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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AarI | CACCTGC | 1 cut(s) | 32 |
| Acc36I | ACCTGC | 1 cut(s) | 32 |
| AccB1I | GGYRCC | 1 cut(s) | 792 |
| AccB7I | CCANNNNNTGG | 1 cut(s) | 1022 |
| AccII | CGCG | 3 cut(s) | 347, 777, 914 |
| AccIII | TCCGGA | 1 cut(s) | 171 |
| AciI | CCGC | 5 cut(s) | 14, 69, 99, 238, 469 |
| AclWI | GGATC | 1 cut(s) | 1007 |
| AcoI | YGGCCR | 1 cut(s) | 151 |
| AcsI | RAATTY | 1 cut(s) | 536 |
| AcyI | GRCGYC | 1 cut(s) | 793 |
| AfaI | GTAC | 3 cut(s) | 362, 492, 917 |
| AfiI | CCNNNNNNNGG | 5 cut(s) | 149, 238, 370, 788, 1022 |
| AflIII | ACRYGT | 1 cut(s) | 912 |
| AgsI | TTSAA | 4 cut(s) | 275, 484, 995, 1003 |
| AhdI | GACNNNNNGTC | 1 cut(s) | 836 |
| AjiI | CACGTC | 1 cut(s) | 244 |
| AluBI | AGCT | 7 cut(s) | 118, 123, 198, 263, 287, 670, 692 |
| AluI | AGCT | 7 cut(s) | 118, 123, 198, 263, 287, 670, 692 |
| Alw21I | GWGCWC | 1 cut(s) | 888 |
| Alw26I | GTCTC | 3 cut(s) | 206, 604, 1013 |
| Alw44I | GTGCAC | 1 cut(s) | 884 |
| AlwI | GGATC | 1 cut(s) | 1007 |
| AlwNI | CAGNNNCTG | 1 cut(s) | 1022 |
| Ama87I | CYCGRG | 1 cut(s) | 401 |
| Aor13HI | TCCGGA | 1 cut(s) | 171 |
| AoxI | GGCC | 3 cut(s) | 127, 151, 1006 |
| ApaLI | GTGCAC | 1 cut(s) | 884 |
| ApeKI | GCWGC | 4 cut(s) | 41, 105, 136, 406 |
| ApoI | RAATTY | 1 cut(s) | 536 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 513 |
| AspLEI | GCGC | 4 cut(s) | 224, 349, 779, 795 |
| AspS9I | GGNCC | 1 cut(s) | 838 |
| AvaI | CYCGRG | 1 cut(s) | 401 |
| AvaII | GGWCC | 1 cut(s) | 838 |
| AxyI | CCTNAGG | 1 cut(s) | 810 |
| BaeGI | GKGCMC | 1 cut(s) | 888 |
| BanI | GGYRCC | 1 cut(s) | 792 |
| BbsI | GAAGAC | 3 cut(s) | 381, 584, 1002 |
| Bbv12I | GWGCWC | 1 cut(s) | 888 |
| BbvI | GCAGC | 4 cut(s) | 53, 117, 148, 418 |
| BccI | CCATC | 3 cut(s) | 450, 526, 604 |
| BcgI | CGANNNNNNTGC | 2 cut(s) | 16, 50 |
| BciVI | GTATCC | 1 cut(s) | 221 |
| BclI | TGATCA | 1 cut(s) | 570 |
| BcoDI | GTCTC | 3 cut(s) | 206, 604, 1013 |
| BfaI | CTAG | 3 cut(s) | 209, 645, 732 |
| BfmI | CTRYAG | 3 cut(s) | 58, 103, 894 |
| BfoI | RGCGCY | 1 cut(s) | 796 |
| BfuAI | ACCTGC | 1 cut(s) | 32 |
| BfuI | GTATCC | 1 cut(s) | 221 |
