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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AanI | TTATAA | 2 cut(s) | 303, 348 |
| AasI | GACNNNNNNGTC | 2 cut(s) | 86, 566 |
| AatII | GACGTC | 1 cut(s) | 526 |
| AccB1I | GGYRCC | 1 cut(s) | 503 |
| AccBSI | CCGCTC | 1 cut(s) | 373 |
| AciI | CCGC | 2 cut(s) | 373, 621 |
| AcoI | YGGCCR | 2 cut(s) | 475, 490 |
| AcvI | CACGTG | 1 cut(s) | 464 |
| AcyI | GRCGYC | 2 cut(s) | 504, 523 |
| AdeI | CACNNNGTG | 1 cut(s) | 533 |
| AfeI | AGCGCT | 1 cut(s) | 36 |
| AfiI | CCNNNNNNNGG | 3 cut(s) | 430, 465, 518 |
| AflIII | ACRYGT | 1 cut(s) | 461 |
| AgsI | TTSAA | 6 cut(s) | 41, 85, 121, 255, 309, 592 |
| AhdI | GACNNNNNGTC | 2 cut(s) | 121, 188 |
| AjiI | CACGTC | 1 cut(s) | 473 |
| AjuI | GAANNNNNNNTTGG | 2 cut(s) | 33, 65 |
| AleI | CACNNNNGTG | 1 cut(s) | 581 |
| AluBI | AGCT | 3 cut(s) | 149, 205, 269 |
| AluI | AGCT | 3 cut(s) | 149, 205, 269 |
| Alw21I | GWGCWC | 2 cut(s) | 538, 612 |
| Alw26I | GTCTC | 2 cut(s) | 241, 463 |
| Alw44I | GTGCAC | 2 cut(s) | 534, 608 |
| Aor51HI | AGCGCT | 1 cut(s) | 36 |
| AoxI | GGCC | 3 cut(s) | 311, 475, 490 |
| ApaLI | GTGCAC | 2 cut(s) | 534, 608 |
| AspA2I | CCTAGG | 1 cut(s) | 515 |
| AspLEI | GCGC | 3 cut(s) | 37, 485, 506 |
| AspS9I | GGNCC | 3 cut(s) | 88, 312, 410 |
| AsuHPI | GGTGA | 1 cut(s) | 566 |
| AvaII | GGWCC | 2 cut(s) | 88, 410 |
| AvrII | CCTAGG | 1 cut(s) | 515 |
| AxyI | CCTNAGG | 1 cut(s) | 336 |
| BaeGI | GKGCMC | 2 cut(s) | 538, 612 |
| BanI | GGYRCC | 1 cut(s) | 503 |
| BbrPI | CACGTG | 1 cut(s) | 464 |
| Bbv12I | GWGCWC | 2 cut(s) | 538, 612 |
| BccI | CCATC | 1 cut(s) | 545 |
| BceAI | ACGGC | 1 cut(s) | 462 |
| BcoDI | GTCTC | 2 cut(s) | 241, 463 |
| BfaI | CTAG | 1 cut(s) | 516 |
| BfmI | CTRYAG | 1 cut(s) | 579 |
| BfoI | RGCGCY | 3 cut(s) | 38, 486, 507 |
| BisI | GCNGC | 1 cut(s) | 621 |
| BlnI | CCTAGG | 1 cut(s) | 515 |
| BlsI | GCNGC | 1 cut(s) | 622 |
| Bme18I | GGWCC | 2 cut(s) | 88, 410 |
| BmeRI | GACNNNNNGTC | 2 cut(s) | 121, 188 |
| BmgBI | CACGTC | 1 cut(s) | 473 |
| BmgT120I | GGNCC | 3 cut(s) | 88, 312, 410 |
| BmiI | GGNNCC | 2 cut(s) | 411, 505 |
| BmsI | GCATC | 1 cut(s) | 607 |
| BsaAI | YACGTR | 1 cut(s) | 464 |
| BsaHI | GRCGYC | 2 cut(s) | 504, 523 |
| BsaJI | CCNNGG | 3 cut(s) | 478, 493, 515 |
| Bsc4I | CCNNNNNNNGG | 3 cut(s) | 430, 465, 518 |
| Bse21I | CCTNAGG | 1 cut(s) | 336 |
| Bse3DI | GCAATG | 1 cut(s) | 61 |
| BseDI | CCNNGG | 3 cut(s) | 478, 493, 515 |
| BseGI | GGATG | 3 cut(s) | 285, 407, 622 |
| BseLI | CCNNNNNNNGG | 3 cut(s) | 430, 465, 518 |
