ribonuclease H protein
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AciI | CCGC | 4 cut(s) | 185, 227, 1430, 1487 |
| AclWI | GGATC | 2 cut(s) | 413, 1339 |
| AcsI | RAATTY | 4 cut(s) | 55, 401, 921, 1080 |
| AfaI | GTAC | 2 cut(s) | 126, 1348 |
| AfiI | CCNNNNNNNGG | 4 cut(s) | 1287, 1328, 1373, 1543 |
| AgeI | ACCGGT | 1 cut(s) | 1343 |
| AgsI | TTSAA | 9 cut(s) | 22, 364, 458, 826, 872, 1181, 1237, 1645, 1667 |
| AjnI | CCWGG | 1 cut(s) | 517 |
| Alw26I | GTCTC | 1 cut(s) | 940 |
| AlwI | GGATC | 2 cut(s) | 413, 1339 |
| AlwNI | CAGNNNCTG | 2 cut(s) | 437, 1334 |
| AoxI | GGCC | 2 cut(s) | 1375, 1460 |
| ApeKI | GCWGC | 5 cut(s) | 224, 242, 779, 1424, 1427 |
| ApoI | RAATTY | 4 cut(s) | 55, 401, 921, 1080 |
| AsiGI | ACCGGT | 1 cut(s) | 1343 |
| Asp700I | GAANNNNTTC | 3 cut(s) | 477, 685, 1628 |
| AspS9I | GGNCC | 2 cut(s) | 521, 1141 |
| AsuC2I | CCSGG | 1 cut(s) | 932 |
| AsuHPI | GGTGA | 1 cut(s) | 182 |
| AvaII | GGWCC | 2 cut(s) | 521, 1141 |
| AxyI | CCTNAGG | 1 cut(s) | 1286 |
| BaeGI | GKGCMC | 1 cut(s) | 632 |
| BbsI | GAAGAC | 3 cut(s) | 381, 964, 1044 |
| BbvCI | CCTCAGC | 1 cut(s) | 74 |
| BbvI | GCAGC | 5 cut(s) | 229, 236, 791, 1411, 1414 |
| BccI | CCATC | 2 cut(s) | 521, 1391 |
| BciT130I | CCWGG | 1 cut(s) | 519 |
| BcnI | CCSGG | 1 cut(s) | 932 |
| BcoDI | GTCTC | 1 cut(s) | 940 |
| BfaI | CTAG | 5 cut(s) | 645, 890, 969, 1469, 1583 |
| BfmI | CTRYAG | 3 cut(s) | 102, 318, 1297 |
| BglII | AGATCT | 1 cut(s) | 98 |
| BisI | GCNGC | 6 cut(s) | 186, 225, 243, 780, 1425, 1428 |
| BlpI | GCTNAGC | 1 cut(s) | 789 |
| BlsI | GCNGC | 6 cut(s) | 187, 226, 244, 781, 1426, 1429 |
| Bme1390I | CCNGG | 2 cut(s) | 519, 932 |
| Bme18I | GGWCC | 2 cut(s) | 521, 1141 |
| BmgT120I | GGNCC | 2 cut(s) | 521, 1141 |
| BmiI | GGNNCC | 2 cut(s) | 1095, 1142 |
| BmrFI | CCNGG | 2 cut(s) | 519, 932 |
| BmsI | GCATC | 2 cut(s) | 298, 1346 |
| BpiI | GAAGAC | 3 cut(s) | 381, 964, 1044 |
| BplI | GAGNNNNNCTC | 4 cut(s) | 682, 714, 1557, 1589 |
| BpmI | CTGGAG | 1 cut(s) | 1353 |
| Bpu10I | CCTNAGC | 1 cut(s) | 74 |
| Bpu1102I | GCTNAGC | 1 cut(s) | 789 |
| BpuMI | CCSGG | 1 cut(s) | 932 |
| Bsa29I | ATCGAT | 1 cut(s) | 417 |
| BsaBI | GATNNNNATC | 2 cut(s) | 444, 1336 |
| BsaI | GGTCTC | 1 cut(s) | 940 |
| BsaJI | CCNNGG | 2 cut(s) | 468, 1542 |
| BsaWI | WCCGGW | 1 cut(s) | 1343 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 1619, 1649 |
| Bsc4I | CCNNNNNNNGG | 4 cut(s) | 1287, 1328, 1373, 1543 |
| Bse118I | RCCGGY | 1 cut(s) | 1343 |
