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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AarI | CACCTGC | 1 cut(s) | 399 |
| Acc36I | ACCTGC | 1 cut(s) | 399 |
| AccB1I | GGYRCC | 1 cut(s) | 837 |
| AccII | CGCG | 1 cut(s) | 822 |
| AccIII | TCCGGA | 1 cut(s) | 444 |
| AciI | CCGC | 1 cut(s) | 106 |
| AclWI | GGATC | 1 cut(s) | 704 |
| AcoI | YGGCCR | 2 cut(s) | 125, 145 |
| AcsI | RAATTY | 2 cut(s) | 440, 581 |
| AcyI | GRCGYC | 1 cut(s) | 838 |
| AfiI | CCNNNNNNNGG | 2 cut(s) | 357, 444 |
| AgsI | TTSAA | 6 cut(s) | 8, 26, 46, 76, 500, 529 |
| AjiI | CACGTC | 1 cut(s) | 305 |
| AluBI | AGCT | 6 cut(s) | 14, 282, 298, 516, 715, 725 |
| AluI | AGCT | 6 cut(s) | 14, 282, 298, 516, 715, 725 |
| Alw21I | GWGCWC | 1 cut(s) | 798 |
| Alw26I | GTCTC | 1 cut(s) | 649 |
| AlwI | GGATC | 1 cut(s) | 704 |
| AlwNI | CAGNNNCTG | 1 cut(s) | 298 |
| Aor13HI | TCCGGA | 1 cut(s) | 444 |
| AoxI | GGCC | 3 cut(s) | 107, 125, 145 |
| ApeKI | GCWGC | 3 cut(s) | 171, 295, 298 |
| ApoI | RAATTY | 2 cut(s) | 440, 581 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 558 |
| AspLEI | GCGC | 2 cut(s) | 824, 840 |
| AspS9I | GGNCC | 3 cut(s) | 108, 340, 360 |
| AsuHPI | GGTGA | 1 cut(s) | 380 |
| AvaII | GGWCC | 2 cut(s) | 340, 360 |
| BanI | GGYRCC | 1 cut(s) | 837 |
| BbsI | GAAGAC | 1 cut(s) | 629 |
| Bbv12I | GWGCWC | 1 cut(s) | 798 |
| BbvI | GCAGC | 3 cut(s) | 183, 285, 307 |
| BccI | CCATC | 2 cut(s) | 353, 649 |
| BcgI | CGANNNNNNTGC | 2 cut(s) | 668, 702 |
| BcoDI | GTCTC | 1 cut(s) | 649 |
| BfaI | CTAG | 1 cut(s) | 314 |
| BfmI | CTRYAG | 1 cut(s) | 687 |
| BfoI | RGCGCY | 1 cut(s) | 841 |
| BfuAI | ACCTGC | 1 cut(s) | 399 |
| BglII | AGATCT | 1 cut(s) | 779 |
| BisI | GCNGC | 4 cut(s) | 107, 172, 296, 299 |
| BlsI | GCNGC | 4 cut(s) | 108, 173, 297, 300 |
| Bme18I | GGWCC | 2 cut(s) | 340, 360 |
| BmgBI | CACGTC | 1 cut(s) | 305 |
| BmgT120I | GGNCC | 3 cut(s) | 108, 340, 360 |
| BmiI | GGNNCC | 4 cut(s) | 110, 342, 362, 839 |
| BmsI | GCATC | 3 cut(s) | 319, 412, 595 |
| BpiI | GAAGAC | 1 cut(s) | 629 |
| Bpu10I | CCTNAGC | 1 cut(s) | 512 |
| Bsa29I | ATCGAT | 1 cut(s) | 678 |
| BsaHI | GRCGYC | 1 cut(s) | 838 |
| BsaJI | CCNNGG | 1 cut(s) | 586 |
| BsaWI | WCCGGW | 4 cut(s) | 337, 357, 406, 444 |
