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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AasI | GACNNNNNNGTC | 2 cut(s) | 34, 1152 |
| AccB1I | GGYRCC | 2 cut(s) | 344, 992 |
| AccI | GTMKAC | 3 cut(s) | 52, 68, 213 |
| AccIII | TCCGGA | 1 cut(s) | 1072 |
| AciI | CCGC | 3 cut(s) | 435, 444, 465 |
| AclI | AACGTT | 2 cut(s) | 142, 823 |
| AcoI | YGGCCR | 1 cut(s) | 560 |
| AcsI | RAATTY | 2 cut(s) | 365, 379 |
| AcyI | GRCGYC | 1 cut(s) | 114 |
| AfaI | GTAC | 2 cut(s) | 776, 1201 |
| AfiI | CCNNNNNNNGG | 3 cut(s) | 572, 652, 784 |
| AflIII | ACRYGT | 1 cut(s) | 1222 |
| AgsI | TTSAA | 6 cut(s) | 82, 303, 389, 406, 585, 689 |
| AjiI | CACGTC | 1 cut(s) | 658 |
| AjnI | CCWGG | 1 cut(s) | 282 |
| Alw26I | GTCTC | 3 cut(s) | 329, 620, 919 |
| Ama87I | CYCGRG | 2 cut(s) | 623, 815 |
| Aor13HI | TCCGGA | 1 cut(s) | 1072 |
| AoxI | GGCC | 3 cut(s) | 458, 560, 1242 |
| ApeKI | GCWGC | 3 cut(s) | 41, 446, 517 |
| ApoI | RAATTY | 2 cut(s) | 365, 379 |
| AspLEI | GCGC | 1 cut(s) | 1094 |
| AspS9I | GGNCC | 3 cut(s) | 19, 251, 1154 |
| AsuHPI | GGTGA | 1 cut(s) | 1273 |
| AvaI | CYCGRG | 2 cut(s) | 623, 815 |
| AvaII | GGWCC | 3 cut(s) | 19, 251, 1154 |
| BalI | TGGCCA | 1 cut(s) | 562 |
| BanI | GGYRCC | 2 cut(s) | 344, 992 |
| BanII | GRGCYC | 1 cut(s) | 765 |
| BauI | CACGAG | 1 cut(s) | 491 |
| BbsI | GAAGAC | 2 cut(s) | 795, 899 |
| BbvI | GCAGC | 3 cut(s) | 28, 458, 529 |
| BccI | CCATC | 5 cut(s) | 25, 30, 332, 561, 737 |
| BcgI | CGANNNNNNTGC | 4 cut(s) | 126, 141, 160, 175 |
| BciT130I | CCWGG | 1 cut(s) | 284 |
| BciVI | GTATCC | 2 cut(s) | 179, 635 |
| BcoDI | GTCTC | 3 cut(s) | 329, 620, 919 |
| BfaI | CTAG | 5 cut(s) | 320, 525, 546, 960, 1047 |
| BfmI | CTRYAG | 1 cut(s) | 515 |
| BfuI | GTATCC | 2 cut(s) | 179, 635 |
| BglII | AGATCT | 2 cut(s) | 10, 276 |
| BisI | GCNGC | 5 cut(s) | 42, 436, 447, 466, 518 |
| BlsI | GCNGC | 5 cut(s) | 43, 437, 448, 467, 519 |
| Bme1390I | CCNGG | 1 cut(s) | 284 |
| Bme18I | GGWCC | 3 cut(s) | 19, 251, 1154 |
| BmeT110I | CYCGRG | 2 cut(s) | 623, 815 |
| BmgBI | CACGTC | 1 cut(s) | 658 |
| BmgT120I | GGNCC | 3 cut(s) | 19, 251, 1154 |
| BmiI | GGNNCC | 6 cut(s) | 253, 346, 764, 994, 1060, 1208 |
| BmrFI | CCNGG | 1 cut(s) | 284 |
