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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccB1I | GGYRCC | 1 cut(s) | 228 |
| AccII | CGCG | 1 cut(s) | 213 |
| AccIII | TCCGGA | 1 cut(s) | 193 |
| AciI | CCGC | 3 cut(s) | 39, 307, 528 |
| AclWI | GGATC | 2 cut(s) | 95, 165 |
| AcoI | YGGCCR | 1 cut(s) | 373 |
| AcyI | GRCGYC | 1 cut(s) | 229 |
| AfiI | CCNNNNNNNGG | 1 cut(s) | 489 |
| AgsI | TTSAA | 1 cut(s) | 424 |
| AluBI | AGCT | 3 cut(s) | 106, 116, 509 |
| AluI | AGCT | 3 cut(s) | 106, 116, 509 |
| Alw21I | GWGCWC | 2 cut(s) | 108, 511 |
| Alw26I | GTCTC | 1 cut(s) | 40 |
| AlwI | GGATC | 2 cut(s) | 95, 165 |
| Aor13HI | TCCGGA | 1 cut(s) | 193 |
| AoxI | GGCC | 1 cut(s) | 373 |
| ApeKI | GCWGC | 1 cut(s) | 77 |
| AspLEI | GCGC | 3 cut(s) | 215, 231, 430 |
| AspS9I | GGNCC | 1 cut(s) | 275 |
| AsuHPI | GGTGA | 2 cut(s) | 16, 517 |
| AvaII | GGWCC | 1 cut(s) | 275 |
| AxyI | CCTNAGG | 1 cut(s) | 251 |
| BaeGI | GKGCMC | 1 cut(s) | 496 |
| BalI | TGGCCA | 1 cut(s) | 375 |
| BanI | GGYRCC | 1 cut(s) | 228 |
| BanII | GRGCYC | 2 cut(s) | 108, 511 |
| BauI | CACGAG | 1 cut(s) | 510 |
| BbsI | GAAGAC | 1 cut(s) | 20 |
| Bbv12I | GWGCWC | 2 cut(s) | 108, 511 |
| BbvI | GCAGC | 1 cut(s) | 64 |
| BccI | CCATC | 2 cut(s) | 40, 414 |
| BcgI | CGANNNNNNTGC | 2 cut(s) | 59, 93 |
| BciVI | GTATCC | 1 cut(s) | 250 |
| BcoDI | GTCTC | 1 cut(s) | 40 |
| BfmI | CTRYAG | 1 cut(s) | 78 |
| BfoI | RGCGCY | 2 cut(s) | 232, 431 |
| BfuI | GTATCC | 1 cut(s) | 250 |
| BisI | GCNGC | 1 cut(s) | 78 |
| BlsI | GCNGC | 1 cut(s) | 79 |
| Bme18I | GGWCC | 1 cut(s) | 275 |
| BmgT120I | GGNCC | 1 cut(s) | 275 |
| BmiI | GGNNCC | 3 cut(s) | 230, 329, 388 |
| BmsI | GCATC | 1 cut(s) | 488 |
| BpiI | GAAGAC | 1 cut(s) | 20 |
| Bsa29I | ATCGAT | 1 cut(s) | 69 |
| BsaHI | GRCGYC | 1 cut(s) | 229 |
| BsaWI | WCCGGW | 2 cut(s) | 193, 482 |
| Bsc4I | CCNNNNNNNGG | 1 cut(s) | 489 |
| Bse21I | CCTNAGG | 1 cut(s) | 251 |
| Bse3DI | GCAATG | 1 cut(s) | 370 |
| BseAI | TCCGGA | 1 cut(s) | 193 |
| BseCI | ATCGAT | 1 cut(s) | 69 |
| BseGI | GGATG | 3 cut(s) | 144, 406, 479 |
| BseLI | CCNNNNNNNGG | 1 cut(s) | 489 |
| BseMI | GCAATG | 1 cut(s) | 370 |
| BseSI | GKGCMC | 1 cut(s) | 496 |
| BseXI | GCAGC | 1 cut(s) | 64 |
| Bsh1236I | CGCG | 1 cut(s) | 213 |
| BshFI | GGCC | 1 cut(s) | 375 |
| BshNI | GGYRCC | 1 cut(s) | 228 |
| BshVI | ATCGAT | 1 cut(s) | 69 |
| BsiHKAI | GWGCWC | 2 cut(s) | 108, 511 |
| BsiSI | CCGG | 2 cut(s) | 194, 483 |
