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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccB1I | GGYRCC | 1 cut(s) | 687 |
| AccIII | TCCGGA | 1 cut(s) | 652 |
| AciI | CCGC | 2 cut(s) | 364, 766 |
| AclWI | GGATC | 1 cut(s) | 554 |
| AcsI | RAATTY | 1 cut(s) | 431 |
| AcyI | GRCGYC | 1 cut(s) | 688 |
| AfiI | CCNNNNNNNGG | 1 cut(s) | 683 |
| AgsI | TTSAA | 3 cut(s) | 125, 379, 802 |
| AjnI | CCWGG | 1 cut(s) | 132 |
| AjuI | GAANNNNNNNTTGG | 2 cut(s) | 291, 323 |
| AluBI | AGCT | 4 cut(s) | 158, 164, 565, 618 |
| AluI | AGCT | 4 cut(s) | 158, 164, 565, 618 |
| Alw26I | GTCTC | 1 cut(s) | 622 |
| AlwI | GGATC | 1 cut(s) | 554 |
| Aor13HI | TCCGGA | 1 cut(s) | 652 |
| AoxI | GGCC | 1 cut(s) | 96 |
| ApoI | RAATTY | 1 cut(s) | 431 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 408 |
| AspLEI | GCGC | 1 cut(s) | 690 |
| AsuHPI | GGTGA | 1 cut(s) | 214 |
| AxyI | CCTNAGG | 1 cut(s) | 678 |
| BanI | GGYRCC | 1 cut(s) | 687 |
| BbsI | GAAGAC | 1 cut(s) | 276 |
| BccI | CCATC | 3 cut(s) | 345, 499, 500 |
| BciT130I | CCWGG | 1 cut(s) | 134 |
| BcoDI | GTCTC | 1 cut(s) | 622 |
| BfaI | CTAG | 6 cut(s) | 110, 129, 341, 711, 774, 805 |
| BfmI | CTRYAG | 1 cut(s) | 537 |
| BfoI | RGCGCY | 1 cut(s) | 691 |
| BglI | GCCNNNNNGGC | 1 cut(s) | 191 |
| Bme1390I | CCNGG | 1 cut(s) | 134 |
| BmiI | GGNNCC | 3 cut(s) | 574, 689, 788 |
| BmrFI | CCNGG | 1 cut(s) | 134 |
| BmsI | GCATC | 1 cut(s) | 97 |
| BpiI | GAAGAC | 1 cut(s) | 276 |
| BpuEI | CTTGAG | 2 cut(s) | 77, 144 |
| Bsa29I | ATCGAT | 1 cut(s) | 528 |
| BsaHI | GRCGYC | 1 cut(s) | 688 |
| BsaI | GGTCTC | 1 cut(s) | 622 |
| BsaJI | CCNNGG | 1 cut(s) | 186 |
| BsaWI | WCCGGW | 1 cut(s) | 652 |
| Bsc4I | CCNNNNNNNGG | 1 cut(s) | 683 |
| Bse1I | ACTGG | 2 cut(s) | 27, 52 |
| Bse21I | CCTNAGG | 1 cut(s) | 678 |
| BseAI | TCCGGA | 1 cut(s) | 652 |
| BseBI | CCWGG | 1 cut(s) | 134 |
| BseCI | ATCGAT | 1 cut(s) | 528 |
| BseDI | CCNNGG | 1 cut(s) | 186 |
| BseGI | GGATG | 1 cut(s) | 731 |
| BseLI | CCNNNNNNNGG | 1 cut(s) | 683 |
| BseNI | ACTGG | 2 cut(s) | 27, 52 |
| BshFI | GGCC | 1 cut(s) | 98 |
| BshNI | GGYRCC | 1 cut(s) | 687 |
| BshVI | ATCGAT | 1 cut(s) | 528 |
| BsiSI | CCGG | 1 cut(s) | 653 |
| BslFI | GGGAC | 1 cut(s) | 728 |
| BslI | CCNNNNNNNGG | 1 cut(s) | 683 |
| BsmAI | GTCTC | 1 cut(s) | 622 |
| BsmFI | GGGAC | 1 cut(s) | 728 |
| BsnI | GGCC | 1 cut(s) | 98 |
| Bso31I | GGTCTC | 1 cut(s) | 622 |