| BisI | GCNGC | 4 cut(s) | 42, 106, 137, 407 |
| BlpI | GCTNAGC | 2 cut(s) | 17, 119 |
| BlsI | GCNGC | 4 cut(s) | 43, 107, 138, 408 |
| Bme18I | GGWCC | 1 cut(s) | 838 |
| BmeRI | GACNNNNNGTC | 1 cut(s) | 836 |
| BmeT110I | CYCGRG | 1 cut(s) | 401 |
| BmgBI | CACGTC | 1 cut(s) | 244 |
| BmgT120I | GGNCC | 1 cut(s) | 838 |
| BmiI | GGNNCC | 2 cut(s) | 679, 794 |
| BmsI | GCATC | 1 cut(s) | 660 |
| BpiI | GAAGAC | 3 cut(s) | 381, 584, 1002 |
| BplI | GAGNNNNNCTC | 2 cut(s) | 187, 219 |
| BpmI | CTGGAG | 1 cut(s) | 779 |
| Bpu10I | CCTNAGC | 1 cut(s) | 124 |
| Bpu1102I | GCTNAGC | 2 cut(s) | 17, 119 |
| BsaBI | GATNNNNATC | 2 cut(s) | 569, 975 |
| BsaHI | GRCGYC | 1 cut(s) | 793 |
| BsaJI | CCNNGG | 2 cut(s) | 681, 738 |
| BsaWI | WCCGGW | 1 cut(s) | 171 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 50, 80 |
| Bsc4I | CCNNNNNNNGG | 5 cut(s) | 149, 238, 370, 788, 1022 |
| Bse118I | RCCGGY | 1 cut(s) | 132 |
| Bse1I | ACTGG | 2 cut(s) | 143, 1027 |
| Bse21I | CCTNAGG | 1 cut(s) | 810 |
| Bse8I | GATNNNNATC | 2 cut(s) | 569, 975 |
| BseAI | TCCGGA | 1 cut(s) | 171 |
| BseDI | CCNNGG | 2 cut(s) | 681, 738 |
| BseGI | GGATG | 2 cut(s) | 52, 180 |
| BseJI | GATNNNNATC | 2 cut(s) | 569, 975 |
| BseLI | CCNNNNNNNGG | 5 cut(s) | 149, 238, 370, 788, 1022 |
| BseMII | CTCAG | 2 cut(s) | 133, 138 |
| BseNI | ACTGG | 2 cut(s) | 143, 1027 |
| BseSI | GKGCMC | 1 cut(s) | 888 |
| BseXI | GCAGC | 4 cut(s) | 53, 117, 148, 418 |
| Bsh1236I | CGCG | 3 cut(s) | 347, 777, 914 |
| BshFI | GGCC | 3 cut(s) | 129, 153, 1008 |
| BshNI | GGYRCC | 1 cut(s) | 792 |
| BsiHKAI | GWGCWC | 1 cut(s) | 888 |
| BsiHKCI | CYCGRG | 1 cut(s) | 401 |
| BsiSI | CCGG | 3 cut(s) | 133, 150, 172 |
| BslFI | GGGAC | 1 cut(s) | 254 |
| BslI | CCNNNNNNNGG | 5 cut(s) | 149, 238, 370, 788, 1022 |
| BsmAI | GTCTC | 3 cut(s) | 206, 604, 1013 |
| BsmBI | CGTCTC | 1 cut(s) | 604 |
| BsmFI | GGGAC | 1 cut(s) | 254 |
| BsnI | GGCC | 3 cut(s) | 129, 153, 1008 |
| BsoBI | CYCGRG | 1 cut(s) | 401 |
| Bsp1286I | GDGCHC | 1 cut(s) | 888 |
| Bsp13I | TCCGGA | 1 cut(s) | 171 |
| Bsp143I | GATC | 4 cut(s) | 570, 964, 976, 1012 |
| Bsp1720I | GCTNAGC | 2 cut(s) | 17, 119 |
| Bsp19I | CCATGG | 1 cut(s) | 681 |