| BmrI | ACTGGG | 1 cut(s) | 905 |
| BmsI | GCATC | 6 cut(s) | 447, 458, 477, 487, 517, 975 |
| BmuI | ACTGGG | 1 cut(s) | 905 |
| BpiI | GAAGAC | 2 cut(s) | 795, 899 |
| BpmI | CTGGAG | 1 cut(s) | 187 |
| BsaBI | GATNNNNATC | 1 cut(s) | 884 |
| BsaHI | GRCGYC | 1 cut(s) | 114 |
| BsaJI | CCNNGG | 4 cut(s) | 127, 283, 1098, 1210 |
| BsaWI | WCCGGW | 2 cut(s) | 1072, 1252 |
| Bsc4I | CCNNNNNNNGG | 3 cut(s) | 572, 652, 784 |
| Bse118I | RCCGGY | 1 cut(s) | 16 |
| Bse1I | ACTGG | 2 cut(s) | 204, 911 |
| Bse8I | GATNNNNATC | 1 cut(s) | 884 |
| BseAI | TCCGGA | 1 cut(s) | 1072 |
| BseBI | CCWGG | 1 cut(s) | 284 |
| BseDI | CCNNGG | 4 cut(s) | 127, 283, 1098, 1210 |
| BseGI | GGATG | 8 cut(s) | 427, 438, 449, 468, 478, 497, 508, 594 |
| BseJI | GATNNNNATC | 1 cut(s) | 884 |
| BseLI | CCNNNNNNNGG | 3 cut(s) | 572, 652, 784 |
| BseMII | CTCAG | 1 cut(s) | 389 |
| BseNI | ACTGG | 2 cut(s) | 204, 911 |
| BseRI | GAGGAG | 1 cut(s) | 657 |
| BseXI | GCAGC | 3 cut(s) | 28, 458, 529 |
| BsgI | GTGCAG | 1 cut(s) | 522 |
| BshFI | GGCC | 3 cut(s) | 460, 562, 1244 |
| BshNI | GGYRCC | 2 cut(s) | 344, 992 |
| BsiHKCI | CYCGRG | 2 cut(s) | 623, 815 |
| BsiSI | CCGG | 4 cut(s) | 17, 573, 1073, 1253 |
| BslFI | GGGAC | 1 cut(s) | 668 |
| BslI | CCNNNNNNNGG | 3 cut(s) | 572, 652, 784 |
| BsmAI | GTCTC | 3 cut(s) | 329, 620, 919 |
| BsmFI | GGGAC | 1 cut(s) | 668 |
| BsnI | GGCC | 3 cut(s) | 460, 562, 1244 |
| BsoBI | CYCGRG | 2 cut(s) | 623, 815 |
| Bsp1286I | GDGCHC | 1 cut(s) | 765 |
| Bsp13I | TCCGGA | 1 cut(s) | 1072 |
| Bsp143I | GATC | 4 cut(s) | 10, 61, 276, 885 |
| BspACI | CCGC | 3 cut(s) | 435, 444, 465 |
| BspANI | GGCC | 3 cut(s) | 460, 562, 1244 |
| BspCNI | CTCAG | 1 cut(s) | 388 |
| BspEI | TCCGGA | 1 cut(s) | 1072 |
| BspHI | TCATGA | 2 cut(s) | 738, 979 |
| BspLI | GGNNCC | 6 cut(s) | 253, 346, 764, 994, 1060, 1208 |
| BspMAI | CTGCAG | 1 cut(s) | 519 |
| BspT107I | GGYRCC | 2 cut(s) | 344, 992 |
| BsrFI | RCCGGY | 1 cut(s) | 16 |
| BsrI | ACTGG | 2 cut(s) | 204, 911 |
| BssAI | RCCGGY | 1 cut(s) | 16 |
| BssECI | CCNNGG | 4 cut(s) | 127, 283, 1098, 1210 |
| BssMI | GATC | 4 cut(s) | 10, 61, 276, 885 |
| BssNAI | GTATAC | 1 cut(s) | 69 |
| BssNI | GRCGYC | 1 cut(s) | 114 |
| BssSI | CACGAG | 1 cut(s) | 491 |