| Bsp13I | TCCGGA | 1 cut(s) | 652 |
| Bsp143I | GATC | 1 cut(s) | 546 |
| BspACI | CCGC | 2 cut(s) | 364, 766 |
| BspANI | GGCC | 1 cut(s) | 98 |
| BspDI | ATCGAT | 1 cut(s) | 528 |
| BspEI | TCCGGA | 1 cut(s) | 652 |
| BspHI | TCATGA | 1 cut(s) | 559 |
| BspLI | GGNNCC | 3 cut(s) | 574, 689, 788 |
| BspPI | GGATC | 1 cut(s) | 554 |
| BspQI | GCTCTTC | 1 cut(s) | 608 |
| BspT107I | GGYRCC | 1 cut(s) | 687 |
| BspTNI | GGTCTC | 1 cut(s) | 622 |
| BsrI | ACTGG | 2 cut(s) | 27, 52 |
| BssECI | CCNNGG | 1 cut(s) | 186 |
| BssMI | GATC | 1 cut(s) | 546 |
| BssNI | GRCGYC | 1 cut(s) | 688 |
| BssT1I | CCWWGG | 1 cut(s) | 186 |
| Bst2UI | CCWGG | 1 cut(s) | 134 |
| Bst4CI | ACNGT | 3 cut(s) | 148, 385, 538 |
| Bst6I | CTCTTC | 1 cut(s) | 608 |
| BstACI | GRCGYC | 1 cut(s) | 688 |
| BstC8I | GCNNGC | 1 cut(s) | 156 |
| BstDEI | CTNAG | 2 cut(s) | 513, 678 |
| BstEII | GGTNACC | 1 cut(s) | 761 |
| BstENI | CCTNNNNNAGG | 1 cut(s) | 681 |
| BstF5I | GGATG | 1 cut(s) | 731 |
| BstH2I | RGCGCY | 1 cut(s) | 691 |
| BstHHI | GCGC | 1 cut(s) | 690 |
| BstKTI | GATC | 1 cut(s) | 549 |
| BstMAI | GTCTC | 1 cut(s) | 622 |
| BstMBI | GATC | 1 cut(s) | 546 |
| BstMWI | GCNNNNNNNGC | 4 cut(s) | 170, 191, 241, 694 |
| BstNI | CCWGG | 1 cut(s) | 134 |
| BstNSI | RCATGY | 1 cut(s) | 142 |
| BstPI | GGTNACC | 1 cut(s) | 761 |
| BstSCI | CCNGG | 1 cut(s) | 132 |
| BstSFI | CTRYAG | 1 cut(s) | 537 |
| BstV2I | GAAGAC | 1 cut(s) | 276 |
| Bsu15I | ATCGAT | 1 cut(s) | 528 |
| Bsu36I | CCTNAGG | 1 cut(s) | 678 |
| BsuRI | GGCC | 1 cut(s) | 98 |
| BsuTUI | ATCGAT | 1 cut(s) | 528 |
| BtsCI | GGATG | 1 cut(s) | 731 |
| Cac8I | GCNNGC | 1 cut(s) | 156 |
| CciI | TCATGA | 1 cut(s) | 559 |
| CfoI | GCGC | 1 cut(s) | 690 |
| ClaI | ATCGAT | 1 cut(s) | 528 |
| CviAII | CATG | 5 cut(s) | 139, 236, 560, 577, 596 |
| DdeI | CTNAG | 2 cut(s) | 513, 678 |
| DinI | GGCGCC | 1 cut(s) | 689 |
| DpnI | GATC | 1 cut(s) | 548 |
| DpnII | GATC | 1 cut(s) | 546 |
| Eam1104I | CTCTTC | 1 cut(s) | 608 |
| EarI | CTCTTC | 1 cut(s) | 608 |
| Eco130I | CCWWGG | 1 cut(s) | 186 |
| Eco31I | GGTCTC | 1 cut(s) | 622 |
| Eco32I | GATATC | 2 cut(s) | 59, 448 |
| Eco81I | CCTNAGG | 1 cut(s) | 678 |
| Eco91I | GGTNACC | 1 cut(s) | 761 |
| EcoNI | CCTNNNNNAGG | 1 cut(s) | 681 |
| EcoO65I | GGTNACC | 1 cut(s) | 761 |
| EcoRI | GAATTC | 1 cut(s) | 431 |
| EcoRII | CCWGG | 1 cut(s) | 132 |
| EcoRV | GATATC | 2 cut(s) | 59, 448 |