| BseMI | GCAATG | 1 cut(s) | 61 |
| BseMII | CTCAG | 4 cut(s) | 186, 252, 261, 327 |
| BseRI | GAGGAG | 1 cut(s) | 62 |
| BseSI | GKGCMC | 2 cut(s) | 538, 612 |
| BshFI | GGCC | 3 cut(s) | 313, 477, 492 |
| BshNI | GGYRCC | 1 cut(s) | 503 |
| BsiHKAI | GWGCWC | 2 cut(s) | 538, 612 |
| BslFI | GGGAC | 3 cut(s) | 334, 405, 534 |
| BslI | CCNNNNNNNGG | 3 cut(s) | 430, 465, 518 |
| BsmAI | GTCTC | 2 cut(s) | 241, 463 |
| BsmBI | CGTCTC | 2 cut(s) | 241, 463 |
| BsmFI | GGGAC | 3 cut(s) | 334, 405, 534 |
| BsnI | GGCC | 3 cut(s) | 313, 477, 492 |
| Bsp1286I | GDGCHC | 2 cut(s) | 538, 612 |
| Bsp143I | GATC | 1 cut(s) | 6 |
| Bsp19I | CCATGG | 1 cut(s) | 493 |
| BspACI | CCGC | 2 cut(s) | 373, 621 |
| BspANI | GGCC | 3 cut(s) | 313, 477, 492 |
| BspCNI | CTCAG | 4 cut(s) | 187, 251, 262, 328 |
| BspLI | GGNNCC | 2 cut(s) | 411, 505 |
| BspQI | GCTCTTC | 1 cut(s) | 36 |
| BspT107I | GGYRCC | 1 cut(s) | 503 |
| BsrBI | CCGCTC | 1 cut(s) | 373 |
| BsrDI | GCAATG | 1 cut(s) | 61 |
| BssECI | CCNNGG | 3 cut(s) | 478, 493, 515 |
| BssMI | GATC | 1 cut(s) | 6 |
| BssNI | GRCGYC | 2 cut(s) | 504, 523 |
| BssT1I | CCWWGG | 2 cut(s) | 493, 515 |
| Bst6I | CTCTTC | 1 cut(s) | 36 |
| BstACI | GRCGYC | 2 cut(s) | 504, 523 |
| BstBAI | YACGTR | 1 cut(s) | 464 |
| BstDEI | CTNAG | 6 cut(s) | 195, 238, 270, 324, 336, 381 |
| BstDSI | CCRYGG | 2 cut(s) | 478, 493 |
| BstF5I | GGATG | 3 cut(s) | 285, 407, 622 |
| BstH2I | RGCGCY | 3 cut(s) | 38, 486, 507 |
| BstHHI | GCGC | 3 cut(s) | 37, 485, 506 |
| BstKTI | GATC | 1 cut(s) | 9 |
| BstMAI | GTCTC | 2 cut(s) | 241, 463 |
| BstMBI | GATC | 1 cut(s) | 6 |
| BstMWI | GCNNNNNNNGC | 2 cut(s) | 43, 489 |
| BstNSI | RCATGY | 2 cut(s) | 398, 458 |
| BstSFI | CTRYAG | 1 cut(s) | 579 |
| BstSLI | GKGCMC | 2 cut(s) | 538, 612 |
| BstXI | CCANNNNNNTGG | 1 cut(s) | 500 |
| Bsu36I | CCTNAGG | 1 cut(s) | 336 |
| BsuRI | GGCC | 3 cut(s) | 313, 477, 492 |
| BtgI | CCRYGG | 2 cut(s) | 478, 493 |
| BtrI | CACGTC | 1 cut(s) | 473 |
| BtsCI | GGATG | 3 cut(s) | 285, 407, 622 |
| BtsIMutI | CAGTG | 1 cut(s) | 192 |
| CfoI | GCGC | 3 cut(s) | 37, 485, 506 |
| Cfr13I | GGNCC | 3 cut(s) | 88, 312, 410 |
| CviAII | CATG | 5 cut(s) | 166, 278, 395, 455, 494 |
| CviJI | RGCY | 6 cut(s) | 149, 205, 269, 313, 477, 492 |
| CviKI_1 | RGCY | 6 cut(s) | 149, 205, 269, 313, 477, 492 |
| DdeI | CTNAG | 6 cut(s) | 195, 238, 270, 324, 336, 381 |
| DinI | GGCGCC | 1 cut(s) | 505 |
| DpnI | GATC | 1 cut(s) | 8 |
| DpnII | GATC | 1 cut(s) | 6 |
| DraIII | CACNNNGTG | 1 cut(s) | 533 |
