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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccB1I | GGYRCC | 1 cut(s) | 189 |
| AciI | CCGC | 3 cut(s) | 187, 727, 740 |
| AcvI | CACGTG | 4 cut(s) | 767, 785, 800, 818 |
| AcyI | GRCGYC | 1 cut(s) | 190 |
| AdeI | CACNNNGTG | 2 cut(s) | 770, 803 |
| AfaI | GTAC | 1 cut(s) | 691 |
| AfeI | AGCGCT | 1 cut(s) | 258 |
| AfiI | CCNNNNNNNGG | 6 cut(s) | 64, 131, 393, 644, 645, 819 |
| AflIII | ACRYGT | 4 cut(s) | 764, 782, 797, 815 |
| AgsI | TTSAA | 5 cut(s) | 29, 96, 119, 307, 591 |
| AhdI | GACNNNNNGTC | 1 cut(s) | 343 |
| AjnI | CCWGG | 1 cut(s) | 130 |
| AluBI | AGCT | 8 cut(s) | 122, 173, 206, 371, 427, 529, 551, 827 |
| AluI | AGCT | 8 cut(s) | 122, 173, 206, 371, 427, 529, 551, 827 |
| Alw21I | GWGCWC | 1 cut(s) | 840 |
| Alw44I | GTGCAC | 1 cut(s) | 836 |
| Ama87I | CYCGRG | 1 cut(s) | 240 |
| Aor51HI | AGCGCT | 1 cut(s) | 258 |
| AoxI | GGCC | 2 cut(s) | 133, 694 |
| ApaI | GGGCCC | 1 cut(s) | 698 |
| ApaLI | GTGCAC | 1 cut(s) | 836 |
| ApeKI | GCWGC | 1 cut(s) | 848 |
| AseI | ATTAAT | 1 cut(s) | 534 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 372 |
| AspLEI | GCGC | 3 cut(s) | 192, 259, 651 |
| AspS9I | GGNCC | 2 cut(s) | 694, 695 |
| AvaI | CYCGRG | 1 cut(s) | 240 |
| BaeGI | GKGCMC | 2 cut(s) | 698, 840 |
| BanI | GGYRCC | 1 cut(s) | 189 |
| BanII | GRGCYC | 1 cut(s) | 698 |
| BauI | CACGAG | 2 cut(s) | 747, 839 |
| BbrPI | CACGTG | 4 cut(s) | 767, 785, 800, 818 |
| BbsI | GAAGAC | 1 cut(s) | 443 |
| Bbv12I | GWGCWC | 1 cut(s) | 840 |
| BbvI | GCAGC | 1 cut(s) | 860 |
| BciT130I | CCWGG | 1 cut(s) | 132 |
| BciVI | GTATCC | 1 cut(s) | 736 |
| BfaI | CTAG | 2 cut(s) | 15, 215 |
| BfoI | RGCGCY | 2 cut(s) | 193, 260 |
| BfuI | GTATCC | 1 cut(s) | 736 |
| BisI | GCNGC | 2 cut(s) | 188, 849 |
| BlsI | GCNGC | 2 cut(s) | 189, 850 |
| Bme1390I | CCNGG | 1 cut(s) | 132 |
| BmeRI | GACNNNNNGTC | 1 cut(s) | 343 |
| BmeT110I | CYCGRG | 1 cut(s) | 240 |
| BmgT120I | GGNCC | 2 cut(s) | 694, 695 |
| BmiI | GGNNCC | 3 cut(s) | 191, 604, 696 |
| BmrFI | CCNGG | 1 cut(s) | 132 |
| BmsI | GCATC | 3 cut(s) | 174, 226, 835 |
