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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AanI | TTATAA | 2 cut(s) | 198, 243 |
| AasI | GACNNNNNNGTC | 1 cut(s) | 309 |
| AccB1I | GGYRCC | 1 cut(s) | 371 |
| AccI | GTMKAC | 1 cut(s) | 16 |
| AclWI | GGATC | 1 cut(s) | 131 |
| AcsI | RAATTY | 1 cut(s) | 617 |
| AcyI | GRCGYC | 2 cut(s) | 372, 391 |
| AfaI | GTAC | 1 cut(s) | 611 |
| AfiI | CCNNNNNNNGG | 5 cut(s) | 260, 261, 331, 385, 386 |
| AflIII | ACRYGT | 1 cut(s) | 444 |
| AgsI | TTSAA | 3 cut(s) | 230, 481, 616 |
| AhlI | ACTAGT | 1 cut(s) | 505 |
| AjiI | CACGTC | 1 cut(s) | 445 |
| AleI | CACNNNNGTG | 1 cut(s) | 399 |
| AluBI | AGCT | 3 cut(s) | 40, 142, 164 |
| AluI | AGCT | 3 cut(s) | 40, 142, 164 |
| Alw26I | GTCTC | 2 cut(s) | 76, 525 |
| AlwI | GGATC | 1 cut(s) | 131 |
| AoxI | GGCC | 2 cut(s) | 206, 358 |
| ApeKI | GCWGC | 2 cut(s) | 350, 644 |
| ApoI | RAATTY | 1 cut(s) | 617 |
| AseI | ATTAAT | 1 cut(s) | 147 |
| AspA2I | CCTAGG | 1 cut(s) | 383 |
| AspLEI | GCGC | 2 cut(s) | 267, 374 |
| AspS9I | GGNCC | 2 cut(s) | 207, 311 |
| AsuHPI | GGTGA | 3 cut(s) | 199, 590, 592 |
| AvaII | GGWCC | 1 cut(s) | 311 |
| AvrII | CCTAGG | 1 cut(s) | 383 |
| BanI | GGYRCC | 1 cut(s) | 371 |
| BauI | CACGAG | 1 cut(s) | 127 |
| BbvI | GCAGC | 2 cut(s) | 362, 631 |
| BccI | CCATC | 2 cut(s) | 218, 569 |
| BcoDI | GTCTC | 2 cut(s) | 76, 525 |
| BcuI | ACTAGT | 1 cut(s) | 505 |
| BfaI | CTAG | 2 cut(s) | 384, 506 |
| BfmI | CTRYAG | 2 cut(s) | 13, 645 |
| BfoI | RGCGCY | 1 cut(s) | 375 |
| BisI | GCNGC | 2 cut(s) | 351, 645 |
| BlnI | CCTAGG | 1 cut(s) | 383 |
| BlsI | GCNGC | 2 cut(s) | 352, 646 |
| BmcAI | AGTACT | 1 cut(s) | 611 |
| Bme18I | GGWCC | 1 cut(s) | 311 |
| BmgBI | CACGTC | 1 cut(s) | 445 |
| BmgT120I | GGNCC | 2 cut(s) | 207, 311 |
| BmiI | GGNNCC | 1 cut(s) | 373 |
| BmsI | GCATC | 3 cut(s) | 95, 574, 631 |
| BoxI | GACNNNNGTC | 1 cut(s) | 447 |
| Bsa29I | ATCGAT | 1 cut(s) | 454 |
| BsaHI | GRCGYC | 2 cut(s) | 372, 391 |
| BsaJI | CCNNGG | 3 cut(s) | 355, 361, 383 |
| Bsc4I | CCNNNNNNNGG | 5 cut(s) | 260, 261, 331, 385, 386 |
| Bse1I | ACTGG | 1 cut(s) | 121 |
| Bse3DI | GCAATG | 2 cut(s) | 491, 496 |
| BseCI | ATCGAT | 1 cut(s) | 454 |
| BseDI | CCNNGG | 3 cut(s) | 355, 361, 383 |
| BseGI | GGATG | 1 cut(s) | 646 |
| BseLI | CCNNNNNNNGG | 5 cut(s) | 260, 261, 331, 385, 386 |