| Bsc4I | CCNNNNNNNGG | 2 cut(s) | 357, 444 |
| Bse118I | RCCGGY | 2 cut(s) | 123, 143 |
| BseAI | TCCGGA | 1 cut(s) | 444 |
| BseCI | ATCGAT | 1 cut(s) | 678 |
| BseDI | CCNNGG | 1 cut(s) | 586 |
| BseGI | GGATG | 3 cut(s) | 403, 453, 753 |
| BseLI | CCNNNNNNNGG | 2 cut(s) | 357, 444 |
| BseX3I | CGGCCG | 1 cut(s) | 125 |
| BseXI | GCAGC | 3 cut(s) | 183, 285, 307 |
| BseYI | CCCAGC | 2 cut(s) | 238, 264 |
| Bsh1236I | CGCG | 1 cut(s) | 822 |
| Bsh1285I | CGRYCG | 2 cut(s) | 128, 673 |
| BshFI | GGCC | 3 cut(s) | 109, 127, 147 |
| BshNI | GGYRCC | 1 cut(s) | 837 |
| BshVI | ATCGAT | 1 cut(s) | 678 |
| BsiEI | CGRYCG | 2 cut(s) | 128, 673 |
| BsiHKAI | GWGCWC | 1 cut(s) | 798 |
| BsiSI | CCGG | 6 cut(s) | 124, 144, 338, 358, 407, 445 |
| BslI | CCNNNNNNNGG | 2 cut(s) | 357, 444 |
| BsmAI | GTCTC | 1 cut(s) | 649 |
| BsmBI | CGTCTC | 1 cut(s) | 649 |
| BsnI | GGCC | 3 cut(s) | 109, 127, 147 |
| Bsp1286I | GDGCHC | 1 cut(s) | 798 |
| Bsp13I | TCCGGA | 1 cut(s) | 444 |
| Bsp143I | GATC | 4 cut(s) | 597, 670, 696, 779 |
| BspACI | CCGC | 1 cut(s) | 106 |
| BspANI | GGCC | 3 cut(s) | 109, 127, 147 |
| BspDI | ATCGAT | 1 cut(s) | 678 |
| BspEI | TCCGGA | 1 cut(s) | 444 |
| BspFNI | CGCG | 1 cut(s) | 822 |
| BspHI | TCATGA | 1 cut(s) | 709 |
| BspLI | GGNNCC | 4 cut(s) | 110, 342, 362, 839 |
| BspMAI | CTGCAG | 1 cut(s) | 691 |
| BspMI | ACCTGC | 1 cut(s) | 399 |
| BspPI | GGATC | 1 cut(s) | 704 |
| BspT107I | GGYRCC | 1 cut(s) | 837 |
| BsrFI | RCCGGY | 2 cut(s) | 123, 143 |
| BssAI | RCCGGY | 2 cut(s) | 123, 143 |
| BssECI | CCNNGG | 1 cut(s) | 586 |
| BssMI | GATC | 4 cut(s) | 597, 670, 696, 779 |
| BssNI | GRCGYC | 1 cut(s) | 838 |
| Bst4CI | ACNGT | 1 cut(s) | 152 |
| BstACI | GRCGYC | 1 cut(s) | 838 |
| BstC8I | GCNNGC | 2 cut(s) | 284, 352 |
| BstDEI | CTNAG | 3 cut(s) | 512, 663, 828 |
| BstDSI | CCRYGG | 1 cut(s) | 586 |
| BstF5I | GGATG | 3 cut(s) | 403, 453, 753 |
| BstFNI | CGCG | 1 cut(s) | 822 |
| BstH2I | RGCGCY | 1 cut(s) | 841 |
| BstHHI | GCGC | 2 cut(s) | 824, 840 |
| BstKTI | GATC | 4 cut(s) | 600, 673, 699, 782 |
| BstMAI | GTCTC | 1 cut(s) | 649 |
| BstMBI | GATC | 4 cut(s) | 597, 670, 696, 779 |
| BstMCI | CGRYCG | 2 cut(s) | 128, 673 |
| BstMWI | GCNNNNNNNGC | 4 cut(s) | 292, 307, 376, 400 |