| BpiI | GAAGAC | 1 cut(s) | 443 |
| BsaAI | YACGTR | 4 cut(s) | 767, 785, 800, 818 |
| BsaHI | GRCGYC | 1 cut(s) | 190 |
| Bsc4I | CCNNNNNNNGG | 6 cut(s) | 64, 131, 393, 644, 645, 819 |
| BseBI | CCWGG | 1 cut(s) | 132 |
| BseGI | GGATG | 2 cut(s) | 567, 850 |
| BseLI | CCNNNNNNNGG | 6 cut(s) | 64, 131, 393, 644, 645, 819 |
| BseMII | CTCAG | 1 cut(s) | 223 |
| BseRI | GAGGAG | 2 cut(s) | 284, 437 |
| BseSI | GKGCMC | 2 cut(s) | 698, 840 |
| BseXI | GCAGC | 1 cut(s) | 860 |
| BshFI | GGCC | 2 cut(s) | 135, 696 |
| BshNI | GGYRCC | 1 cut(s) | 189 |
| BsiHKAI | GWGCWC | 1 cut(s) | 840 |
| BsiHKCI | CYCGRG | 1 cut(s) | 240 |
| BsiWI | CGTACG | 1 cut(s) | 689 |
| BslFI | GGGAC | 1 cut(s) | 690 |
| BslI | CCNNNNNNNGG | 6 cut(s) | 64, 131, 393, 644, 645, 819 |
| BsmFI | GGGAC | 1 cut(s) | 690 |
| BsnI | GGCC | 2 cut(s) | 135, 696 |
| BsoBI | CYCGRG | 1 cut(s) | 240 |
| Bsp120I | GGGCCC | 1 cut(s) | 694 |
| Bsp1286I | GDGCHC | 2 cut(s) | 698, 840 |
| BspACI | CCGC | 3 cut(s) | 187, 727, 740 |
| BspANI | GGCC | 2 cut(s) | 135, 696 |
| BspCNI | CTCAG | 1 cut(s) | 222 |
| BspLI | GGNNCC | 3 cut(s) | 191, 604, 696 |
| BspQI | GCTCTTC | 1 cut(s) | 378 |
| BspT107I | GGYRCC | 1 cut(s) | 189 |
| BssNI | GRCGYC | 1 cut(s) | 190 |
| BssSI | CACGAG | 2 cut(s) | 747, 839 |
| Bst2BI | CACGAG | 2 cut(s) | 747, 839 |
| Bst2UI | CCWGG | 1 cut(s) | 132 |
| Bst6I | CTCTTC | 2 cut(s) | 378, 414 |
| BstACI | GRCGYC | 1 cut(s) | 190 |
| BstBAI | YACGTR | 4 cut(s) | 767, 785, 800, 818 |
| BstC8I | GCNNGC | 2 cut(s) | 165, 653 |
| BstDEI | CTNAG | 1 cut(s) | 209 |
| BstEII | GGTNACC | 1 cut(s) | 67 |
| BstENI | CCTNNNNNAGG | 1 cut(s) | 129 |
| BstF5I | GGATG | 2 cut(s) | 567, 850 |
| BstH2I | RGCGCY | 2 cut(s) | 193, 260 |
| BstHHI | GCGC | 3 cut(s) | 192, 259, 651 |
| BstMWI | GCNNNNNNNGC | 1 cut(s) | 265 |
| BstNI | CCWGG | 1 cut(s) | 132 |
| BstNSI | RCATGY | 1 cut(s) | 167 |
| BstPI | GGTNACC | 1 cut(s) | 67 |
| BstSCI | CCNGG | 1 cut(s) | 130 |
| BstSLI | GKGCMC | 2 cut(s) | 698, 840 |
| BstV1I | GCAGC | 1 cut(s) | 860 |
| BstV2I | GAAGAC | 1 cut(s) | 443 |
| BsuI | GTATCC | 1 cut(s) | 736 |
| BsuRI | GGCC | 2 cut(s) | 135, 696 |