| BssT1I | CCWWGG | 1 cut(s) | 1098 |
| Bst1107I | GTATAC | 1 cut(s) | 69 |
| Bst2BI | CACGAG | 1 cut(s) | 491 |
| Bst2UI | CCWGG | 1 cut(s) | 284 |
| Bst4CI | ACNGT | 4 cut(s) | 50, 76, 86, 1211 |
| Bst6I | CTCTTC | 1 cut(s) | 355 |
| BstACI | GRCGYC | 1 cut(s) | 114 |
| BstAPI | GCANNNNNTGC | 1 cut(s) | 514 |
| BstC8I | GCNNGC | 2 cut(s) | 154, 262 |
| BstDEI | CTNAG | 4 cut(s) | 375, 859, 1125, 1275 |
| BstDSI | CCRYGG | 2 cut(s) | 127, 1210 |
| BstENI | CCTNNNNNAGG | 1 cut(s) | 782 |
| BstF5I | GGATG | 8 cut(s) | 427, 438, 449, 468, 478, 497, 508, 594 |
| BstHHI | GCGC | 1 cut(s) | 1094 |
| BstKTI | GATC | 4 cut(s) | 13, 64, 279, 888 |
| BstMAI | GTCTC | 3 cut(s) | 329, 620, 919 |
| BstMBI | GATC | 4 cut(s) | 10, 61, 276, 885 |
| BstMWI | GCNNNNNNNGC | 5 cut(s) | 245, 514, 689, 698, 719 |
| BstNI | CCWGG | 1 cut(s) | 284 |
| BstSCI | CCNGG | 1 cut(s) | 282 |
| BstSFI | CTRYAG | 1 cut(s) | 515 |
| BstV1I | GCAGC | 3 cut(s) | 28, 458, 529 |
| BstV2I | GAAGAC | 2 cut(s) | 795, 899 |
| BstX2I | RGATCY | 2 cut(s) | 10, 276 |
| BstYI | RGATCY | 2 cut(s) | 10, 276 |
| BstZ17I | GTATAC | 1 cut(s) | 69 |
| BsuI | GTATCC | 2 cut(s) | 179, 635 |
| BsuRI | GGCC | 3 cut(s) | 460, 562, 1244 |
| BtgI | CCRYGG | 2 cut(s) | 127, 1210 |
| BtrI | CACGTC | 1 cut(s) | 658 |
| BtsCI | GGATG | 8 cut(s) | 427, 438, 449, 468, 478, 497, 508, 594 |
| BtsIMutI | CAGTG | 1 cut(s) | 870 |
| Cac8I | GCNNGC | 2 cut(s) | 154, 262 |
| CciI | TCATGA | 2 cut(s) | 738, 979 |
| CfoI | GCGC | 1 cut(s) | 1094 |
| Cfr10I | RCCGGY | 1 cut(s) | 16 |
| Cfr13I | GGNCC | 3 cut(s) | 19, 251, 1154 |
| CseI | GACGC | 4 cut(s) | 122, 266, 972, 1116 |
| Csp6I | GTAC | 2 cut(s) | 775, 1200 |
| CspCI | CAANNNNNGTGG | 2 cut(s) | 539, 574 |
| CviAII | CATG | 5 cut(s) | 456, 739, 751, 980, 997 |
| CviQI | GTAC | 2 cut(s) | 775, 1200 |
| DdeI | CTNAG | 4 cut(s) | 375, 859, 1125, 1275 |
| DpnI | GATC | 4 cut(s) | 12, 63, 278, 887 |
| DpnII | GATC | 4 cut(s) | 10, 61, 276, 885 |
| DrdI | GACNNNNNNGTC | 2 cut(s) | 34, 1152 |
| DseDI | GACNNNNNNGTC | 2 cut(s) | 34, 1152 |
| EaeI | YGGCCR | 1 cut(s) | 560 |
| Eam1104I | CTCTTC | 1 cut(s) | 355 |
| EarI | CTCTTC | 1 cut(s) | 355 |
| Eco130I | CCWWGG | 1 cut(s) | 1098 |
