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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AciI | CCGC | 1 cut(s) | 144 |
| AcsI | RAATTY | 2 cut(s) | 210, 524 |
| AfaI | GTAC | 1 cut(s) | 628 |
| AfiI | CCNNNNNNNGG | 1 cut(s) | 15 |
| AgsI | TTSAA | 1 cut(s) | 472 |
| AjiI | CACGTC | 4 cut(s) | 54, 102, 122, 232 |
| AjuI | GAANNNNNNNTTGG | 2 cut(s) | 384, 416 |
| AleI | CACNNNNGTG | 1 cut(s) | 146 |
| AluBI | AGCT | 4 cut(s) | 83, 110, 220, 251 |
| AluI | AGCT | 4 cut(s) | 83, 110, 220, 251 |
| Alw26I | GTCTC | 1 cut(s) | 388 |
| Ama87I | CYCGRG | 1 cut(s) | 215 |
| AoxI | GGCC | 2 cut(s) | 17, 189 |
| ApeKI | GCWGC | 5 cut(s) | 4, 35, 71, 83, 107 |
| ApoI | RAATTY | 2 cut(s) | 210, 524 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 501 |
| AspS9I | GGNCC | 2 cut(s) | 18, 115 |
| AsuHPI | GGTGA | 1 cut(s) | 133 |
| AvaI | CYCGRG | 1 cut(s) | 215 |
| AvaII | GGWCC | 1 cut(s) | 115 |
| BbsI | GAAGAC | 2 cut(s) | 369, 572 |
| BbvI | GCAGC | 5 cut(s) | 16, 47, 70, 83, 119 |
| BccI | CCATC | 3 cut(s) | 188, 592, 617 |
| BceAI | ACGGC | 1 cut(s) | 131 |
| BcoDI | GTCTC | 1 cut(s) | 388 |
| BfaI | CTAG | 2 cut(s) | 203, 434 |
| BglI | GCCNNNNNGGC | 1 cut(s) | 284 |
| BisI | GCNGC | 5 cut(s) | 5, 36, 72, 84, 108 |
| BlsI | GCNGC | 5 cut(s) | 6, 37, 73, 85, 109 |
| Bme18I | GGWCC | 1 cut(s) | 115 |
| BmeT110I | CYCGRG | 1 cut(s) | 215 |
| BmgBI | CACGTC | 4 cut(s) | 54, 102, 122, 232 |
| BmgT120I | GGNCC | 2 cut(s) | 18, 115 |
| BmiI | GGNNCC | 1 cut(s) | 117 |
| BmsI | GCATC | 5 cut(s) | 47, 49, 71, 95, 190 |
| BpiI | GAAGAC | 2 cut(s) | 369, 572 |
| BpuEI | CTTGAG | 1 cut(s) | 170 |
| Bsa29I | ATCGAT | 1 cut(s) | 621 |
| BsaI | GGTCTC | 1 cut(s) | 388 |
| BsaJI | CCNNGG | 1 cut(s) | 27 |
| BsaWI | WCCGGW | 1 cut(s) | 112 |
| Bsc4I | CCNNNNNNNGG | 1 cut(s) | 15 |
| Bse1I | ACTGG | 1 cut(s) | 134 |
| BseCI | ATCGAT | 1 cut(s) | 621 |
| BseDI | CCNNGG | 1 cut(s) | 27 |
| BseGI | GGATG | 2 cut(s) | 306, 334 |
| BseLI | CCNNNNNNNGG | 1 cut(s) | 15 |
| BseNI | ACTGG | 1 cut(s) | 134 |
| BseRI | GAGGAG | 1 cut(s) | 446 |
| BseXI | GCAGC | 5 cut(s) | 16, 47, 70, 83, 119 |
| BshFI | GGCC | 2 cut(s) | 19, 191 |
| BshVI | ATCGAT | 1 cut(s) | 621 |
| BsiHKCI | CYCGRG | 1 cut(s) | 215 |
| BsiSI | CCGG | 1 cut(s) | 113 |