| BspACI | CCGC | 5 cut(s) | 14, 69, 99, 238, 469 |
| BspANI | GGCC | 3 cut(s) | 129, 153, 1008 |
| BspCNI | CTCAG | 2 cut(s) | 132, 137 |
| BspEI | TCCGGA | 1 cut(s) | 171 |
| BspFNI | CGCG | 3 cut(s) | 347, 777, 914 |
| BspHI | TCATGA | 1 cut(s) | 324 |
| BspLI | GGNNCC | 2 cut(s) | 679, 794 |
| BspMAI | CTGCAG | 1 cut(s) | 107 |
| BspMI | ACCTGC | 1 cut(s) | 32 |
| BspPI | GGATC | 1 cut(s) | 1007 |
| BspT107I | GGYRCC | 1 cut(s) | 792 |
| BsrFI | RCCGGY | 1 cut(s) | 132 |
| BsrI | ACTGG | 2 cut(s) | 143, 1027 |
| BssAI | RCCGGY | 1 cut(s) | 132 |
| BssECI | CCNNGG | 2 cut(s) | 681, 738 |
| BssMI | GATC | 4 cut(s) | 570, 964, 976, 1012 |
| BssNI | GRCGYC | 1 cut(s) | 793 |
| BssT1I | CCWWGG | 1 cut(s) | 681 |
| Bst4CI | ACNGT | 2 cut(s) | 62, 895 |
| BstACI | GRCGYC | 1 cut(s) | 793 |
| BstC8I | GCNNGC | 2 cut(s) | 103, 884 |
| BstDEI | CTNAG | 7 cut(s) | 17, 119, 124, 248, 445, 810, 986 |
| BstDSI | CCRYGG | 2 cut(s) | 681, 738 |
| BstENI | CCTNNNNNAGG | 2 cut(s) | 368, 786 |
| BstF5I | GGATG | 2 cut(s) | 52, 180 |
| BstFNI | CGCG | 3 cut(s) | 347, 777, 914 |
| BstH2I | RGCGCY | 1 cut(s) | 796 |
| BstHHI | GCGC | 4 cut(s) | 224, 349, 779, 795 |
| BstKTI | GATC | 4 cut(s) | 573, 967, 979, 1015 |
| BstMAI | GTCTC | 3 cut(s) | 206, 604, 1013 |
| BstMBI | GATC | 4 cut(s) | 570, 964, 976, 1012 |
| BstMWI | GCNNNNNNNGC | 5 cut(s) | 98, 244, 284, 305, 799 |
| BstSFI | CTRYAG | 3 cut(s) | 58, 103, 894 |
| BstSLI | GKGCMC | 1 cut(s) | 888 |
| BstUI | CGCG | 3 cut(s) | 347, 777, 914 |
| BstV1I | GCAGC | 4 cut(s) | 53, 117, 148, 418 |
| BstV2I | GAAGAC | 3 cut(s) | 381, 584, 1002 |
| BstX2I | RGATCY | 1 cut(s) | 1012 |
| BstYI | RGATCY | 1 cut(s) | 1012 |
| Bsu36I | CCTNAGG | 1 cut(s) | 810 |
| BsuI | GTATCC | 1 cut(s) | 221 |
| BsuRI | GGCC | 3 cut(s) | 129, 153, 1008 |
| BtgI | CCRYGG | 2 cut(s) | 681, 738 |
| BtrI | CACGTC | 1 cut(s) | 244 |
| BtsCI | GGATG | 2 cut(s) | 52, 180 |
| BtsIMutI | CAGTG | 1 cut(s) | 555 |
| BveI | ACCTGC | 1 cut(s) | 32 |
| Cac8I | GCNNGC | 2 cut(s) | 103, 884 |
| CaiI | CAGNNNCTG | 1 cut(s) | 1022 |
| CciI | TCATGA | 1 cut(s) | 324 |
| CfoI | GCGC | 4 cut(s) | 224, 349, 779, 795 |
| Cfr10I | RCCGGY | 1 cut(s) | 132 |
| Cfr13I | GGNCC | 1 cut(s) | 838 |