| Bse1I | ACTGG | 1 cut(s) | 866 |
| Bse21I | CCTNAGG | 1 cut(s) | 1286 |
| Bse3DI | GCAATG | 2 cut(s) | 166, 978 |
| Bse8I | GATNNNNATC | 2 cut(s) | 444, 1336 |
| BseBI | CCWGG | 1 cut(s) | 519 |
| BseCI | ATCGAT | 1 cut(s) | 417 |
| BseDI | CCNNGG | 2 cut(s) | 468, 1542 |
| BseGI | GGATG | 2 cut(s) | 124, 568 |
| BseJI | GATNNNNATC | 2 cut(s) | 444, 1336 |
| BseLI | CCNNNNNNNGG | 4 cut(s) | 1287, 1328, 1373, 1543 |
| BseMI | GCAATG | 2 cut(s) | 166, 978 |
| BseMII | CTCAG | 3 cut(s) | 88, 1510, 1586 |
| BseNI | ACTGG | 1 cut(s) | 866 |
| BseSI | GKGCMC | 1 cut(s) | 632 |
| BseXI | GCAGC | 5 cut(s) | 229, 236, 791, 1411, 1414 |
| BseYI | CCCAGC | 1 cut(s) | 1111 |
| BsgI | GTGCAG | 1 cut(s) | 168 |
| BshFI | GGCC | 2 cut(s) | 1377, 1462 |
| BshTI | ACCGGT | 1 cut(s) | 1343 |
| BshVI | ATCGAT | 1 cut(s) | 417 |
| BsiSI | CCGG | 2 cut(s) | 932, 1344 |
| BslFI | GGGAC | 1 cut(s) | 519 |
| BslI | CCNNNNNNNGG | 4 cut(s) | 1287, 1328, 1373, 1543 |
| BsmAI | GTCTC | 1 cut(s) | 940 |
| BsmFI | GGGAC | 1 cut(s) | 519 |
| BsnI | GGCC | 2 cut(s) | 1377, 1462 |
| Bso31I | GGTCTC | 1 cut(s) | 940 |
| Bsp1286I | GDGCHC | 1 cut(s) | 632 |
| Bsp1407I | TGTACA | 1 cut(s) | 124 |
| Bsp143I | GATC | 8 cut(s) | 98, 172, 328, 418, 445, 892, 1002, 1331 |
| Bsp1720I | GCTNAGC | 1 cut(s) | 789 |
| Bsp19I | CCATGG | 1 cut(s) | 468 |
| BspACI | CCGC | 4 cut(s) | 185, 227, 1430, 1487 |
| BspANI | GGCC | 2 cut(s) | 1377, 1462 |
| BspCNI | CTCAG | 3 cut(s) | 87, 1509, 1587 |
| BspDI | ATCGAT | 1 cut(s) | 417 |
| BspHI | TCATGA | 1 cut(s) | 87 |
| BspLI | GGNNCC | 2 cut(s) | 1095, 1142 |
| BspMAI | CTGCAG | 1 cut(s) | 106 |
| BspPI | GGATC | 2 cut(s) | 413, 1339 |
| BspQI | GCTCTTC | 2 cut(s) | 888, 1558 |
| BspTNI | GGTCTC | 1 cut(s) | 940 |
| BsrDI | GCAATG | 2 cut(s) | 166, 978 |
| BsrFI | RCCGGY | 1 cut(s) | 1343 |
| BsrGI | TGTACA | 1 cut(s) | 124 |
| BsrI | ACTGG | 1 cut(s) | 866 |
| BssAI | RCCGGY | 1 cut(s) | 1343 |
| BssECI | CCNNGG | 2 cut(s) | 468, 1542 |
| BssMI | GATC | 8 cut(s) | 98, 172, 328, 418, 445, 892, 1002, 1331 |
| BssT1I | CCWWGG | 2 cut(s) | 468, 1542 |
| Bst2UI | CCWGG | 1 cut(s) | 519 |
| Bst4CI | ACNGT | 1 cut(s) | 485 |
| Bst6I | CTCTTC | 5 cut(s) | 468, 888, 1012, 1553, 1558 |
| BstAPI | GCANNNNNTGC | 2 cut(s) | 110, 1334 |
| BstAUI | TGTACA | 1 cut(s) | 124 |
| BstC8I | GCNNGC | 4 cut(s) | 879, 1375, 1432, 1534 |
| BstDEI | CTNAG | 9 cut(s) | 74, 95, 589, 729, 789, 1286, 1496, 1505, 1595 |
| BstDSI | CCRYGG | 1 cut(s) | 468 |
| BstENI | CCTNNNNNAGG | 1 cut(s) | 1285 |