| BslFI | GGGAC | 1 cut(s) | 101 |
| BslI | CCNNNNNNNGG | 1 cut(s) | 15 |
| BsmAI | GTCTC | 1 cut(s) | 388 |
| BsmFI | GGGAC | 1 cut(s) | 101 |
| BsnI | GGCC | 2 cut(s) | 19, 191 |
| Bso31I | GGTCTC | 1 cut(s) | 388 |
| BsoBI | CYCGRG | 1 cut(s) | 215 |
| Bsp143I | GATC | 1 cut(s) | 540 |
| Bsp19I | CCATGG | 1 cut(s) | 27 |
| BspACI | CCGC | 1 cut(s) | 144 |
| BspANI | GGCC | 2 cut(s) | 19, 191 |
| BspDI | ATCGAT | 1 cut(s) | 621 |
| BspLI | GGNNCC | 1 cut(s) | 117 |
| BspTNI | GGTCTC | 1 cut(s) | 388 |
| BsrI | ACTGG | 1 cut(s) | 134 |
| BssECI | CCNNGG | 1 cut(s) | 27 |
| BssMI | GATC | 1 cut(s) | 540 |
| BssT1I | CCWWGG | 1 cut(s) | 27 |
| Bst4CI | ACNGT | 1 cut(s) | 241 |
| Bst6I | CTCTTC | 1 cut(s) | 464 |
| BstC8I | GCNNGC | 2 cut(s) | 17, 249 |
| BstDEI | CTNAG | 3 cut(s) | 221, 280, 606 |
| BstDSI | CCRYGG | 1 cut(s) | 27 |
| BstF5I | GGATG | 2 cut(s) | 306, 334 |
| BstKTI | GATC | 1 cut(s) | 543 |
| BstMAI | GTCTC | 1 cut(s) | 388 |
| BstMBI | GATC | 1 cut(s) | 540 |
| BstMWI | GCNNNNNNNGC | 7 cut(s) | 32, 44, 68, 80, 104, 284, 293 |
| BstV1I | GCAGC | 5 cut(s) | 16, 47, 70, 83, 119 |
| BstV2I | GAAGAC | 2 cut(s) | 369, 572 |
| BstXI | CCANNNNNNTGG | 1 cut(s) | 28 |
| Bsu15I | ATCGAT | 1 cut(s) | 621 |
| BsuRI | GGCC | 2 cut(s) | 19, 191 |
| BsuTUI | ATCGAT | 1 cut(s) | 621 |
| BtgI | CCRYGG | 1 cut(s) | 27 |
| BtgZI | GCGATG | 1 cut(s) | 566 |
| BtrI | CACGTC | 4 cut(s) | 54, 102, 122, 232 |
| BtsCI | GGATG | 2 cut(s) | 306, 334 |
| BtsI | GCAGTG | 1 cut(s) | 21 |
| BtsIMutI | CAGTG | 2 cut(s) | 21, 127 |
| Cac8I | GCNNGC | 2 cut(s) | 17, 249 |
| Cfr13I | GGNCC | 2 cut(s) | 18, 115 |
| ClaI | ATCGAT | 1 cut(s) | 621 |
| Csp6I | GTAC | 1 cut(s) | 627 |
| CviAII | CATG | 2 cut(s) | 28, 633 |
| CviQI | GTAC | 1 cut(s) | 627 |
| DdeI | CTNAG | 3 cut(s) | 221, 280, 606 |
| DpnI | GATC | 1 cut(s) | 542 |
| DpnII | GATC | 1 cut(s) | 540 |
| Eam1104I | CTCTTC | 1 cut(s) | 464 |
| EarI | CTCTTC | 1 cut(s) | 464 |
| Eco130I | CCWWGG | 1 cut(s) | 27 |
| Eco31I | GGTCTC | 1 cut(s) | 388 |
| Eco47I | GGWCC | 1 cut(s) | 115 |
| Eco88I | CYCGRG | 1 cut(s) | 215 |
| EcoRI | GAATTC | 1 cut(s) | 524 |
| EcoT14I | CCWWGG | 1 cut(s) | 27 |
| EcoT22I | ATGCAT | 1 cut(s) | 64 |
| ErhI | CCWWGG | 1 cut(s) | 27 |