| CseI | GACGC | 2 cut(s) | 353, 657 |
| Csp6I | GTAC | 3 cut(s) | 361, 491, 916 |
| CviAII | CATG | 6 cut(s) | 83, 325, 337, 682, 919, 952 |
| CviQI | GTAC | 3 cut(s) | 361, 491, 916 |
| DdeI | CTNAG | 7 cut(s) | 17, 119, 124, 248, 445, 810, 986 |
| DinI | GGCGCC | 1 cut(s) | 794 |
| DpnI | GATC | 4 cut(s) | 572, 966, 978, 1014 |
| DpnII | GATC | 4 cut(s) | 570, 964, 976, 1012 |
| DriI | GACNNNNNGTC | 1 cut(s) | 836 |
| EaeI | YGGCCR | 1 cut(s) | 151 |
| Eam1105I | GACNNNNNGTC | 1 cut(s) | 836 |
| EciI | GGCGGA | 1 cut(s) | 88 |
| Eco130I | CCWWGG | 1 cut(s) | 681 |
| Eco47I | GGWCC | 1 cut(s) | 838 |
| Eco81I | CCTNAGG | 1 cut(s) | 810 |
| Eco88I | CYCGRG | 1 cut(s) | 401 |
| EcoNI | CCTNNNNNAGG | 2 cut(s) | 368, 786 |
| EcoRI | GAATTC | 1 cut(s) | 536 |
| EcoT14I | CCWWGG | 1 cut(s) | 681 |
| EgeI | GGCGCC | 1 cut(s) | 794 |
| EheI | GGCGCC | 1 cut(s) | 794 |
| ErhI | CCWWGG | 1 cut(s) | 681 |
| Esp3I | CGTCTC | 1 cut(s) | 604 |
| FaeI | CATG | 6 cut(s) | 86, 328, 340, 685, 922, 955 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 182, 214 |
| FaqI | GGGAC | 1 cut(s) | 254 |
| FatI | CATG | 6 cut(s) | 82, 324, 336, 681, 918, 951 |
| FauI | CCCGC | 2 cut(s) | 21, 231 |
| FbaI | TGATCA | 1 cut(s) | 570 |
| Fnu4HI | GCNGC | 4 cut(s) | 42, 106, 137, 407 |
| FokI | GGATG | 2 cut(s) | 39, 187 |
| Fsp4HI | GCNGC | 4 cut(s) | 42, 106, 137, 407 |
| FspBI | CTAG | 3 cut(s) | 209, 645, 732 |
| GlaI | GCGC | 4 cut(s) | 223, 348, 778, 794 |
| GluI | GCNGC | 4 cut(s) | 42, 106, 137, 407 |
| GsuI | CTGGAG | 1 cut(s) | 779 |
| HaeII | RGCGCY | 1 cut(s) | 796 |
| HaeIII | GGCC | 3 cut(s) | 129, 153, 1008 |
| HapII | CCGG | 3 cut(s) | 133, 150, 172 |
| HgaI | GACGC | 2 cut(s) | 353, 657 |
| HhaI | GCGC | 4 cut(s) | 224, 349, 779, 795 |
| Hin1I | GRCGYC | 1 cut(s) | 793 |
| Hin1II | CATG | 6 cut(s) | 86, 328, 340, 685, 922, 955 |
| Hin6I | GCGC | 4 cut(s) | 222, 347, 777, 793 |
| HinP1I | GCGC | 4 cut(s) | 222, 347, 777, 793 |
| HindIII | AAGCTT | 1 cut(s) | 668 |
| HinfI | GANTC | 3 cut(s) | 428, 580, 761 |
| HpaII | CCGG | 3 cut(s) | 133, 150, 172 |
| Hpy166II | GTNNAC | 2 cut(s) | 545, 886 |
| Hpy188I | TCNGA | 2 cut(s) | 508, 630 |
| Hpy8I | GTNNAC | 2 cut(s) | 545, 886 |
