 5 cut(s) | 138, 315, 582, 727, 802 |
| TaqI | TCGA | 5 cut(s) | 294, 465, 520, 889, 1053 |
| TasI | AATT | 8 cut(s) | 394, 428, 522, 564, 645, 658, 715, 1018 |
| TfiI | GAWTC | 1 cut(s) | 320 |
| Tru1I | TTAA | 3 cut(s) | 90, 500, 1108 |
| Tru9I | TTAA | 3 cut(s) | 90, 500, 1108 |
| TscAI | CASTG | 1 cut(s) | 454 |
| TseI | GCWGC | 1 cut(s) | 298 |
| TspDTI | ATGAA | 4 cut(s) | 210, 245, 545, 590 |
| TspGWI | ACGGA | 3 cut(s) | 59, 305, 796 |
| TspRI | CASTG | 1 cut(s) | 454 |
| Van91I | CCANNNNNTGG | 1 cut(s) | 1094 |
| Vha464I | CTTAAG | 1 cut(s) | 89 |
| VneI | GTGCAC | 1 cut(s) | 777 |
| VpaK11BI | GGWCC | 1 cut(s) | 731 |
| VspI | ATTAAT | 1 cut(s) | 500 |
| XagI | CCTNNNNNAGG | 1 cut(s) | 260 |
| XapI | RAATTY | 1 cut(s) | 428 |
| XbaI | TCTAGA | 1 cut(s) | 623 |
| XceI | RCATGY | 1 cut(s) | 960 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 279 |
| XhoI | CTCGAG | 1 cut(s) | 293 |
| XmnI | GAANNNNTTC | 1 cut(s) | 405 |
| XspI | CTAG | 3 cut(s) | 35, 537, 624 |