| BstF5I | GGATG | 2 cut(s) | 124, 568 |
| BstKTI | GATC | 8 cut(s) | 101, 175, 331, 421, 448, 895, 1005, 1334 |
| BstMAI | GTCTC | 1 cut(s) | 940 |
| BstMBI | GATC | 8 cut(s) | 98, 172, 328, 418, 445, 892, 1002, 1331 |
| BstMWI | GCNNNNNNNGC | 7 cut(s) | 32, 110, 785, 980, 1325, 1334, 1574 |
| BstNI | CCWGG | 1 cut(s) | 519 |
| BstSCI | CCNGG | 2 cut(s) | 517, 930 |
| BstSFI | CTRYAG | 3 cut(s) | 102, 318, 1297 |
| BstSLI | GKGCMC | 1 cut(s) | 632 |
| BstV1I | GCAGC | 5 cut(s) | 229, 236, 791, 1411, 1414 |
| BstV2I | GAAGAC | 3 cut(s) | 381, 964, 1044 |
| BstX2I | RGATCY | 2 cut(s) | 98, 1331 |
| BstXI | CCANNNNNNTGG | 1 cut(s) | 917 |
| BstYI | RGATCY | 2 cut(s) | 98, 1331 |
| Bsu15I | ATCGAT | 1 cut(s) | 417 |
| Bsu36I | CCTNAGG | 1 cut(s) | 1286 |
| BsuRI | GGCC | 2 cut(s) | 1377, 1462 |
| BsuTUI | ATCGAT | 1 cut(s) | 417 |
| BtgI | CCRYGG | 1 cut(s) | 468 |
| BtsCI | GGATG | 2 cut(s) | 124, 568 |
| BtsIMutI | CAGTG | 2 cut(s) | 481, 1410 |
| Cac8I | GCNNGC | 4 cut(s) | 879, 1375, 1432, 1534 |
| CaiI | CAGNNNCTG | 2 cut(s) | 437, 1334 |
| CciI | TCATGA | 1 cut(s) | 87 |
| Cfr10I | RCCGGY | 1 cut(s) | 1343 |
| Cfr13I | GGNCC | 2 cut(s) | 521, 1141 |
| ClaI | ATCGAT | 1 cut(s) | 417 |
| Csp6I | GTAC | 2 cut(s) | 125, 1347 |
| CspAI | ACCGGT | 1 cut(s) | 1343 |
| CspCI | CAANNNNNGTGG | 2 cut(s) | 352, 387 |
| CviAII | CATG | 3 cut(s) | 88, 128, 469 |
| CviQI | GTAC | 2 cut(s) | 125, 1347 |
| DdeI | CTNAG | 9 cut(s) | 74, 95, 589, 729, 789, 1286, 1496, 1505, 1595 |
| DpnI | GATC | 8 cut(s) | 100, 174, 330, 420, 447, 894, 1004, 1333 |
| DpnII | GATC | 8 cut(s) | 98, 172, 328, 418, 445, 892, 1002, 1331 |
| DraI | TTTAAA | 2 cut(s) | 534, 1384 |
| Eam1104I | CTCTTC | 5 cut(s) | 468, 888, 1012, 1553, 1558 |
| EarI | CTCTTC | 5 cut(s) | 468, 888, 1012, 1553, 1558 |
| Eco130I | CCWWGG | 2 cut(s) | 468, 1542 |
| Eco147I | AGGCCT | 1 cut(s) | 1462 |
| Eco31I | GGTCTC | 1 cut(s) | 940 |
| Eco47I | GGWCC | 2 cut(s) | 521, 1141 |
| Eco81I | CCTNAGG | 1 cut(s) | 1286 |
| EcoNI | CCTNNNNNAGG | 1 cut(s) | 1285 |
| EcoO109I | RGGNCCY | 1 cut(s) | 1141 |
| EcoRI | GAATTC | 1 cut(s) | 921 |
| EcoRII | CCWGG | 1 cut(s) | 517 |
| EcoT14I | CCWWGG | 2 cut(s) | 468, 1542 |
| ErhI | CCWWGG | 2 cut(s) | 468, 1542 |
| FaeI | CATG | 3 cut(s) | 91, 131, 472 |
| FalI | AAGNNNNNCTT | 4 cut(s) | 15, 47, 729, 761 |
| FaqI | GGGAC | 1 cut(s) | 519 |
| FatI | CATG | 3 cut(s) | 87, 127, 468 |
| FauI | CCCGC | 1 cut(s) | 1423 |
| Fnu4HI | GCNGC | 6 cut(s) | 186, 225, 243, 780, 1425, 1428 |