| HpyAV | CCTTC | 3 cut(s) | 601, 782, 856 |
| HpyCH4III | ACNGT | 2 cut(s) | 62, 895 |
| HpyCH4IV | ACGT | 4 cut(s) | 243, 420, 687, 923 |
| HpyCH4V | TGCA | 5 cut(s) | 27, 82, 105, 605, 886 |
| HpyF10VI | GCNNNNNNNGC | 5 cut(s) | 98, 244, 284, 305, 799 |
| HpyF3I | CTNAG | 7 cut(s) | 17, 119, 124, 248, 445, 810, 986 |
| HpySE526I | ACGT | 4 cut(s) | 243, 420, 687, 923 |
| Hsp92I | GRCGYC | 1 cut(s) | 793 |
| Hsp92II | CATG | 6 cut(s) | 86, 328, 340, 685, 922, 955 |
| HspAI | GCGC | 4 cut(s) | 222, 347, 777, 793 |
| KasI | GGCGCC | 1 cut(s) | 792 |
| Kpn2I | TCCGGA | 1 cut(s) | 171 |
| Ksp22I | TGATCA | 1 cut(s) | 570 |
| Kzo9I | GATC | 4 cut(s) | 570, 964, 976, 1012 |
| LmnI | GCTCC | 4 cut(s) | 208, 354, 677, 955 |
| Lsp1109I | GCAGC | 4 cut(s) | 53, 117, 148, 418 |
| LweI | GCATC | 1 cut(s) | 660 |
| MaeI | CTAG | 3 cut(s) | 209, 645, 732 |
| MaeII | ACGT | 4 cut(s) | 243, 420, 687, 923 |
| MaeIII | GTNAC | 2 cut(s) | 62, 179 |
| MalI | GATC | 4 cut(s) | 572, 966, 978, 1014 |
| MboI | GATC | 4 cut(s) | 570, 964, 976, 1012 |
| MboII | GAAGA | 6 cut(s) | 386, 589, 730, 953, 974, 1007 |
| MflI | RGATCY | 1 cut(s) | 1012 |
| MhlI | GDGCHC | 1 cut(s) | 888 |
| MluCI | AATT | 6 cut(s) | 502, 513, 536, 753, 766, 946 |
| MluI | ACGCGT | 1 cut(s) | 912 |
| Mly113I | GGCGCC | 1 cut(s) | 793 |
| MlyI | GAGTC | 2 cut(s) | 574, 770 |
| MnlI | CCTC | 8 cut(s) | 44, 106, 179, 264, 289, 364, 374, 476 |
| MroI | TCCGGA | 1 cut(s) | 171 |
| MroXI | GAANNNNTTC | 1 cut(s) | 513 |
| MseI | TTAA | 1 cut(s) | 1036 |
| MslI | CAYNNNNRTG | 2 cut(s) | 339, 713 |
| MspI | CCGG | 3 cut(s) | 133, 150, 172 |
| MvnI | CGCG | 3 cut(s) | 347, 777, 914 |
| MwoI | GCNNNNNNNGC | 5 cut(s) | 98, 244, 284, 305, 799 |
| NarI | GGCGCC | 1 cut(s) | 793 |
| NcoI | CCATGG | 1 cut(s) | 681 |
| NdeII | GATC | 4 cut(s) | 570, 964, 976, 1012 |
| NlaIII | CATG | 6 cut(s) | 86, 328, 340, 685, 922, 955 |
| NlaIV | GGNNCC | 2 cut(s) | 679, 794 |
| PaeR7I | CTCGAG | 1 cut(s) | 401 |
| PagI | TCATGA | 1 cut(s) | 324 |
| PaqCI | CACCTGC | 1 cut(s) | 32 |
| PdmI | GAANNNNTTC | 1 cut(s) | 513 |
| PfeI | GAWTC | 1 cut(s) | 428 |
| PflMI | CCANNNNNTGG | 1 cut(s) | 1022 |
| PkrI | GCNGC | 4 cut(s) | 43, 107, 138, 408 |