| BseMI | GCAATG | 2 cut(s) | 491, 496 |
| BseMII | CTCAG | 1 cut(s) | 87 |
| BseNI | ACTGG | 1 cut(s) | 121 |
| BseRI | GAGGAG | 1 cut(s) | 273 |
| BseXI | GCAGC | 2 cut(s) | 362, 631 |
| BshFI | GGCC | 2 cut(s) | 208, 360 |
| BshNI | GGYRCC | 1 cut(s) | 371 |
| BshVI | ATCGAT | 1 cut(s) | 454 |
| BslFI | GGGAC | 2 cut(s) | 306, 402 |
| BslI | CCNNNNNNNGG | 5 cut(s) | 260, 261, 331, 385, 386 |
| BsmAI | GTCTC | 2 cut(s) | 76, 525 |
| BsmFI | GGGAC | 2 cut(s) | 306, 402 |
| BsnI | GGCC | 2 cut(s) | 208, 360 |
| Bsp143I | GATC | 1 cut(s) | 123 |
| BspANI | GGCC | 2 cut(s) | 208, 360 |
| BspCNI | CTCAG | 1 cut(s) | 86 |
| BspDI | ATCGAT | 1 cut(s) | 454 |
| BspLI | GGNNCC | 1 cut(s) | 373 |
| BspMAI | CTGCAG | 1 cut(s) | 649 |
| BspPI | GGATC | 1 cut(s) | 131 |
| BspT107I | GGYRCC | 1 cut(s) | 371 |
| BsrDI | GCAATG | 2 cut(s) | 491, 496 |
| BsrI | ACTGG | 1 cut(s) | 121 |
| BssECI | CCNNGG | 3 cut(s) | 355, 361, 383 |
| BssMI | GATC | 1 cut(s) | 123 |
| BssNI | GRCGYC | 2 cut(s) | 372, 391 |
| BssSI | CACGAG | 1 cut(s) | 127 |
| BssT1I | CCWWGG | 3 cut(s) | 355, 361, 383 |
| Bst2BI | CACGAG | 1 cut(s) | 127 |
| BstACI | GRCGYC | 2 cut(s) | 372, 391 |
| BstAPI | GCANNNNNTGC | 1 cut(s) | 410 |
| BstC8I | GCNNGC | 1 cut(s) | 496 |
| BstDEI | CTNAG | 2 cut(s) | 73, 219 |
| BstF5I | GGATG | 1 cut(s) | 646 |
| BstH2I | RGCGCY | 1 cut(s) | 375 |
| BstHHI | GCGC | 2 cut(s) | 267, 374 |
| BstKTI | GATC | 1 cut(s) | 126 |
| BstMAI | GTCTC | 2 cut(s) | 76, 525 |
| BstMBI | GATC | 1 cut(s) | 123 |
| BstMWI | GCNNNNNNNGC | 5 cut(s) | 83, 271, 410, 495, 557 |
| BstPAI | GACNNNNGTC | 1 cut(s) | 447 |
| BstSFI | CTRYAG | 2 cut(s) | 13, 645 |
| BstV1I | GCAGC | 2 cut(s) | 362, 631 |
| BstXI | CCANNNNNNTGG | 1 cut(s) | 362 |
| Bsu15I | ATCGAT | 1 cut(s) | 454 |
| BsuRI | GGCC | 2 cut(s) | 208, 360 |
| BsuTUI | ATCGAT | 1 cut(s) | 454 |
| BtrI | CACGTC | 1 cut(s) | 445 |
| BtsCI | GGATG | 1 cut(s) | 646 |
| Cac8I | GCNNGC | 1 cut(s) | 496 |
| CfoI | GCGC | 2 cut(s) | 267, 374 |
| Cfr13I | GGNCC | 2 cut(s) | 207, 311 |
| ClaI | ATCGAT | 1 cut(s) | 454 |
| CseI | GACGC | 1 cut(s) | 399 |
| Csp6I | GTAC | 1 cut(s) | 610 |
| CviAII | CATG | 3 cut(s) | 173, 341, 545 |
| CviJI | RGCY | 7 cut(s) | 40, 142, 164, 208, 353, 360, 551 |
| CviKI_1 | RGCY | 7 cut(s) | 40, 142, 164, 208, 353, 360, 551 |
| CviQI | GTAC | 1 cut(s) | 610 |