| BtsCI | GGATG | 2 cut(s) | 567, 850 |
| BtsIMutI | CAGTG | 1 cut(s) | 320 |
| Cac8I | GCNNGC | 2 cut(s) | 165, 653 |
| CfoI | GCGC | 3 cut(s) | 192, 259, 651 |
| Cfr13I | GGNCC | 2 cut(s) | 694, 695 |
| CseI | GACGC | 1 cut(s) | 601 |
| Csp6I | GTAC | 1 cut(s) | 690 |
| CviAII | CATG | 2 cut(s) | 164, 388 |
| CviQI | GTAC | 1 cut(s) | 690 |
| DdeI | CTNAG | 1 cut(s) | 209 |
| DinI | GGCGCC | 1 cut(s) | 191 |
| DraI | TTTAAA | 1 cut(s) | 736 |
| DraIII | CACNNNGTG | 2 cut(s) | 770, 803 |
| DriI | GACNNNNNGTC | 1 cut(s) | 343 |
| Eam1104I | CTCTTC | 2 cut(s) | 378, 414 |
| Eam1105I | GACNNNNNGTC | 1 cut(s) | 343 |
| EarI | CTCTTC | 2 cut(s) | 378, 414 |
| Eco147I | AGGCCT | 1 cut(s) | 135 |
| Eco24I | GRGCYC | 1 cut(s) | 698 |
| Eco32I | GATATC | 1 cut(s) | 474 |
| Eco47III | AGCGCT | 1 cut(s) | 258 |
| Eco72I | CACGTG | 4 cut(s) | 767, 785, 800, 818 |
| Eco88I | CYCGRG | 1 cut(s) | 240 |
| Eco91I | GGTNACC | 1 cut(s) | 67 |
| EcoNI | CCTNNNNNAGG | 1 cut(s) | 129 |
| EcoO65I | GGTNACC | 1 cut(s) | 67 |
| EcoRII | CCWGG | 1 cut(s) | 130 |
| EcoRV | GATATC | 1 cut(s) | 474 |
| EcoT38I | GRGCYC | 1 cut(s) | 698 |
| EgeI | GGCGCC | 1 cut(s) | 191 |
| EheI | GGCGCC | 1 cut(s) | 191 |
| FaeI | CATG | 2 cut(s) | 167, 391 |
| FaqI | GGGAC | 1 cut(s) | 690 |
| FatI | CATG | 2 cut(s) | 163, 387 |
| FauNDI | CATATG | 1 cut(s) | 195 |
| Fnu4HI | GCNGC | 2 cut(s) | 188, 849 |
| FokI | GGATG | 2 cut(s) | 554, 857 |
| FriOI | GRGCYC | 1 cut(s) | 698 |
| Fsp4HI | GCNGC | 2 cut(s) | 188, 849 |
| FspBI | CTAG | 2 cut(s) | 15, 215 |
| GlaI | GCGC | 3 cut(s) | 191, 258, 650 |
| GluI | GCNGC | 2 cut(s) | 188, 849 |
| HaeII | RGCGCY | 2 cut(s) | 193, 260 |
| HaeIII | GGCC | 2 cut(s) | 135, 696 |
| HgaI | GACGC | 1 cut(s) | 601 |
| HhaI | GCGC | 3 cut(s) | 192, 259, 651 |
| Hin1I | GRCGYC | 1 cut(s) | 190 |
| Hin1II | CATG | 2 cut(s) | 167, 391 |
| Hin6I | GCGC | 3 cut(s) | 190, 257, 649 |
| HinP1I | GCGC | 3 cut(s) | 190, 257, 649 |
| HinfI | GANTC | 3 cut(s) | 18, 38, 439 |
| Hpy166II | GTNNAC | 1 cut(s) | 838 |
| Hpy188I | TCNGA | 4 cut(s) | 52, 212, 337, 367 |
| Hpy188III | TCNNGA | 3 cut(s) | 96, 181, 242 |
