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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AciI | CCGC | 1 cut(s) | 79 |
| AclWI | GGATC | 1 cut(s) | 441 |
| AflIII | ACRYGT | 1 cut(s) | 135 |
| AgsI | TTSAA | 1 cut(s) | 407 |
| AjiI | CACGTC | 1 cut(s) | 136 |
| AjnI | CCWGG | 1 cut(s) | 129 |
| AluBI | AGCT | 4 cut(s) | 155, 161, 382, 392 |
| AluI | AGCT | 4 cut(s) | 155, 161, 382, 392 |
| Alw21I | GWGCWC | 1 cut(s) | 384 |
| Alw26I | GTCTC | 2 cut(s) | 297, 316 |
| AlwI | GGATC | 1 cut(s) | 441 |
| Ama87I | CYCGRG | 1 cut(s) | 119 |
| AoxI | GGCC | 1 cut(s) | 93 |
| ApeKI | GCWGC | 1 cut(s) | 179 |
| AvaI | CYCGRG | 1 cut(s) | 119 |
| BanII | GRGCYC | 1 cut(s) | 384 |
| Bbv12I | GWGCWC | 1 cut(s) | 384 |
| BbvI | GCAGC | 1 cut(s) | 191 |
| BccI | CCATC | 3 cut(s) | 92, 215, 316 |
| BciT130I | CCWGG | 1 cut(s) | 131 |
| BcoDI | GTCTC | 2 cut(s) | 297, 316 |
| BfaI | CTAG | 3 cut(s) | 51, 107, 126 |
| BglI | GCCNNNNNGGC | 1 cut(s) | 188 |
| BisI | GCNGC | 1 cut(s) | 180 |
| BlsI | GCNGC | 1 cut(s) | 181 |
| Bme1390I | CCNGG | 1 cut(s) | 131 |
| BmeT110I | CYCGRG | 1 cut(s) | 119 |
| BmgBI | CACGTC | 1 cut(s) | 136 |
| BmrFI | CCNGG | 1 cut(s) | 131 |
| BmsI | GCATC | 1 cut(s) | 94 |
| BpuEI | CTTGAG | 2 cut(s) | 74, 141 |
| BsaJI | CCNNGG | 1 cut(s) | 450 |
| BseBI | CCWGG | 1 cut(s) | 131 |
| BseDI | CCNNGG | 1 cut(s) | 450 |
| BseGI | GGATG | 2 cut(s) | 210, 420 |
| BseXI | GCAGC | 1 cut(s) | 191 |
| BshFI | GGCC | 1 cut(s) | 95 |
| BsiHKAI | GWGCWC | 1 cut(s) | 384 |
| BsiHKCI | CYCGRG | 1 cut(s) | 119 |
| BsmAI | GTCTC | 2 cut(s) | 297, 316 |
| BsnI | GGCC | 1 cut(s) | 95 |
| BsoBI | CYCGRG | 1 cut(s) | 119 |
| Bsp1286I | GDGCHC | 1 cut(s) | 384 |
| Bsp143I | GATC | 2 cut(s) | 264, 446 |
| BspACI | CCGC | 1 cut(s) | 79 |
| BspANI | GGCC | 1 cut(s) | 95 |
| BspHI | TCATGA | 1 cut(s) | 376 |
| BspPI | GGATC | 1 cut(s) | 441 |
| BssECI | CCNNGG | 1 cut(s) | 450 |
| BssMI | GATC | 2 cut(s) | 264, 446 |
| Bst2UI | CCWGG | 1 cut(s) | 131 |
| Bst4CI | ACNGT | 1 cut(s) | 145 |
| BstC8I | GCNNGC | 2 cut(s) | 83, 153 |
| BstDEI | CTNAG | 2 cut(s) | 184, 330 |
| BstDSI | CCRYGG | 1 cut(s) | 450 |
| BstF5I | GGATG | 2 cut(s) | 210, 420 |
| BstKTI | GATC | 2 cut(s) | 267, 449 |
| BstMAI | GTCTC | 2 cut(s) | 297, 316 |
| BstMBI | GATC | 2 cut(s) | 264, 446 |