| FaeI | CATG | 2 cut(s) | 31, 636 |
| FaiI | YATR | 9 cut(s) | 29, 324, 326, 345, 353, 450, 547, 549, 634 |
| FaqI | GGGAC | 1 cut(s) | 101 |
| FatI | CATG | 2 cut(s) | 27, 632 |
| FauNDI | CATATG | 2 cut(s) | 324, 547 |
| Fnu4HI | GCNGC | 5 cut(s) | 5, 36, 72, 84, 108 |
| FokI | GGATG | 2 cut(s) | 293, 341 |
| Fsp4HI | GCNGC | 5 cut(s) | 5, 36, 72, 84, 108 |
| FspBI | CTAG | 2 cut(s) | 203, 434 |
| GluI | GCNGC | 5 cut(s) | 5, 36, 72, 84, 108 |
| HaeIII | GGCC | 2 cut(s) | 19, 191 |
| HapII | CCGG | 1 cut(s) | 113 |
| Hin1II | CATG | 2 cut(s) | 31, 636 |
| HincII | GTYRAC | 1 cut(s) | 93 |
| HindII | GTYRAC | 1 cut(s) | 93 |
| HinfI | GANTC | 5 cut(s) | 198, 316, 416, 568, 618 |
| HpaII | CCGG | 1 cut(s) | 113 |
| HphI | GGTGA | 1 cut(s) | 133 |
| Hpy166II | GTNNAC | 2 cut(s) | 93, 175 |
| Hpy188I | TCNGA | 2 cut(s) | 58, 496 |
| Hpy188III | TCNNGA | 4 cut(s) | 215, 227, 428, 482 |
| Hpy8I | GTNNAC | 2 cut(s) | 93, 175 |
| HpyAV | CCTTC | 2 cut(s) | 366, 589 |
| HpyCH4III | ACNGT | 1 cut(s) | 241 |
| HpyCH4IV | ACGT | 5 cut(s) | 53, 101, 121, 231, 408 |
| HpyCH4V | TGCA | 4 cut(s) | 4, 62, 86, 593 |
| HpyF10VI | GCNNNNNNNGC | 7 cut(s) | 32, 44, 68, 80, 104, 284, 293 |
| HpyF3I | CTNAG | 3 cut(s) | 221, 280, 606 |
| HpySE526I | ACGT | 5 cut(s) | 53, 101, 121, 231, 408 |
| Hsp92II | CATG | 2 cut(s) | 31, 636 |
| Kzo9I | GATC | 1 cut(s) | 540 |
| LmnI | GCTCC | 2 cut(s) | 115, 342 |
| LpnPI | CCDG | 9 cut(s) | 22, 115, 126, 146, 191, 212, 382, 434, 441 |
| Lsp1109I | GCAGC | 5 cut(s) | 16, 47, 70, 83, 119 |
| LweI | GCATC | 5 cut(s) | 47, 49, 71, 95, 190 |
| MaeI | CTAG | 2 cut(s) | 203, 434 |
| MaeII | ACGT | 5 cut(s) | 53, 101, 121, 231, 408 |
| MaeIII | GTNAC | 3 cut(s) | 139, 404, 413 |
| MalI | GATC | 1 cut(s) | 542 |
| MboI | GATC | 1 cut(s) | 540 |
| MboII | GAAGA | 5 cut(s) | 371, 374, 404, 451, 577 |
| MluCI | AATT | 2 cut(s) | 210, 524 |
| MlyI | GAGTC | 3 cut(s) | 310, 410, 562 |
| MnlI | CCTC | 3 cut(s) | 277, 464, 467 |
| Mph1103I | ATGCAT | 1 cut(s) | 64 |
| MroXI | GAANNNNTTC | 1 cut(s) | 501 |
| MseI | TTAA | 1 cut(s) | 518 |
| MslI | CAYNNNNRTG | 4 cut(s) | 26, 146, 311, 327 |
| MspA1I | CMGCKG | 1 cut(s) | 83 |
| MspI | CCGG | 1 cut(s) | 113 |
| MwoI | GCNNNNNNNGC | 7 cut(s) | 32, 44, 68, 80, 104, 284, 293 |