| Eco24I | GRGCYC | 1 cut(s) | 765 |
| Eco47I | GGWCC | 3 cut(s) | 19, 251, 1154 |
| Eco88I | CYCGRG | 2 cut(s) | 623, 815 |
| EcoNI | CCTNNNNNAGG | 1 cut(s) | 782 |
| EcoRII | CCWGG | 1 cut(s) | 282 |
| EcoT14I | CCWWGG | 1 cut(s) | 1098 |
| EcoT38I | GRGCYC | 1 cut(s) | 765 |
| ErhI | CCWWGG | 1 cut(s) | 1098 |
| FaeI | CATG | 5 cut(s) | 459, 742, 754, 983, 1000 |
| FalI | AAGNNNNNCTT | 4 cut(s) | 596, 628, 601, 633 |
| FaqI | GGGAC | 1 cut(s) | 668 |
| FatI | CATG | 5 cut(s) | 455, 738, 750, 979, 996 |
| FauI | CCCGC | 1 cut(s) | 451 |
| FblI | GTMKAC | 3 cut(s) | 52, 68, 213 |
| Fnu4HI | GCNGC | 5 cut(s) | 42, 436, 447, 466, 518 |
| FokI | GGATG | 8 cut(s) | 414, 425, 436, 455, 465, 484, 495, 601 |
| FriOI | GRGCYC | 1 cut(s) | 765 |
| Fsp4HI | GCNGC | 5 cut(s) | 42, 436, 447, 466, 518 |
| FspBI | CTAG | 5 cut(s) | 320, 525, 546, 960, 1047 |
| GlaI | GCGC | 1 cut(s) | 1093 |
| GluI | GCNGC | 5 cut(s) | 42, 436, 447, 466, 518 |
| GsuI | CTGGAG | 1 cut(s) | 187 |
| HaeIII | GGCC | 3 cut(s) | 460, 562, 1244 |
| HapII | CCGG | 4 cut(s) | 17, 573, 1073, 1253 |
| HgaI | GACGC | 4 cut(s) | 122, 266, 972, 1116 |
| HhaI | GCGC | 1 cut(s) | 1094 |
| Hin1I | GRCGYC | 1 cut(s) | 114 |
| Hin1II | CATG | 5 cut(s) | 459, 742, 754, 983, 1000 |
| Hin6I | GCGC | 1 cut(s) | 1092 |
| HinP1I | GCGC | 1 cut(s) | 1092 |
| HincII | GTYRAC | 1 cut(s) | 53 |
| HindII | GTYRAC | 1 cut(s) | 53 |
| HindIII | AAGCTT | 1 cut(s) | 610 |
| HinfI | GANTC | 6 cut(s) | 35, 54, 337, 842, 895, 1076 |
| HpaII | CCGG | 4 cut(s) | 17, 573, 1073, 1253 |
| HphI | GGTGA | 1 cut(s) | 1273 |
| Hpy166II | GTNNAC | 4 cut(s) | 53, 69, 214, 1202 |
| Hpy188I | TCNGA | 5 cut(s) | 27, 109, 357, 378, 945 |
| Hpy188III | TCNNGA | 9 cut(s) | 485, 493, 625, 739, 854, 889, 980, 1047, 1073 |
| Hpy8I | GTNNAC | 4 cut(s) | 53, 69, 214, 1202 |
| Hpy99I | CGWCG | 5 cut(s) | 54, 76, 90, 116, 260 |
| HpyAV | CCTTC | 2 cut(s) | 916, 1172 |
| HpyCH4III | ACNGT | 4 cut(s) | 50, 76, 86, 1211 |
| HpyCH4IV | ACGT | 7 cut(s) | 142, 657, 823, 834, 1002, 1147, 1222 |
| HpyCH4V | TGCA | 6 cut(s) | 44, 137, 152, 181, 517, 539 |
| HpyF10VI | GCNNNNNNNGC | 5 cut(s) | 245, 514, 689, 698, 719 |
| HpyF3I | CTNAG | 4 cut(s) | 375, 859, 1125, 1275 |