| DdeI | CTNAG | 2 cut(s) | 73, 219 |
| DinI | GGCGCC | 1 cut(s) | 373 |
| DpnI | GATC | 1 cut(s) | 125 |
| DpnII | GATC | 1 cut(s) | 123 |
| DrdI | GACNNNNNNGTC | 1 cut(s) | 309 |
| DseDI | GACNNNNNNGTC | 1 cut(s) | 309 |
| Eco130I | CCWWGG | 3 cut(s) | 355, 361, 383 |
| Eco147I | AGGCCT | 1 cut(s) | 360 |
| Eco47I | GGWCC | 1 cut(s) | 311 |
| EcoT14I | CCWWGG | 3 cut(s) | 355, 361, 383 |
| EgeI | GGCGCC | 1 cut(s) | 373 |
| EheI | GGCGCC | 1 cut(s) | 373 |
| ErhI | CCWWGG | 3 cut(s) | 355, 361, 383 |
| FaeI | CATG | 3 cut(s) | 176, 344, 548 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 540, 572 |
| FaqI | GGGAC | 2 cut(s) | 306, 402 |
| FatI | CATG | 3 cut(s) | 172, 340, 544 |
| FblI | GTMKAC | 1 cut(s) | 16 |
| Fnu4HI | GCNGC | 2 cut(s) | 351, 645 |
| FokI | GGATG | 1 cut(s) | 653 |
| Fsp4HI | GCNGC | 2 cut(s) | 351, 645 |
| FspBI | CTAG | 2 cut(s) | 384, 506 |
| GlaI | GCGC | 2 cut(s) | 266, 373 |
| GluI | GCNGC | 2 cut(s) | 351, 645 |
| HaeII | RGCGCY | 1 cut(s) | 375 |
| HaeIII | GGCC | 2 cut(s) | 208, 360 |
| HgaI | GACGC | 1 cut(s) | 399 |
| HhaI | GCGC | 2 cut(s) | 267, 374 |
| Hin1I | GRCGYC | 2 cut(s) | 372, 391 |
| Hin1II | CATG | 3 cut(s) | 176, 344, 548 |
| Hin6I | GCGC | 2 cut(s) | 265, 372 |
| HinP1I | GCGC | 2 cut(s) | 265, 372 |
| HphI | GGTGA | 3 cut(s) | 199, 590, 592 |
| Hpy166II | GTNNAC | 1 cut(s) | 17 |
| Hpy188I | TCNGA | 1 cut(s) | 215 |
| Hpy188III | TCNNGA | 2 cut(s) | 127, 230 |
| Hpy8I | GTNNAC | 1 cut(s) | 17 |
| HpyAV | CCTTC | 2 cut(s) | 73, 329 |
| HpyCH4IV | ACGT | 3 cut(s) | 304, 444, 514 |
| HpyCH4V | TGCA | 8 cut(s) | 251, 404, 413, 489, 494, 512, 634, 647 |
| HpyF10VI | GCNNNNNNNGC | 5 cut(s) | 83, 271, 410, 495, 557 |
| HpyF3I | CTNAG | 2 cut(s) | 73, 219 |
| HpySE526I | ACGT | 3 cut(s) | 304, 444, 514 |
| Hsp92I | GRCGYC | 2 cut(s) | 372, 391 |
| Hsp92II | CATG | 3 cut(s) | 176, 344, 548 |
| HspAI | GCGC | 2 cut(s) | 265, 372 |
| KasI | GGCGCC | 1 cut(s) | 371 |
| Kzo9I | GATC | 1 cut(s) | 123 |
| LmnI | GCTCC | 3 cut(s) | 31, 271, 347 |
| LpnPI | CCDG | 2 cut(s) | 102, 268 |
| Lsp1109I | GCAGC | 2 cut(s) | 362, 631 |
| LweI | GCATC | 3 cut(s) | 95, 574, 631 |
| MaeI | CTAG | 2 cut(s) | 384, 506 |
| MaeII | ACGT | 3 cut(s) | 304, 444, 514 |
| MaeIII | GTNAC | 1 cut(s) | 515 |
| MalI | GATC | 1 cut(s) | 125 |
| MboI | GATC | 1 cut(s) | 123 |
| MboII | GAAGA | 5 cut(s) | 202, 575, 578, 581, 584 |