| PleI | GAGTC | 2 cut(s) | 574, 769 |
| PluTI | GGCGCC | 1 cut(s) | 796 |
| PpsI | GAGTC | 2 cut(s) | 574, 769 |
| PspN4I | GGNNCC | 2 cut(s) | 679, 794 |
| PspPI | GGNCC | 1 cut(s) | 838 |
| PspXI | VCTCGAGB | 1 cut(s) | 401 |
| PstI | CTGCAG | 1 cut(s) | 107 |
| PstNI | CAGNNNCTG | 1 cut(s) | 1022 |
| PsuI | RGATCY | 1 cut(s) | 1012 |
| RsaI | GTAC | 3 cut(s) | 362, 492, 917 |
| RsaNI | GTAC | 3 cut(s) | 361, 491, 916 |
| RseI | CAYNNNNRTG | 2 cut(s) | 339, 713 |
| SaqAI | TTAA | 1 cut(s) | 1036 |
| SatI | GCNGC | 4 cut(s) | 42, 106, 137, 407 |
| Sau3AI | GATC | 4 cut(s) | 570, 964, 976, 1012 |
| Sau96I | GGNCC | 1 cut(s) | 838 |
| SchI | GAGTC | 2 cut(s) | 574, 770 |
| SduI | GDGCHC | 1 cut(s) | 888 |
| SfaNI | GCATC | 1 cut(s) | 660 |
| SfcI | CTRYAG | 3 cut(s) | 58, 103, 894 |
| SfoI | GGCGCC | 1 cut(s) | 794 |
| Sfr274I | CTCGAG | 1 cut(s) | 401 |
| SinI | GGWCC | 1 cut(s) | 838 |
| SlaI | CTCGAG | 1 cut(s) | 401 |
| SmiMI | CAYNNNNRTG | 2 cut(s) | 339, 713 |
| SmlI | CTYRAG | 1 cut(s) | 401 |
| SmoI | CTYRAG | 1 cut(s) | 401 |
| Sse9I | AATT | 6 cut(s) | 502, 513, 536, 753, 766, 946 |
| SsiI | CCGC | 5 cut(s) | 14, 69, 99, 238, 469 |
| SspDI | GGCGCC | 1 cut(s) | 792 |
| SspMI | CTAG | 3 cut(s) | 209, 645, 732 |
| StyI | CCWWGG | 1 cut(s) | 681 |
| TaaI | ACNGT | 2 cut(s) | 62, 895 |
| TaiI | ACGT | 4 cut(s) | 246, 423, 690, 926 |
| TaqI | TCGA | 1 cut(s) | 402 |
| TasI | AATT | 6 cut(s) | 502, 513, 536, 753, 766, 946 |
| TatI | WGTACW | 1 cut(s) | 490 |
| TfiI | GAWTC | 1 cut(s) | 428 |
| Tru1I | TTAA | 1 cut(s) | 1036 |
| Tru9I | TTAA | 1 cut(s) | 1036 |
| TscAI | CASTG | 1 cut(s) | 562 |
| TseI | GCWGC | 4 cut(s) | 41, 105, 136, 406 |
| TspDTI | ATGAA | 4 cut(s) | 318, 353, 653, 875 |
| TspGWI | ACGGA | 1 cut(s) | 562 |
| TspRI | CASTG | 1 cut(s) | 562 |
| Van91I | CCANNNNNTGG | 1 cut(s) | 1022 |
| VneI | GTGCAC | 1 cut(s) | 884 |
| VpaK11BI | GGWCC | 1 cut(s) | 838 |
| XagI | CCTNNNNNAGG | 2 cut(s) | 368, 786 |
| XapI | RAATTY | 1 cut(s) | 536 |
| XbaI | TCTAGA | 1 cut(s) | 731 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 387 |
| XhoI | CTCGAG | 1 cut(s) | 401 |
| XmnI | GAANNNNTTC | 1 cut(s) | 513 |
| XspI | CTAG | 3 cut(s) | 209, 645, 732 |