| EcoT14I | CCWWGG | 1 cut(s) | 186 |
| EcoT22I | ATGCAT | 1 cut(s) | 237 |
| EgeI | GGCGCC | 1 cut(s) | 689 |
| EheI | GGCGCC | 1 cut(s) | 689 |
| ErhI | CCWWGG | 1 cut(s) | 186 |
| FaeI | CATG | 5 cut(s) | 142, 239, 563, 580, 599 |
| FaqI | GGGAC | 1 cut(s) | 728 |
| FatI | CATG | 5 cut(s) | 138, 235, 559, 576, 595 |
| FauNDI | CATATG | 1 cut(s) | 231 |
| FokI | GGATG | 1 cut(s) | 738 |
| FspBI | CTAG | 6 cut(s) | 110, 129, 341, 711, 774, 805 |
| GlaI | GCGC | 1 cut(s) | 689 |
| HaeII | RGCGCY | 1 cut(s) | 691 |
| HaeIII | GGCC | 1 cut(s) | 98 |
| HapII | CCGG | 1 cut(s) | 653 |
| HhaI | GCGC | 1 cut(s) | 690 |
| Hin1I | GRCGYC | 1 cut(s) | 688 |
| Hin1II | CATG | 5 cut(s) | 142, 239, 563, 580, 599 |
| Hin6I | GCGC | 1 cut(s) | 688 |
| HinP1I | GCGC | 1 cut(s) | 688 |
| HindIII | AAGCTT | 1 cut(s) | 162 |
| HinfI | GANTC | 8 cut(s) | 105, 118, 223, 239, 323, 475, 525, 656 |
| HpaII | CCGG | 1 cut(s) | 653 |
| HphI | GGTGA | 1 cut(s) | 214 |
| Hpy166II | GTNNAC | 1 cut(s) | 82 |
| Hpy188III | TCNNGA | 9 cut(s) | 54, 74, 122, 335, 379, 560, 627, 653, 723 |
| Hpy8I | GTNNAC | 1 cut(s) | 82 |
| HpyAV | CCTTC | 3 cut(s) | 95, 273, 752 |
| HpyCH4III | ACNGT | 3 cut(s) | 148, 385, 538 |
| HpyCH4IV | ACGT | 1 cut(s) | 315 |
| HpyCH4V | TGCA | 1 cut(s) | 235 |
| HpyF10VI | GCNNNNNNNGC | 4 cut(s) | 170, 191, 241, 694 |
| HpyF3I | CTNAG | 2 cut(s) | 513, 678 |
| HpySE526I | ACGT | 1 cut(s) | 315 |
| Hsp92I | GRCGYC | 1 cut(s) | 688 |
| Hsp92II | CATG | 5 cut(s) | 142, 239, 563, 580, 599 |
| HspAI | GCGC | 1 cut(s) | 688 |
| KasI | GGCGCC | 1 cut(s) | 687 |
| Kpn2I | TCCGGA | 1 cut(s) | 652 |
| Kzo9I | GATC | 1 cut(s) | 546 |
| LguI | GCTCTTC | 1 cut(s) | 608 |
| LmnI | GCTCC | 3 cut(s) | 37, 249, 572 |
| LweI | GCATC | 1 cut(s) | 97 |
| MaeI | CTAG | 6 cut(s) | 110, 129, 341, 711, 774, 805 |
| MaeII | ACGT | 1 cut(s) | 315 |
| MaeIII | GTNAC | 5 cut(s) | 8, 320, 532, 668, 761 |
| MalI | GATC | 1 cut(s) | 548 |
| MboI | GATC | 1 cut(s) | 546 |
| MboII | GAAGA | 4 cut(s) | 278, 281, 311, 625 |
| MluCI | AATT | 5 cut(s) | 431, 567, 622, 661, 718 |
| Mly113I | GGCGCC | 1 cut(s) | 688 |
| MlyI | GAGTC | 4 cut(s) | 217, 317, 469, 665 |
| MnlI | CCTC | 5 cut(s) | 184, 371, 465, 677, 748 |
| Mph1103I | ATGCAT | 1 cut(s) | 237 |
| MroI | TCCGGA | 1 cut(s) | 652 |
| MroXI | GAANNNNTTC | 1 cut(s) | 408 |
| MseI | TTAA | 2 cut(s) | 417, 425 |