| FokI | GGATG | 2 cut(s) | 131, 575 |
| Fsp4HI | GCNGC | 6 cut(s) | 186, 225, 243, 780, 1425, 1428 |
| FspBI | CTAG | 5 cut(s) | 645, 890, 969, 1469, 1583 |
| GluI | GCNGC | 6 cut(s) | 186, 225, 243, 780, 1425, 1428 |
| GsaI | CCCAGC | 1 cut(s) | 1115 |
| GsuI | CTGGAG | 1 cut(s) | 1353 |
| HaeIII | GGCC | 2 cut(s) | 1377, 1462 |
| HapII | CCGG | 2 cut(s) | 932, 1344 |
| Hin1II | CATG | 3 cut(s) | 91, 131, 472 |
| HindIII | AAGCTT | 1 cut(s) | 791 |
| HpaII | CCGG | 2 cut(s) | 932, 1344 |
| HphI | GGTGA | 1 cut(s) | 182 |
| Hpy166II | GTNNAC | 2 cut(s) | 355, 493 |
| Hpy188I | TCNGA | 6 cut(s) | 400, 433, 552, 940, 1135, 1657 |
| Hpy188III | TCNNGA | 6 cut(s) | 88, 299, 364, 524, 596, 678 |
| Hpy8I | GTNNAC | 2 cut(s) | 355, 493 |
| HpyAV | CCTTC | 3 cut(s) | 34, 768, 1116 |
| HpyCH4III | ACNGT | 1 cut(s) | 485 |
| HpyCH4V | TGCA | 7 cut(s) | 104, 149, 256, 336, 779, 946, 1337 |
| HpyF10VI | GCNNNNNNNGC | 7 cut(s) | 32, 110, 785, 980, 1325, 1334, 1574 |
| HpyF3I | CTNAG | 9 cut(s) | 74, 95, 589, 729, 789, 1286, 1496, 1505, 1595 |
| Hsp92II | CATG | 3 cut(s) | 91, 131, 472 |
| Kzo9I | GATC | 8 cut(s) | 98, 172, 328, 418, 445, 892, 1002, 1331 |
| LguI | GCTCTTC | 2 cut(s) | 888, 1558 |
| LmnI | GCTCC | 2 cut(s) | 520, 1324 |
| Lsp1109I | GCAGC | 5 cut(s) | 229, 236, 791, 1411, 1414 |
| LweI | GCATC | 2 cut(s) | 298, 1346 |
| MaeI | CTAG | 5 cut(s) | 645, 890, 969, 1469, 1583 |
| MaeIII | GTNAC | 1 cut(s) | 640 |
| MalI | GATC | 8 cut(s) | 100, 174, 330, 420, 447, 894, 1004, 1333 |
| MboI | GATC | 8 cut(s) | 98, 172, 328, 418, 445, 892, 1002, 1331 |
| MfeI | CAATTG | 2 cut(s) | 498, 1678 |
| MflI | RGATCY | 2 cut(s) | 98, 1331 |
| MhlI | GDGCHC | 1 cut(s) | 632 |
| MlyI | GAGTC | 4 cut(s) | 376, 395, 806, 1615 |
| MroXI | GAANNNNTTC | 3 cut(s) | 477, 685, 1628 |
| MseI | TTAA | 9 cut(s) | 53, 219, 533, 570, 623, 771, 807, 1229, 1383 |
| MslI | CAYNNNNRTG | 2 cut(s) | 561, 983 |
| MspA1I | CMGCKG | 3 cut(s) | 227, 1373, 1487 |
| MspI | CCGG | 2 cut(s) | 932, 1344 |
| MspR9I | CCNGG | 2 cut(s) | 519, 932 |
| MunI | CAATTG | 2 cut(s) | 498, 1678 |
| MvaI | CCWGG | 1 cut(s) | 519 |
| MwoI | GCNNNNNNNGC | 7 cut(s) | 32, 110, 785, 980, 1325, 1334, 1574 |
| NciI | CCSGG | 1 cut(s) | 932 |
| NcoI | CCATGG | 1 cut(s) | 468 |
| NdeII | GATC | 8 cut(s) | 98, 172, 328, 418, 445, 892, 1002, 1331 |
| NlaIII | CATG | 3 cut(s) | 91, 131, 472 |
| NlaIV | GGNNCC | 2 cut(s) | 1095, 1142 |
| PagI | TCATGA | 1 cut(s) | 87 |
| PceI | AGGCCT | 1 cut(s) | 1462 |