| MluCI | AATT | 9 cut(s) | 42, 78, 144, 193, 199, 238, 419, 617, 629 |
| Mly113I | GGCGCC | 1 cut(s) | 372 |
| MnlI | CCTC | 6 cut(s) | 123, 226, 251, 254, 390, 422 |
| MseI | TTAA | 4 cut(s) | 147, 203, 422, 464 |
| MslI | CAYNNNNRTG | 3 cut(s) | 399, 456, 639 |
| MwoI | GCNNNNNNNGC | 5 cut(s) | 83, 271, 410, 495, 557 |
| NarI | GGCGCC | 1 cut(s) | 372 |
| NdeII | GATC | 1 cut(s) | 123 |
| NlaIII | CATG | 3 cut(s) | 176, 344, 548 |
| NlaIV | GGNNCC | 1 cut(s) | 373 |
| OliI | CACNNNNGTG | 1 cut(s) | 399 |
| PceI | AGGCCT | 1 cut(s) | 360 |
| PkrI | GCNGC | 2 cut(s) | 352, 646 |
| PluTI | GGCGCC | 1 cut(s) | 375 |
| PshAI | GACNNNNGTC | 1 cut(s) | 447 |
| PshBI | ATTAAT | 1 cut(s) | 147 |
| PsiI | TTATAA | 2 cut(s) | 198, 243 |
| PspN4I | GGNNCC | 1 cut(s) | 373 |
| PspPI | GGNCC | 2 cut(s) | 207, 311 |
| PstI | CTGCAG | 1 cut(s) | 649 |
| RsaI | GTAC | 1 cut(s) | 611 |
| RsaNI | GTAC | 1 cut(s) | 610 |
| RseI | CAYNNNNRTG | 3 cut(s) | 399, 456, 639 |
| SaqAI | TTAA | 4 cut(s) | 147, 203, 422, 464 |
| SatI | GCNGC | 2 cut(s) | 351, 645 |
| Sau3AI | GATC | 1 cut(s) | 123 |
| Sau96I | GGNCC | 2 cut(s) | 207, 311 |
| ScaI | AGTACT | 1 cut(s) | 611 |
| SfaNI | GCATC | 3 cut(s) | 95, 574, 631 |
| SfcI | CTRYAG | 2 cut(s) | 13, 645 |
| SfoI | GGCGCC | 1 cut(s) | 373 |
| SinI | GGWCC | 1 cut(s) | 311 |
| SmiMI | CAYNNNNRTG | 3 cut(s) | 399, 456, 639 |
| SpeI | ACTAGT | 1 cut(s) | 505 |
| Sse9I | AATT | 9 cut(s) | 42, 78, 144, 193, 199, 238, 419, 617, 629 |
| SseBI | AGGCCT | 1 cut(s) | 360 |
| SspDI | GGCGCC | 1 cut(s) | 371 |
| SspMI | CTAG | 2 cut(s) | 384, 506 |
| StuI | AGGCCT | 1 cut(s) | 360 |
| StyI | CCWWGG | 3 cut(s) | 355, 361, 383 |
| TaiI | ACGT | 3 cut(s) | 307, 447, 517 |
| TaqI | TCGA | 2 cut(s) | 100, 454 |
| TasI | AATT | 9 cut(s) | 42, 78, 144, 193, 199, 238, 419, 617, 629 |
| TatI | WGTACW | 1 cut(s) | 609 |
| Tru1I | TTAA | 4 cut(s) | 147, 203, 422, 464 |
| Tru9I | TTAA | 4 cut(s) | 147, 203, 422, 464 |
| TseI | GCWGC | 2 cut(s) | 350, 644 |
| TspDTI | ATGAA | 2 cut(s) | 125, 561 |
| TspGWI | ACGGA | 2 cut(s) | 136, 315 |
| VpaK11BI | GGWCC | 1 cut(s) | 311 |
| VspI | ATTAAT | 1 cut(s) | 147 |
| XapI | RAATTY | 1 cut(s) | 617 |
| XmaJI | CCTAGG | 1 cut(s) | 383 |
| XmiI | GTMKAC | 1 cut(s) | 16 |
| XspI | CTAG | 2 cut(s) | 384, 506 |
| ZrmI | AGTACT | 1 cut(s) | 611 |