| HpySE526I | ACGT | 7 cut(s) | 142, 657, 823, 834, 1002, 1147, 1222 |
| Hsp92I | GRCGYC | 1 cut(s) | 114 |
| Hsp92II | CATG | 5 cut(s) | 459, 742, 754, 983, 1000 |
| HspAI | GCGC | 1 cut(s) | 1092 |
| Kpn2I | TCCGGA | 1 cut(s) | 1072 |
| Kzo9I | GATC | 4 cut(s) | 10, 61, 276, 885 |
| LmnI | GCTCC | 3 cut(s) | 768, 1058, 1114 |
| Lsp1109I | GCAGC | 3 cut(s) | 28, 458, 529 |
| LweI | GCATC | 6 cut(s) | 447, 458, 477, 487, 517, 975 |
| MaeI | CTAG | 5 cut(s) | 320, 525, 546, 960, 1047 |
| MaeII | ACGT | 7 cut(s) | 142, 657, 823, 834, 1002, 1147, 1222 |
| MaeIII | GTNAC | 2 cut(s) | 493, 593 |
| MalI | GATC | 4 cut(s) | 12, 63, 278, 887 |
| MboI | GATC | 4 cut(s) | 10, 61, 276, 885 |
| MboII | GAAGA | 7 cut(s) | 319, 342, 422, 800, 904, 1045, 1240 |
| MflI | RGATCY | 2 cut(s) | 10, 276 |
| MhlI | GDGCHC | 1 cut(s) | 765 |
| MlsI | TGGCCA | 1 cut(s) | 562 |
| MluCI | AATT | 6 cut(s) | 365, 379, 389, 987, 1068, 1081 |
| MluNI | TGGCCA | 1 cut(s) | 562 |
| MlyI | GAGTC | 5 cut(s) | 44, 48, 331, 889, 1085 |
| Mox20I | TGGCCA | 1 cut(s) | 562 |
| MroI | TCCGGA | 1 cut(s) | 1072 |
| MscI | TGGCCA | 1 cut(s) | 562 |
| MseI | TTAA | 1 cut(s) | 608 |
| MslI | CAYNNNNRTG | 6 cut(s) | 132, 221, 454, 737, 753, 1028 |
| Msp20I | TGGCCA | 1 cut(s) | 562 |
| MspA1I | CMGCKG | 1 cut(s) | 41 |
| MspI | CCGG | 4 cut(s) | 17, 573, 1073, 1253 |
| MspR9I | CCNGG | 1 cut(s) | 284 |
| MvaI | CCWGG | 1 cut(s) | 284 |
| MwoI | GCNNNNNNNGC | 5 cut(s) | 245, 514, 689, 698, 719 |
| NdeII | GATC | 4 cut(s) | 10, 61, 276, 885 |
| NlaIII | CATG | 5 cut(s) | 459, 742, 754, 983, 1000 |
| NlaIV | GGNNCC | 6 cut(s) | 253, 346, 764, 994, 1060, 1208 |
| NmuCI | GTSAC | 1 cut(s) | 493 |
| PaeR7I | CTCGAG | 2 cut(s) | 623, 815 |
| PagI | TCATGA | 2 cut(s) | 738, 979 |
| PcsI | WCGNNNNNNNCGW | 2 cut(s) | 621, 1114 |
| PfeI | GAWTC | 1 cut(s) | 842 |
| PkrI | GCNGC | 5 cut(s) | 43, 437, 448, 467, 519 |
| PleI | GAGTC | 5 cut(s) | 43, 48, 331, 889, 1084 |
| PpsI | GAGTC | 5 cut(s) | 43, 48, 331, 889, 1084 |
| Psp1406I | AACGTT | 2 cut(s) | 142, 823 |
| Psp6I | CCWGG | 1 cut(s) | 282 |
| PspGI | CCWGG | 1 cut(s) | 282 |
| PspN4I | GGNNCC | 6 cut(s) | 253, 346, 764, 994, 1060, 1208 |
| PspPI | GGNCC | 3 cut(s) | 19, 251, 1154 |
| PspXI | VCTCGAGB | 1 cut(s) | 815 |