| Hpy8I | GTNNAC | 1 cut(s) | 838 |
| Hpy99I | CGWCG | 1 cut(s) | 77 |
| HpyAV | CCTTC | 1 cut(s) | 301 |
| HpyCH4IV | ACGT | 5 cut(s) | 75, 766, 784, 799, 817 |
| HpyCH4V | TGCA | 6 cut(s) | 167, 353, 404, 635, 838, 848 |
| HpyF10VI | GCNNNNNNNGC | 1 cut(s) | 265 |
| HpyF3I | CTNAG | 1 cut(s) | 209 |
| HpySE526I | ACGT | 5 cut(s) | 75, 766, 784, 799, 817 |
| Hsp92I | GRCGYC | 1 cut(s) | 190 |
| Hsp92II | CATG | 2 cut(s) | 167, 391 |
| HspAI | GCGC | 3 cut(s) | 190, 257, 649 |
| KasI | GGCGCC | 1 cut(s) | 189 |
| LguI | GCTCTTC | 1 cut(s) | 378 |
| LmnI | GCTCC | 2 cut(s) | 127, 424 |
| LpnPI | CCDG | 4 cut(s) | 117, 144, 312, 489 |
| Lsp1109I | GCAGC | 1 cut(s) | 860 |
| LweI | GCATC | 3 cut(s) | 174, 226, 835 |
| MaeI | CTAG | 2 cut(s) | 15, 215 |
| MaeII | ACGT | 5 cut(s) | 75, 766, 784, 799, 817 |
| MaeIII | GTNAC | 2 cut(s) | 67, 773 |
| MboII | GAAGA | 3 cut(s) | 365, 431, 448 |
| MfeI | CAATTG | 1 cut(s) | 465 |
| MhlI | GDGCHC | 2 cut(s) | 698, 840 |
| MluCI | AATT | 8 cut(s) | 114, 361, 429, 465, 510, 580, 625, 757 |
| Mly113I | GGCGCC | 1 cut(s) | 190 |
| MlyI | GAGTC | 3 cut(s) | 12, 32, 433 |
| MmeI | TCCRAC | 2 cut(s) | 169, 360 |
| MroXI | GAANNNNTTC | 1 cut(s) | 372 |
| MseI | TTAA | 4 cut(s) | 342, 522, 534, 735 |
| MslI | CAYNNNNRTG | 1 cut(s) | 843 |
| MspR9I | CCNGG | 1 cut(s) | 132 |
| MunI | CAATTG | 1 cut(s) | 465 |
| MvaI | CCWGG | 1 cut(s) | 132 |
| MwoI | GCNNNNNNNGC | 1 cut(s) | 265 |
| NarI | GGCGCC | 1 cut(s) | 190 |
| NdeI | CATATG | 1 cut(s) | 195 |
| NlaIII | CATG | 2 cut(s) | 167, 391 |
| NlaIV | GGNNCC | 3 cut(s) | 191, 604, 696 |
| NspI | RCATGY | 1 cut(s) | 167 |
| PaeI | GCATGC | 1 cut(s) | 167 |
| PaeR7I | CTCGAG | 1 cut(s) | 240 |
| PceI | AGGCCT | 1 cut(s) | 135 |
| PciSI | GCTCTTC | 1 cut(s) | 378 |
| PdmI | GAANNNNTTC | 1 cut(s) | 372 |
| Pfl23II | CGTACG | 1 cut(s) | 689 |
| PkrI | GCNGC | 2 cut(s) | 189, 850 |
| PleI | GAGTC | 3 cut(s) | 12, 32, 433 |
| PluTI | GGCGCC | 1 cut(s) | 193 |
| PmaCI | CACGTG | 4 cut(s) | 767, 785, 800, 818 |
| PmlI | CACGTG | 4 cut(s) | 767, 785, 800, 818 |
| PpsI | GAGTC | 3 cut(s) | 12, 32, 433 |
| Ppu21I | YACGTR | 4 cut(s) | 767, 785, 800, 818 |