| PciSI | GCTCTTC | 2 cut(s) | 888, 1558 |
| PdmI | GAANNNNTTC | 3 cut(s) | 477, 685, 1628 |
| PinAI | ACCGGT | 1 cut(s) | 1343 |
| PkrI | GCNGC | 6 cut(s) | 187, 226, 244, 781, 1426, 1429 |
| PleI | GAGTC | 4 cut(s) | 375, 394, 806, 1614 |
| PpsI | GAGTC | 4 cut(s) | 375, 394, 806, 1614 |
| PpuMI | RGGWCCY | 1 cut(s) | 1141 |
| Psp5II | RGGWCCY | 1 cut(s) | 1141 |
| Psp6I | CCWGG | 1 cut(s) | 517 |
| PspFI | CCCAGC | 1 cut(s) | 1111 |
| PspGI | CCWGG | 1 cut(s) | 517 |
| PspN4I | GGNNCC | 2 cut(s) | 1095, 1142 |
| PspPI | GGNCC | 2 cut(s) | 521, 1141 |
| PspPPI | RGGWCCY | 1 cut(s) | 1141 |
| PstI | CTGCAG | 1 cut(s) | 106 |
| PstNI | CAGNNNCTG | 2 cut(s) | 437, 1334 |
| PsuI | RGATCY | 2 cut(s) | 98, 1331 |
| PvuII | CAGCTG | 1 cut(s) | 1373 |
| RsaI | GTAC | 2 cut(s) | 126, 1348 |
| RsaNI | GTAC | 2 cut(s) | 125, 1347 |
| RseI | CAYNNNNRTG | 2 cut(s) | 561, 983 |
| SapI | GCTCTTC | 2 cut(s) | 888, 1558 |
| SaqAI | TTAA | 9 cut(s) | 53, 219, 533, 570, 623, 771, 807, 1229, 1383 |
| SatI | GCNGC | 6 cut(s) | 186, 225, 243, 780, 1425, 1428 |
| Sau3AI | GATC | 8 cut(s) | 98, 172, 328, 418, 445, 892, 1002, 1331 |
| Sau96I | GGNCC | 2 cut(s) | 521, 1141 |
| SchI | GAGTC | 4 cut(s) | 376, 395, 806, 1615 |
| ScrFI | CCNGG | 2 cut(s) | 519, 932 |
| SduI | GDGCHC | 1 cut(s) | 632 |
| SfaNI | GCATC | 2 cut(s) | 298, 1346 |
| SfcI | CTRYAG | 3 cut(s) | 102, 318, 1297 |
| SinI | GGWCC | 2 cut(s) | 521, 1141 |
| SmiMI | CAYNNNNRTG | 2 cut(s) | 561, 983 |
| SseBI | AGGCCT | 1 cut(s) | 1462 |
| SsiI | CCGC | 4 cut(s) | 185, 227, 1430, 1487 |
| SspI | AATATT | 3 cut(s) | 901, 1102, 1648 |
| SspMI | CTAG | 5 cut(s) | 645, 890, 969, 1469, 1583 |
| StuI | AGGCCT | 1 cut(s) | 1462 |
| StyD4I | CCNGG | 2 cut(s) | 517, 930 |
| StyI | CCWWGG | 2 cut(s) | 468, 1542 |
| TaaI | ACNGT | 1 cut(s) | 485 |
| TaqI | TCGA | 2 cut(s) | 417, 689 |
| TatI | WGTACW | 1 cut(s) | 124 |
| TauI | GCSGC | 1 cut(s) | 188 |
| Tru1I | TTAA | 9 cut(s) | 53, 219, 533, 570, 623, 771, 807, 1229, 1383 |
| Tru9I | TTAA | 9 cut(s) | 53, 219, 533, 570, 623, 771, 807, 1229, 1383 |
| TscAI | CASTG | 2 cut(s) | 488, 1410 |
| TseI | GCWGC | 5 cut(s) | 224, 242, 779, 1424, 1427 |
| TspDTI | ATGAA | 7 cut(s) | 48, 76, 104, 269, 278, 843, 1426 |
| TspRI | CASTG | 2 cut(s) | 488, 1410 |
| VpaK11BI | GGWCC | 2 cut(s) | 521, 1141 |
| XagI | CCTNNNNNAGG | 1 cut(s) | 1285 |
| XapI | RAATTY | 4 cut(s) | 55, 401, 921, 1080 |
| XmnI | GAANNNNTTC | 3 cut(s) | 477, 685, 1628 |
| XspI | CTAG | 5 cut(s) | 645, 890, 969, 1469, 1583 |