| PstI | CTGCAG | 1 cut(s) | 519 |
| PsuI | RGATCY | 2 cut(s) | 10, 276 |
| PvuII | CAGCTG | 1 cut(s) | 41 |
| RsaI | GTAC | 2 cut(s) | 776, 1201 |
| RsaNI | GTAC | 2 cut(s) | 775, 1200 |
| RseI | CAYNNNNRTG | 6 cut(s) | 132, 221, 454, 737, 753, 1028 |
| SalI | GTCGAC | 1 cut(s) | 51 |
| SaqAI | TTAA | 1 cut(s) | 608 |
| SatI | GCNGC | 5 cut(s) | 42, 436, 447, 466, 518 |
| Sau3AI | GATC | 4 cut(s) | 10, 61, 276, 885 |
| Sau96I | GGNCC | 3 cut(s) | 19, 251, 1154 |
| SchI | GAGTC | 5 cut(s) | 44, 48, 331, 889, 1085 |
| ScrFI | CCNGG | 1 cut(s) | 284 |
| SduI | GDGCHC | 1 cut(s) | 765 |
| SfaNI | GCATC | 6 cut(s) | 447, 458, 477, 487, 517, 975 |
| SfcI | CTRYAG | 1 cut(s) | 515 |
| Sfr274I | CTCGAG | 2 cut(s) | 623, 815 |
| SinI | GGWCC | 3 cut(s) | 19, 251, 1154 |
| SlaI | CTCGAG | 2 cut(s) | 623, 815 |
| SmiMI | CAYNNNNRTG | 6 cut(s) | 132, 221, 454, 737, 753, 1028 |
| SmlI | CTYRAG | 2 cut(s) | 623, 815 |
| SmoI | CTYRAG | 2 cut(s) | 623, 815 |
| Sse9I | AATT | 6 cut(s) | 365, 379, 389, 987, 1068, 1081 |
| SsiI | CCGC | 3 cut(s) | 435, 444, 465 |
| SspMI | CTAG | 5 cut(s) | 320, 525, 546, 960, 1047 |
| StyD4I | CCNGG | 1 cut(s) | 282 |
| StyI | CCWWGG | 1 cut(s) | 1098 |
| TaaI | ACNGT | 4 cut(s) | 50, 76, 86, 1211 |
| TaiI | ACGT | 7 cut(s) | 145, 660, 826, 837, 1005, 1150, 1225 |
| TaqI | TCGA | 6 cut(s) | 52, 119, 146, 624, 816, 888 |
| TasI | AATT | 6 cut(s) | 365, 379, 389, 987, 1068, 1081 |
| TauI | GCSGC | 2 cut(s) | 438, 468 |
| TfiI | GAWTC | 1 cut(s) | 842 |
| Tru1I | TTAA | 1 cut(s) | 608 |
| Tru9I | TTAA | 1 cut(s) | 608 |
| TscAI | CASTG | 1 cut(s) | 877 |
| TseFI | GTSAC | 1 cut(s) | 493 |
| TseI | GCWGC | 3 cut(s) | 41, 446, 517 |
| Tsp45I | GTSAC | 1 cut(s) | 493 |
| TspDTI | ATGAA | 8 cut(s) | 93, 306, 732, 767, 968, 1013, 1046, 1191 |
| TspGWI | ACGGA | 3 cut(s) | 144, 827, 1219 |
| TspRI | CASTG | 1 cut(s) | 877 |
| VpaK11BI | GGWCC | 3 cut(s) | 19, 251, 1154 |
| XagI | CCTNNNNNAGG | 1 cut(s) | 782 |
| XapI | RAATTY | 2 cut(s) | 365, 379 |
| XbaI | TCTAGA | 1 cut(s) | 1046 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 801 |
| XhoI | CTCGAG | 2 cut(s) | 623, 815 |
| XmiI | GTMKAC | 3 cut(s) | 52, 68, 213 |
| XspI | CTAG | 5 cut(s) | 320, 525, 546, 960, 1047 |