| PshBI | ATTAAT | 1 cut(s) | 534 |
| Psp6I | CCWGG | 1 cut(s) | 130 |
| PspCI | CACGTG | 4 cut(s) | 767, 785, 800, 818 |
| PspEI | GGTNACC | 1 cut(s) | 67 |
| PspGI | CCWGG | 1 cut(s) | 130 |
| PspLI | CGTACG | 1 cut(s) | 689 |
| PspN4I | GGNNCC | 3 cut(s) | 191, 604, 696 |
| PspOMI | GGGCCC | 1 cut(s) | 694 |
| PspPI | GGNCC | 2 cut(s) | 694, 695 |
| RsaI | GTAC | 1 cut(s) | 691 |
| RsaNI | GTAC | 1 cut(s) | 690 |
| RseI | CAYNNNNRTG | 1 cut(s) | 843 |
| SapI | GCTCTTC | 1 cut(s) | 378 |
| SaqAI | TTAA | 4 cut(s) | 342, 522, 534, 735 |
| SatI | GCNGC | 2 cut(s) | 188, 849 |
| Sau96I | GGNCC | 2 cut(s) | 694, 695 |
| SchI | GAGTC | 3 cut(s) | 12, 32, 433 |
| ScrFI | CCNGG | 1 cut(s) | 132 |
| SduI | GDGCHC | 2 cut(s) | 698, 840 |
| SfaNI | GCATC | 3 cut(s) | 174, 226, 835 |
| SfoI | GGCGCC | 1 cut(s) | 191 |
| Sfr274I | CTCGAG | 1 cut(s) | 240 |
| SlaI | CTCGAG | 1 cut(s) | 240 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 843 |
| SmlI | CTYRAG | 1 cut(s) | 240 |
| SmoI | CTYRAG | 1 cut(s) | 240 |
| SphI | GCATGC | 1 cut(s) | 167 |
| Sse9I | AATT | 8 cut(s) | 114, 361, 429, 465, 510, 580, 625, 757 |
| SseBI | AGGCCT | 1 cut(s) | 135 |
| SsiI | CCGC | 3 cut(s) | 187, 727, 740 |
| SspDI | GGCGCC | 1 cut(s) | 189 |
| SspI | AATATT | 2 cut(s) | 105, 538 |
| SspMI | CTAG | 2 cut(s) | 15, 215 |
| StuI | AGGCCT | 1 cut(s) | 135 |
| StyD4I | CCNGG | 1 cut(s) | 130 |
| TaiI | ACGT | 5 cut(s) | 78, 769, 787, 802, 820 |
| TaqI | TCGA | 3 cut(s) | 5, 21, 241 |
| TasI | AATT | 8 cut(s) | 114, 361, 429, 465, 510, 580, 625, 757 |
| TauI | GCSGC | 1 cut(s) | 190 |
| Tru1I | TTAA | 4 cut(s) | 342, 522, 534, 735 |
| Tru9I | TTAA | 4 cut(s) | 342, 522, 534, 735 |
| TscAI | CASTG | 1 cut(s) | 320 |
| TseI | GCWGC | 1 cut(s) | 848 |
| TspDTI | ATGAA | 2 cut(s) | 24, 245 |
| TspGWI | ACGGA | 1 cut(s) | 605 |
| TspRI | CASTG | 1 cut(s) | 320 |
| VneI | GTGCAC | 1 cut(s) | 836 |
| VspI | ATTAAT | 1 cut(s) | 534 |
| XagI | CCTNNNNNAGG | 1 cut(s) | 129 |
| XceI | RCATGY | 1 cut(s) | 167 |
| XhoI | CTCGAG | 1 cut(s) | 240 |
| XmnI | GAANNNNTTC | 1 cut(s) | 372 |
| XspI | CTAG | 2 cut(s) | 15, 215 |