| BstMWI | GCNNNNNNNGC | 4 cut(s) | 167, 176, 188, 197 |
| BstNI | CCWGG | 1 cut(s) | 131 |
| BstSCI | CCNGG | 1 cut(s) | 129 |
| BstV1I | GCAGC | 1 cut(s) | 191 |
| BstX2I | RGATCY | 1 cut(s) | 446 |
| BstYI | RGATCY | 1 cut(s) | 446 |
| BsuRI | GGCC | 1 cut(s) | 95 |
| BtgI | CCRYGG | 1 cut(s) | 450 |
| BtgZI | GCGATG | 1 cut(s) | 290 |
| BtrI | CACGTC | 1 cut(s) | 136 |
| BtsCI | GGATG | 2 cut(s) | 210, 420 |
| Cac8I | GCNNGC | 2 cut(s) | 83, 153 |
| CciI | TCATGA | 1 cut(s) | 376 |
| CviAII | CATG | 2 cut(s) | 377, 413 |
| DdeI | CTNAG | 2 cut(s) | 184, 330 |
| DpnI | GATC | 2 cut(s) | 266, 448 |
| DpnII | GATC | 2 cut(s) | 264, 446 |
| EciI | GGCGGA | 1 cut(s) | 68 |
| Ecl136II | GAGCTC | 1 cut(s) | 382 |
| Eco24I | GRGCYC | 1 cut(s) | 384 |
| Eco32I | GATATC | 1 cut(s) | 56 |
| Eco53kI | GAGCTC | 1 cut(s) | 382 |
| Eco88I | CYCGRG | 1 cut(s) | 119 |
| EcoICRI | GAGCTC | 1 cut(s) | 382 |
| EcoRII | CCWGG | 1 cut(s) | 129 |
| EcoRV | GATATC | 1 cut(s) | 56 |
| EcoT38I | GRGCYC | 1 cut(s) | 384 |
| FaeI | CATG | 2 cut(s) | 380, 416 |
| FaiI | YATR | 6 cut(s) | 253, 378, 395, 414, 438, 460 |
| FatI | CATG | 2 cut(s) | 376, 412 |
| Fnu4HI | GCNGC | 1 cut(s) | 180 |
| FokI | GGATG | 2 cut(s) | 197, 407 |
| FriOI | GRGCYC | 1 cut(s) | 384 |
| Fsp4HI | GCNGC | 1 cut(s) | 180 |
| FspBI | CTAG | 3 cut(s) | 51, 107, 126 |
| GluI | GCNGC | 1 cut(s) | 180 |
| HaeIII | GGCC | 1 cut(s) | 95 |
| Hin1II | CATG | 2 cut(s) | 380, 416 |
| HincII | GTYRAC | 1 cut(s) | 141 |
| HindII | GTYRAC | 1 cut(s) | 141 |
| HindIII | AAGCTT | 1 cut(s) | 159 |
| HinfI | GANTC | 3 cut(s) | 102, 115, 363 |
| HpaI | GTTAAC | 1 cut(s) | 141 |
| Hpy166II | GTNNAC | 1 cut(s) | 141 |
| Hpy188III | TCNNGA | 5 cut(s) | 51, 71, 119, 377, 444 |
| Hpy8I | GTNNAC | 1 cut(s) | 141 |
| HpyAV | CCTTC | 1 cut(s) | 313 |
| HpyCH4III | ACNGT | 1 cut(s) | 145 |
| HpyCH4IV | ACGT | 1 cut(s) | 135 |
| HpyCH4V | TGCA | 2 cut(s) | 317, 356 |
| HpyF10VI | GCNNNNNNNGC | 4 cut(s) | 167, 176, 188, 197 |
| HpyF3I | CTNAG | 2 cut(s) | 184, 330 |
| HpySE526I | ACGT | 1 cut(s) | 135 |
| Hsp92II | CATG | 2 cut(s) | 380, 416 |
| KspAI | GTTAAC | 1 cut(s) | 141 |
| Kzo9I | GATC | 2 cut(s) | 264, 446 |
| LmnI | GCTCC | 2 cut(s) | 34, 389 |
| LpnPI | CCDG | 6 cut(s) | 23, 46, 95, 116, 143, 321 |