| BslI | CCNNNNNNNGG | 1 cut(s) | 489 |
| BsmAI | GTCTC | 1 cut(s) | 40 |
| BsmBI | CGTCTC | 1 cut(s) | 40 |
| BsnI | GGCC | 1 cut(s) | 375 |
| Bsp1286I | GDGCHC | 3 cut(s) | 108, 496, 511 |
| Bsp13I | TCCGGA | 1 cut(s) | 193 |
| Bsp143I | GATC | 3 cut(s) | 6, 87, 170 |
| BspACI | CCGC | 3 cut(s) | 39, 307, 528 |
| BspANI | GGCC | 1 cut(s) | 375 |
| BspDI | ATCGAT | 1 cut(s) | 69 |
| BspEI | TCCGGA | 1 cut(s) | 193 |
| BspFNI | CGCG | 1 cut(s) | 213 |
| BspHI | TCATGA | 1 cut(s) | 100 |
| BspLI | GGNNCC | 3 cut(s) | 230, 329, 388 |
| BspMAI | CTGCAG | 1 cut(s) | 82 |
| BspPI | GGATC | 2 cut(s) | 95, 165 |
| BspT107I | GGYRCC | 1 cut(s) | 228 |
| BsrDI | GCAATG | 1 cut(s) | 370 |
| BssMI | GATC | 3 cut(s) | 6, 87, 170 |
| BssNI | GRCGYC | 1 cut(s) | 229 |
| BssSI | CACGAG | 1 cut(s) | 510 |
| Bst2BI | CACGAG | 1 cut(s) | 510 |
| Bst6I | CTCTTC | 1 cut(s) | 328 |
| BstACI | GRCGYC | 1 cut(s) | 229 |
| BstDEI | CTNAG | 4 cut(s) | 54, 219, 251, 399 |
| BstEII | GGTNACC | 1 cut(s) | 302 |
| BstF5I | GGATG | 3 cut(s) | 144, 406, 479 |
| BstFNI | CGCG | 1 cut(s) | 213 |
| BstH2I | RGCGCY | 2 cut(s) | 232, 431 |
| BstHHI | GCGC | 3 cut(s) | 215, 231, 430 |
| BstKTI | GATC | 3 cut(s) | 9, 90, 173 |
| BstMAI | GTCTC | 1 cut(s) | 40 |
| BstMBI | GATC | 3 cut(s) | 6, 87, 170 |
| BstMWI | GCNNNNNNNGC | 2 cut(s) | 235, 425 |
| BstPI | GGTNACC | 1 cut(s) | 302 |
| BstSFI | CTRYAG | 1 cut(s) | 78 |
| BstSLI | GKGCMC | 1 cut(s) | 496 |
| BstUI | CGCG | 1 cut(s) | 213 |
| BstV1I | GCAGC | 1 cut(s) | 64 |
| BstV2I | GAAGAC | 1 cut(s) | 20 |
| BstX2I | RGATCY | 1 cut(s) | 170 |
| BstXI | CCANNNNNNTGG | 1 cut(s) | 383 |
| BstYI | RGATCY | 1 cut(s) | 170 |
| Bsu15I | ATCGAT | 1 cut(s) | 69 |
| Bsu36I | CCTNAGG | 1 cut(s) | 251 |
| BsuI | GTATCC | 1 cut(s) | 250 |
| BsuRI | GGCC | 1 cut(s) | 375 |
| BsuTUI | ATCGAT | 1 cut(s) | 69 |
| BtsCI | GGATG | 3 cut(s) | 144, 406, 479 |
| CciI | TCATGA | 1 cut(s) | 100 |
| CfoI | GCGC | 3 cut(s) | 215, 231, 430 |
| Cfr13I | GGNCC | 1 cut(s) | 275 |
| ClaI | ATCGAT | 1 cut(s) | 69 |
| CseI | GACGC | 1 cut(s) | 425 |
| CviAII | CATG | 3 cut(s) | 101, 137, 377 |
| CviJI | RGCY | 6 cut(s) | 106, 116, 375, 387, 405, 509 |
| CviKI_1 | RGCY | 6 cut(s) | 106, 116, 375, 387, 405, 509 |
| DdeI | CTNAG | 4 cut(s) | 54, 219, 251, 399 |
| DinI | GGCGCC | 1 cut(s) | 230 |
| DpnI | GATC | 3 cut(s) | 8, 89, 172 |
| DpnII | GATC | 3 cut(s) | 6, 87, 170 |
| EaeI | YGGCCR | 1 cut(s) | 373 |