| DrdI | GACNNNNNNGTC | 2 cut(s) | 86, 566 |
| DriI | GACNNNNNGTC | 2 cut(s) | 121, 188 |
| DseDI | GACNNNNNNGTC | 2 cut(s) | 86, 566 |
| EaeI | YGGCCR | 2 cut(s) | 475, 490 |
| Eam1104I | CTCTTC | 1 cut(s) | 36 |
| Eam1105I | GACNNNNNGTC | 2 cut(s) | 121, 188 |
| EarI | CTCTTC | 1 cut(s) | 36 |
| Eco130I | CCWWGG | 2 cut(s) | 493, 515 |
| Eco47I | GGWCC | 2 cut(s) | 88, 410 |
| Eco47III | AGCGCT | 1 cut(s) | 36 |
| Eco72I | CACGTG | 1 cut(s) | 464 |
| Eco81I | CCTNAGG | 1 cut(s) | 336 |
| EcoT14I | CCWWGG | 2 cut(s) | 493, 515 |
| EgeI | GGCGCC | 1 cut(s) | 505 |
| EheI | GGCGCC | 1 cut(s) | 505 |
| ErhI | CCWWGG | 2 cut(s) | 493, 515 |
| Esp3I | CGTCTC | 2 cut(s) | 241, 463 |
| FaeI | CATG | 5 cut(s) | 169, 281, 398, 458, 497 |
| FaqI | GGGAC | 3 cut(s) | 334, 405, 534 |
| FatI | CATG | 5 cut(s) | 165, 277, 394, 454, 493 |
| FauNDI | CATATG | 1 cut(s) | 415 |
| Fnu4HI | GCNGC | 1 cut(s) | 621 |
| FokI | GGATG | 3 cut(s) | 272, 414, 629 |
| Fsp4HI | GCNGC | 1 cut(s) | 621 |
| FspBI | CTAG | 1 cut(s) | 516 |
| GlaI | GCGC | 3 cut(s) | 36, 484, 505 |
| GluI | GCNGC | 1 cut(s) | 621 |
| HaeII | RGCGCY | 3 cut(s) | 38, 486, 507 |
| HaeIII | GGCC | 3 cut(s) | 313, 477, 492 |
| HhaI | GCGC | 3 cut(s) | 37, 485, 506 |
| Hin1I | GRCGYC | 2 cut(s) | 504, 523 |
| Hin1II | CATG | 5 cut(s) | 169, 281, 398, 458, 497 |
| Hin6I | GCGC | 3 cut(s) | 35, 483, 504 |
| HinP1I | GCGC | 3 cut(s) | 35, 483, 504 |
| HincII | GTYRAC | 1 cut(s) | 571 |
| HindII | GTYRAC | 1 cut(s) | 571 |
| HinfI | GANTC | 3 cut(s) | 65, 174, 376 |
| HphI | GGTGA | 1 cut(s) | 566 |
| Hpy166II | GTNNAC | 5 cut(s) | 527, 536, 571, 586, 610 |
| Hpy188I | TCNGA | 4 cut(s) | 11, 145, 213, 598 |
| Hpy188III | TCNNGA | 1 cut(s) | 335 |
| Hpy8I | GTNNAC | 5 cut(s) | 527, 536, 571, 586, 610 |
| HpyAV | CCTTC | 4 cut(s) | 79, 238, 428, 536 |
| HpyCH4IV | ACGT | 4 cut(s) | 463, 472, 523, 532 |
| HpyCH4V | TGCA | 4 cut(s) | 353, 366, 536, 610 |
| HpyF10VI | GCNNNNNNNGC | 2 cut(s) | 43, 489 |
| HpyF3I | CTNAG | 6 cut(s) | 195, 238, 270, 324, 336, 381 |
| HpySE526I | ACGT | 4 cut(s) | 463, 472, 523, 532 |
| Hsp92I | GRCGYC | 2 cut(s) | 504, 523 |
| Hsp92II | CATG | 5 cut(s) | 169, 281, 398, 458, 497 |
| HspAI | GCGC | 3 cut(s) | 35, 483, 504 |
| KasI | GGCGCC | 1 cut(s) | 503 |
| Kzo9I | GATC | 1 cut(s) | 6 |
| LguI | GCTCTTC | 1 cut(s) | 36 |
| LmnI | GCTCC | 2 cut(s) | 96, 370 |
| LpnPI | CCDG | 3 cut(s) | 201, 348, 384 |
| LweI | GCATC | 1 cut(s) | 607 |
| MaeI | CTAG | 1 cut(s) | 516 |
| MaeII | ACGT | 4 cut(s) | 463, 472, 523, 532 |
| MaeIII | GTNAC | 1 cut(s) | 190 |