| Lsp1109I | GCAGC | 1 cut(s) | 191 |
| LweI | GCATC | 1 cut(s) | 94 |
| MaeI | CTAG | 3 cut(s) | 51, 107, 126 |
| MaeII | ACGT | 1 cut(s) | 135 |
| MaeIII | GTNAC | 1 cut(s) | 5 |
| MalI | GATC | 2 cut(s) | 266, 448 |
| MboI | GATC | 2 cut(s) | 264, 446 |
| MboII | GAAGA | 1 cut(s) | 442 |
| MflI | RGATCY | 1 cut(s) | 446 |
| MhlI | GDGCHC | 1 cut(s) | 384 |
| MluCI | AATT | 4 cut(s) | 17, 248, 342, 439 |
| MnlI | CCTC | 1 cut(s) | 181 |
| MseI | TTAA | 3 cut(s) | 140, 234, 242 |
| MslI | CAYNNNNRTG | 2 cut(s) | 215, 425 |
| MspR9I | CCNGG | 1 cut(s) | 131 |
| MvaI | CCWGG | 1 cut(s) | 131 |
| MwoI | GCNNNNNNNGC | 4 cut(s) | 167, 176, 188, 197 |
| NdeII | GATC | 2 cut(s) | 264, 446 |
| NlaIII | CATG | 2 cut(s) | 380, 416 |
| PaeR7I | CTCGAG | 1 cut(s) | 119 |
| PagI | TCATGA | 1 cut(s) | 376 |
| PfeI | GAWTC | 3 cut(s) | 102, 115, 363 |
| PkrI | GCNGC | 1 cut(s) | 181 |
| Psp124BI | GAGCTC | 1 cut(s) | 384 |
| Psp6I | CCWGG | 1 cut(s) | 129 |
| PspGI | CCWGG | 1 cut(s) | 129 |
| PsuI | RGATCY | 1 cut(s) | 446 |
| RseI | CAYNNNNRTG | 2 cut(s) | 215, 425 |
| SacI | GAGCTC | 1 cut(s) | 384 |
| SaqAI | TTAA | 3 cut(s) | 140, 234, 242 |
| SatI | GCNGC | 1 cut(s) | 180 |
| Sau3AI | GATC | 2 cut(s) | 264, 446 |
| ScrFI | CCNGG | 1 cut(s) | 131 |
| SduI | GDGCHC | 1 cut(s) | 384 |
| SetI | ASST | 9 cut(s) | 12, 65, 138, 157, 163, 305, 374, 384, 394 |
| SfaNI | GCATC | 1 cut(s) | 94 |
| Sfr274I | CTCGAG | 1 cut(s) | 119 |
| SlaI | CTCGAG | 1 cut(s) | 119 |
| SmiMI | CAYNNNNRTG | 2 cut(s) | 215, 425 |
| SmlI | CTYRAG | 3 cut(s) | 89, 119, 156 |
| SmoI | CTYRAG | 3 cut(s) | 89, 119, 156 |
| Sse9I | AATT | 4 cut(s) | 17, 248, 342, 439 |
| SsiI | CCGC | 1 cut(s) | 79 |
| SspMI | CTAG | 3 cut(s) | 51, 107, 126 |
| SstI | GAGCTC | 1 cut(s) | 384 |
| StyD4I | CCNGG | 1 cut(s) | 129 |
| TaaI | ACNGT | 1 cut(s) | 145 |
| TaiI | ACGT | 1 cut(s) | 138 |
| TaqI | TCGA | 3 cut(s) | 120, 340, 443 |
| TasI | AATT | 4 cut(s) | 17, 248, 342, 439 |
| TfiI | GAWTC | 3 cut(s) | 102, 115, 363 |
| Tru1I | TTAA | 3 cut(s) | 140, 234, 242 |
| Tru9I | TTAA | 3 cut(s) | 140, 234, 242 |
| TseI | GCWGC | 1 cut(s) | 179 |
| TspDTI | ATGAA | 2 cut(s) | 365, 410 |
| TspGWI | ACGGA | 1 cut(s) | 439 |
| XbaI | TCTAGA | 1 cut(s) | 50 |
| XhoI | CTCGAG | 1 cut(s) | 119 |
| XspI | CTAG | 3 cut(s) | 51, 107, 126 |