| Eam1104I | CTCTTC | 1 cut(s) | 328 |
| EarI | CTCTTC | 1 cut(s) | 328 |
| Ecl136II | GAGCTC | 2 cut(s) | 106, 509 |
| Eco24I | GRGCYC | 2 cut(s) | 108, 511 |
| Eco47I | GGWCC | 1 cut(s) | 275 |
| Eco53kI | GAGCTC | 2 cut(s) | 106, 509 |
| Eco81I | CCTNAGG | 1 cut(s) | 251 |
| Eco91I | GGTNACC | 1 cut(s) | 302 |
| EcoICRI | GAGCTC | 2 cut(s) | 106, 509 |
| EcoO65I | GGTNACC | 1 cut(s) | 302 |
| EcoT38I | GRGCYC | 2 cut(s) | 108, 511 |
| EgeI | GGCGCC | 1 cut(s) | 230 |
| EheI | GGCGCC | 1 cut(s) | 230 |
| Esp3I | CGTCTC | 1 cut(s) | 40 |
| FaeI | CATG | 3 cut(s) | 104, 140, 380 |
| FatI | CATG | 3 cut(s) | 100, 136, 376 |
| Fnu4HI | GCNGC | 1 cut(s) | 78 |
| FokI | GGATG | 3 cut(s) | 131, 393, 466 |
| FriOI | GRGCYC | 2 cut(s) | 108, 511 |
| Fsp4HI | GCNGC | 1 cut(s) | 78 |
| GlaI | GCGC | 3 cut(s) | 214, 230, 429 |
| GluI | GCNGC | 1 cut(s) | 78 |
| HaeII | RGCGCY | 2 cut(s) | 232, 431 |
| HaeIII | GGCC | 1 cut(s) | 375 |
| HapII | CCGG | 2 cut(s) | 194, 483 |
| HgaI | GACGC | 1 cut(s) | 425 |
| HhaI | GCGC | 3 cut(s) | 215, 231, 430 |
| Hin1I | GRCGYC | 1 cut(s) | 229 |
| Hin1II | CATG | 3 cut(s) | 104, 140, 380 |
| Hin6I | GCGC | 3 cut(s) | 213, 229, 428 |
| HinP1I | GCGC | 3 cut(s) | 213, 229, 428 |
| HincII | GTYRAC | 1 cut(s) | 341 |
| HindII | GTYRAC | 1 cut(s) | 341 |
| HinfI | GANTC | 4 cut(s) | 16, 66, 197, 443 |
| HpaII | CCGG | 2 cut(s) | 194, 483 |
| HphI | GGTGA | 2 cut(s) | 16, 517 |
| Hpy166II | GTNNAC | 1 cut(s) | 341 |
| Hpy188I | TCNGA | 2 cut(s) | 265, 448 |
| Hpy188III | TCNNGA | 6 cut(s) | 10, 101, 168, 194, 468, 512 |
| Hpy8I | GTNNAC | 1 cut(s) | 341 |
| HpyAV | CCTTC | 2 cut(s) | 219, 293 |
| HpyCH4IV | ACGT | 1 cut(s) | 343 |
| HpyCH4V | TGCA | 2 cut(s) | 80, 540 |
| HpyF10VI | GCNNNNNNNGC | 2 cut(s) | 235, 425 |
| HpyF3I | CTNAG | 4 cut(s) | 54, 219, 251, 399 |
| HpySE526I | ACGT | 1 cut(s) | 343 |
| Hsp92I | GRCGYC | 1 cut(s) | 229 |
| Hsp92II | CATG | 3 cut(s) | 104, 140, 380 |
| HspAI | GCGC | 3 cut(s) | 213, 229, 428 |
| KasI | GGCGCC | 1 cut(s) | 228 |
| Kpn2I | TCCGGA | 1 cut(s) | 193 |
| Kzo9I | GATC | 3 cut(s) | 6, 87, 170 |
| LmnI | GCTCC | 3 cut(s) | 113, 392, 476 |
| LpnPI | CCDG | 4 cut(s) | 66, 207, 357, 496 |
| Lsp1109I | GCAGC | 1 cut(s) | 64 |
| LweI | GCATC | 1 cut(s) | 488 |
| MaeII | ACGT | 1 cut(s) | 343 |
| MaeIII | GTNAC | 2 cut(s) | 302, 523 |
| MalI | GATC | 3 cut(s) | 8, 89, 172 |
| MboI | GATC | 3 cut(s) | 6, 87, 170 |