| NcoI | CCATGG | 1 cut(s) | 27 |
| NdeI | CATATG | 2 cut(s) | 324, 547 |
| NdeII | GATC | 1 cut(s) | 540 |
| NlaIII | CATG | 2 cut(s) | 31, 636 |
| NlaIV | GGNNCC | 1 cut(s) | 117 |
| NmuCI | GTSAC | 2 cut(s) | 139, 413 |
| NsiI | ATGCAT | 1 cut(s) | 64 |
| OliI | CACNNNNGTG | 1 cut(s) | 146 |
| PaeR7I | CTCGAG | 1 cut(s) | 215 |
| PdmI | GAANNNNTTC | 1 cut(s) | 501 |
| PfeI | GAWTC | 2 cut(s) | 198, 618 |
| PkrI | GCNGC | 5 cut(s) | 6, 37, 73, 85, 109 |
| PleI | GAGTC | 3 cut(s) | 310, 410, 562 |
| PpsI | GAGTC | 3 cut(s) | 310, 410, 562 |
| PspN4I | GGNNCC | 1 cut(s) | 117 |
| PspPI | GGNCC | 2 cut(s) | 18, 115 |
| PvuII | CAGCTG | 1 cut(s) | 83 |
| RsaI | GTAC | 1 cut(s) | 628 |
| RsaNI | GTAC | 1 cut(s) | 627 |
| RseI | CAYNNNNRTG | 4 cut(s) | 26, 146, 311, 327 |
| SaqAI | TTAA | 1 cut(s) | 518 |
| SatI | GCNGC | 5 cut(s) | 5, 36, 72, 84, 108 |
| Sau3AI | GATC | 1 cut(s) | 540 |
| Sau96I | GGNCC | 2 cut(s) | 18, 115 |
| SchI | GAGTC | 3 cut(s) | 310, 410, 562 |
| SfaNI | GCATC | 5 cut(s) | 47, 49, 71, 95, 190 |
| Sfr274I | CTCGAG | 1 cut(s) | 215 |
| SinI | GGWCC | 1 cut(s) | 115 |
| SlaI | CTCGAG | 1 cut(s) | 215 |
| SmiMI | CAYNNNNRTG | 4 cut(s) | 26, 146, 311, 327 |
| SmlI | CTYRAG | 2 cut(s) | 185, 215 |
| SmoI | CTYRAG | 2 cut(s) | 185, 215 |
| Sse9I | AATT | 2 cut(s) | 210, 524 |
| SsiI | CCGC | 1 cut(s) | 144 |
| SspMI | CTAG | 2 cut(s) | 203, 434 |
| StyI | CCWWGG | 1 cut(s) | 27 |
| TaaI | ACNGT | 1 cut(s) | 241 |
| TaiI | ACGT | 5 cut(s) | 56, 104, 124, 234, 411 |
| TaqI | TCGA | 4 cut(s) | 216, 390, 616, 621 |
| TasI | AATT | 2 cut(s) | 210, 524 |
| TfiI | GAWTC | 2 cut(s) | 198, 618 |
| Tru1I | TTAA | 1 cut(s) | 518 |
| Tru9I | TTAA | 1 cut(s) | 518 |
| TscAI | CASTG | 2 cut(s) | 28, 134 |
| TseFI | GTSAC | 2 cut(s) | 139, 413 |
| TseI | GCWGC | 5 cut(s) | 4, 35, 71, 83, 107 |
| Tsp45I | GTSAC | 2 cut(s) | 139, 413 |
| TspDTI | ATGAA | 1 cut(s) | 372 |
| TspGWI | ACGGA | 1 cut(s) | 401 |
| TspRI | CASTG | 2 cut(s) | 28, 134 |
| VpaK11BI | GGWCC | 1 cut(s) | 115 |
| XapI | RAATTY | 2 cut(s) | 210, 524 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 126 |
| XhoI | CTCGAG | 1 cut(s) | 215 |
| XmnI | GAANNNNTTC | 1 cut(s) | 501 |
| XspI | CTAG | 2 cut(s) | 203, 434 |
| Zsp2I | ATGCAT | 1 cut(s) | 64 |