| MslI | CAYNNNNRTG | 1 cut(s) | 234 |
| MspI | CCGG | 1 cut(s) | 653 |
| MspR9I | CCNGG | 1 cut(s) | 134 |
| MvaI | CCWGG | 1 cut(s) | 134 |
| MwoI | GCNNNNNNNGC | 4 cut(s) | 170, 191, 241, 694 |
| NarI | GGCGCC | 1 cut(s) | 688 |
| NdeI | CATATG | 1 cut(s) | 231 |
| NdeII | GATC | 1 cut(s) | 546 |
| NlaIII | CATG | 5 cut(s) | 142, 239, 563, 580, 599 |
| NlaIV | GGNNCC | 3 cut(s) | 574, 689, 788 |
| NmuCI | GTSAC | 2 cut(s) | 320, 668 |
| NsiI | ATGCAT | 1 cut(s) | 237 |
| NspI | RCATGY | 1 cut(s) | 142 |
| PagI | TCATGA | 1 cut(s) | 559 |
| PciSI | GCTCTTC | 1 cut(s) | 608 |
| PdmI | GAANNNNTTC | 1 cut(s) | 408 |
| PfeI | GAWTC | 4 cut(s) | 105, 118, 239, 525 |
| PleI | GAGTC | 4 cut(s) | 217, 317, 469, 664 |
| PluTI | GGCGCC | 1 cut(s) | 691 |
| PpsI | GAGTC | 4 cut(s) | 217, 317, 469, 664 |
| Psp6I | CCWGG | 1 cut(s) | 132 |
| PspEI | GGTNACC | 1 cut(s) | 761 |
| PspGI | CCWGG | 1 cut(s) | 132 |
| PspN4I | GGNNCC | 3 cut(s) | 574, 689, 788 |
| RseI | CAYNNNNRTG | 1 cut(s) | 234 |
| SapI | GCTCTTC | 1 cut(s) | 608 |
| SaqAI | TTAA | 2 cut(s) | 417, 425 |
| Sau3AI | GATC | 1 cut(s) | 546 |
| SchI | GAGTC | 4 cut(s) | 217, 317, 469, 665 |
| ScrFI | CCNGG | 1 cut(s) | 134 |
| SfaNI | GCATC | 1 cut(s) | 97 |
| SfcI | CTRYAG | 1 cut(s) | 537 |
| SfoI | GGCGCC | 1 cut(s) | 689 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 234 |
| SmlI | CTYRAG | 2 cut(s) | 92, 159 |
| SmoI | CTYRAG | 2 cut(s) | 92, 159 |
| Sse9I | AATT | 5 cut(s) | 431, 567, 622, 661, 718 |
| SsiI | CCGC | 2 cut(s) | 364, 766 |
| SspDI | GGCGCC | 1 cut(s) | 687 |
| SspMI | CTAG | 6 cut(s) | 110, 129, 341, 711, 774, 805 |
| StyD4I | CCNGG | 1 cut(s) | 132 |
| StyI | CCWWGG | 1 cut(s) | 186 |
| TaaI | ACNGT | 3 cut(s) | 148, 385, 538 |
| TaiI | ACGT | 1 cut(s) | 318 |
| TaqI | TCGA | 4 cut(s) | 297, 523, 528, 626 |
| TasI | AATT | 5 cut(s) | 431, 567, 622, 661, 718 |
| TfiI | GAWTC | 4 cut(s) | 105, 118, 239, 525 |
| Tru1I | TTAA | 2 cut(s) | 417, 425 |
| Tru9I | TTAA | 2 cut(s) | 417, 425 |
| TseFI | GTSAC | 2 cut(s) | 320, 668 |
| Tsp45I | GTSAC | 2 cut(s) | 320, 668 |
| TspDTI | ATGAA | 4 cut(s) | 275, 279, 548, 593 |
| TspGWI | ACGGA | 3 cut(s) | 308, 559, 799 |
| XagI | CCTNNNNNAGG | 1 cut(s) | 681 |
| XapI | RAATTY | 1 cut(s) | 431 |
| XceI | RCATGY | 1 cut(s) | 142 |
| XmnI | GAANNNNTTC | 1 cut(s) | 408 |
| XspI | CTAG | 6 cut(s) | 110, 129, 341, 711, 774, 805 |
| Zsp2I | ATGCAT | 1 cut(s) | 237 |