| MalI | GATC | 1 cut(s) | 8 |
| MbiI | CCGCTC | 1 cut(s) | 373 |
| MboI | GATC | 1 cut(s) | 6 |
| MboII | GAAGA | 2 cut(s) | 53, 307 |
| MhlI | GDGCHC | 2 cut(s) | 538, 612 |
| MluCI | AATT | 8 cut(s) | 23, 100, 139, 207, 243, 298, 304, 343 |
| Mly113I | GGCGCC | 1 cut(s) | 504 |
| MnlI | CCTC | 5 cut(s) | 80, 83, 331, 452, 584 |
| MslI | CAYNNNNRTG | 4 cut(s) | 290, 498, 581, 615 |
| MwoI | GCNNNNNNNGC | 2 cut(s) | 43, 489 |
| NarI | GGCGCC | 1 cut(s) | 504 |
| NcoI | CCATGG | 1 cut(s) | 493 |
| NdeI | CATATG | 1 cut(s) | 415 |
| NdeII | GATC | 1 cut(s) | 6 |
| NlaIII | CATG | 5 cut(s) | 169, 281, 398, 458, 497 |
| NlaIV | GGNNCC | 2 cut(s) | 411, 505 |
| NmuCI | GTSAC | 1 cut(s) | 190 |
| NspI | RCATGY | 2 cut(s) | 398, 458 |
| OliI | CACNNNNGTG | 1 cut(s) | 581 |
| PciSI | GCTCTTC | 1 cut(s) | 36 |
| PcsI | WCGNNNNNNNCGW | 2 cut(s) | 469, 529 |
| PfeI | GAWTC | 3 cut(s) | 65, 174, 376 |
| PkrI | GCNGC | 1 cut(s) | 622 |
| PluTI | GGCGCC | 1 cut(s) | 507 |
| PmaCI | CACGTG | 1 cut(s) | 464 |
| PmlI | CACGTG | 1 cut(s) | 464 |
| Ppu21I | YACGTR | 1 cut(s) | 464 |
| PsiI | TTATAA | 2 cut(s) | 303, 348 |
| PspCI | CACGTG | 1 cut(s) | 464 |
| PspN4I | GGNNCC | 2 cut(s) | 411, 505 |
| PspPI | GGNCC | 3 cut(s) | 88, 312, 410 |
| RseI | CAYNNNNRTG | 4 cut(s) | 290, 498, 581, 615 |
| SapI | GCTCTTC | 1 cut(s) | 36 |
| SatI | GCNGC | 1 cut(s) | 621 |
| Sau3AI | GATC | 1 cut(s) | 6 |
| Sau96I | GGNCC | 3 cut(s) | 88, 312, 410 |
| SduI | GDGCHC | 2 cut(s) | 538, 612 |
| SfaNI | GCATC | 1 cut(s) | 607 |
| SfcI | CTRYAG | 1 cut(s) | 579 |
| SfoI | GGCGCC | 1 cut(s) | 505 |
| SinI | GGWCC | 2 cut(s) | 88, 410 |
| SmiMI | CAYNNNNRTG | 4 cut(s) | 290, 498, 581, 615 |
| Sse9I | AATT | 8 cut(s) | 23, 100, 139, 207, 243, 298, 304, 343 |
| SsiI | CCGC | 2 cut(s) | 373, 621 |
| SspDI | GGCGCC | 1 cut(s) | 503 |
| SspMI | CTAG | 1 cut(s) | 516 |
| StyI | CCWWGG | 2 cut(s) | 493, 515 |
| TaiI | ACGT | 4 cut(s) | 466, 475, 526, 535 |
| TaqI | TCGA | 1 cut(s) | 5 |
| TasI | AATT | 8 cut(s) | 23, 100, 139, 207, 243, 298, 304, 343 |
| TauI | GCSGC | 1 cut(s) | 623 |
| TfiI | GAWTC | 3 cut(s) | 65, 174, 376 |
| TscAI | CASTG | 1 cut(s) | 199 |
| TseFI | GTSAC | 1 cut(s) | 190 |
| Tsp45I | GTSAC | 1 cut(s) | 190 |
| TspGWI | ACGGA | 1 cut(s) | 115 |
| TspRI | CASTG | 1 cut(s) | 199 |
| VneI | GTGCAC | 2 cut(s) | 534, 608 |
| VpaK11BI | GGWCC | 2 cut(s) | 88, 410 |
| XceI | RCATGY | 2 cut(s) | 398, 458 |
| XmaJI | CCTAGG | 1 cut(s) | 515 |
| XspI | CTAG | 1 cut(s) | 516 |
| ZraI | GACGTC | 1 cut(s) | 524 |