| MboII | GAAGA | 4 cut(s) | 25, 166, 345, 527 |
| MflI | RGATCY | 1 cut(s) | 170 |
| MhlI | GDGCHC | 3 cut(s) | 108, 496, 511 |
| MlsI | TGGCCA | 1 cut(s) | 375 |
| MluCI | AATT | 3 cut(s) | 163, 202, 283 |
| MluNI | TGGCCA | 1 cut(s) | 375 |
| Mly113I | GGCGCC | 1 cut(s) | 229 |
| MlyI | GAGTC | 2 cut(s) | 10, 452 |
| MnlI | CCTC | 5 cut(s) | 329, 349, 353, 379, 441 |
| Mox20I | TGGCCA | 1 cut(s) | 375 |
| MroI | TCCGGA | 1 cut(s) | 193 |
| MscI | TGGCCA | 1 cut(s) | 375 |
| MslI | CAYNNNNRTG | 3 cut(s) | 149, 381, 411 |
| Msp20I | TGGCCA | 1 cut(s) | 375 |
| MspI | CCGG | 2 cut(s) | 194, 483 |
| MvnI | CGCG | 1 cut(s) | 213 |
| MwoI | GCNNNNNNNGC | 2 cut(s) | 235, 425 |
| NarI | GGCGCC | 1 cut(s) | 229 |
| NdeII | GATC | 3 cut(s) | 6, 87, 170 |
| NlaIII | CATG | 3 cut(s) | 104, 140, 380 |
| NlaIV | GGNNCC | 3 cut(s) | 230, 329, 388 |
| NmuCI | GTSAC | 1 cut(s) | 523 |
| PagI | TCATGA | 1 cut(s) | 100 |
| PfeI | GAWTC | 2 cut(s) | 66, 197 |
| PkrI | GCNGC | 1 cut(s) | 79 |
| PleI | GAGTC | 2 cut(s) | 10, 451 |
| PluTI | GGCGCC | 1 cut(s) | 232 |
| PpsI | GAGTC | 2 cut(s) | 10, 451 |
| Psp124BI | GAGCTC | 2 cut(s) | 108, 511 |
| PspEI | GGTNACC | 1 cut(s) | 302 |
| PspN4I | GGNNCC | 3 cut(s) | 230, 329, 388 |
| PspPI | GGNCC | 1 cut(s) | 275 |
| PstI | CTGCAG | 1 cut(s) | 82 |
| PsuI | RGATCY | 1 cut(s) | 170 |
| RseI | CAYNNNNRTG | 3 cut(s) | 149, 381, 411 |
| SacI | GAGCTC | 2 cut(s) | 108, 511 |
| SatI | GCNGC | 1 cut(s) | 78 |
| Sau3AI | GATC | 3 cut(s) | 6, 87, 170 |
| Sau96I | GGNCC | 1 cut(s) | 275 |
| SchI | GAGTC | 2 cut(s) | 10, 452 |
| SduI | GDGCHC | 3 cut(s) | 108, 496, 511 |
| SetI | ASST | 8 cut(s) | 98, 108, 118, 252, 304, 340, 346, 511 |
| SfaNI | GCATC | 1 cut(s) | 488 |
| SfcI | CTRYAG | 1 cut(s) | 78 |
| SfoI | GGCGCC | 1 cut(s) | 230 |
| SinI | GGWCC | 1 cut(s) | 275 |
| SmiMI | CAYNNNNRTG | 3 cut(s) | 149, 381, 411 |
| Sse9I | AATT | 3 cut(s) | 163, 202, 283 |
| SsiI | CCGC | 3 cut(s) | 39, 307, 528 |
| SspDI | GGCGCC | 1 cut(s) | 228 |
| SstI | GAGCTC | 2 cut(s) | 108, 511 |
| TaiI | ACGT | 1 cut(s) | 346 |
| TaqI | TCGA | 5 cut(s) | 9, 64, 69, 167, 469 |
| TaqII | GACCGA | 1 cut(s) | 263 |
| TasI | AATT | 3 cut(s) | 163, 202, 283 |
| TfiI | GAWTC | 2 cut(s) | 66, 197 |
| TseFI | GTSAC | 1 cut(s) | 523 |
| TseI | GCWGC | 1 cut(s) | 77 |
| Tsp45I | GTSAC | 1 cut(s) | 523 |
| TspDTI | ATGAA | 3 cut(s) | 89, 134, 167 |
| TspGWI | ACGGA | 3 cut(s) | 100, 163, 340 |
| VpaK11BI | GGWCC | 1 cut(s) | 275 |