| BstSFI | CTRYAG | 1 cut(s) | 687 |
| BstUI | CGCG | 1 cut(s) | 822 |
| BstV1I | GCAGC | 3 cut(s) | 183, 285, 307 |
| BstV2I | GAAGAC | 1 cut(s) | 629 |
| BstX2I | RGATCY | 1 cut(s) | 779 |
| BstXI | CCANNNNNNTGG | 1 cut(s) | 422 |
| BstYI | RGATCY | 1 cut(s) | 779 |
| BstZI | CGGCCG | 1 cut(s) | 125 |
| Bsu15I | ATCGAT | 1 cut(s) | 678 |
| BsuRI | GGCC | 3 cut(s) | 109, 127, 147 |
| BsuTUI | ATCGAT | 1 cut(s) | 678 |
| BtgI | CCRYGG | 1 cut(s) | 586 |
| BtgZI | GCGATG | 2 cut(s) | 331, 623 |
| BtrI | CACGTC | 1 cut(s) | 305 |
| BtsCI | GGATG | 3 cut(s) | 403, 453, 753 |
| BtsI | GCAGTG | 1 cut(s) | 320 |
| BtsIMutI | CAGTG | 3 cut(s) | 183, 270, 320 |
| BveI | ACCTGC | 1 cut(s) | 399 |
| Cac8I | GCNNGC | 2 cut(s) | 284, 352 |
| CaiI | CAGNNNCTG | 1 cut(s) | 298 |
| CciI | TCATGA | 1 cut(s) | 709 |
| CfoI | GCGC | 2 cut(s) | 824, 840 |
| Cfr10I | RCCGGY | 2 cut(s) | 123, 143 |
| Cfr13I | GGNCC | 3 cut(s) | 108, 340, 360 |
| ClaI | ATCGAT | 1 cut(s) | 678 |
| CviAII | CATG | 3 cut(s) | 327, 710, 746 |
| DdeI | CTNAG | 3 cut(s) | 512, 663, 828 |
| DinI | GGCGCC | 1 cut(s) | 839 |
| DpnI | GATC | 4 cut(s) | 599, 672, 698, 781 |
| DpnII | GATC | 4 cut(s) | 597, 670, 696, 779 |
| EaeI | YGGCCR | 2 cut(s) | 125, 145 |
| EagI | CGGCCG | 1 cut(s) | 125 |
| EclXI | CGGCCG | 1 cut(s) | 125 |
| Eco47I | GGWCC | 2 cut(s) | 340, 360 |
| Eco52I | CGGCCG | 1 cut(s) | 125 |
| EcoRI | GAATTC | 1 cut(s) | 581 |
| EgeI | GGCGCC | 1 cut(s) | 839 |
| EheI | GGCGCC | 1 cut(s) | 839 |
| Esp3I | CGTCTC | 1 cut(s) | 649 |
| FaeI | CATG | 3 cut(s) | 330, 713, 749 |
| FatI | CATG | 3 cut(s) | 326, 709, 745 |
| Fnu4HI | GCNGC | 4 cut(s) | 107, 172, 296, 299 |
| FokI | GGATG | 3 cut(s) | 390, 460, 740 |
| Fsp4HI | GCNGC | 4 cut(s) | 107, 172, 296, 299 |
| FspBI | CTAG | 1 cut(s) | 314 |
| GlaI | GCGC | 2 cut(s) | 823, 839 |
| GluI | GCNGC | 4 cut(s) | 107, 172, 296, 299 |
| GsaI | CCCAGC | 2 cut(s) | 242, 268 |
| HaeII | RGCGCY | 1 cut(s) | 841 |
| HaeIII | GGCC | 3 cut(s) | 109, 127, 147 |
| HapII | CCGG | 6 cut(s) | 124, 144, 338, 358, 407, 445 |
| HhaI | GCGC | 2 cut(s) | 824, 840 |
| Hin1I | GRCGYC | 1 cut(s) | 838 |
| Hin1II | CATG | 3 cut(s) | 330, 713, 749 |
| Hin6I | GCGC | 2 cut(s) | 822, 838 |
| HinP1I | GCGC | 2 cut(s) | 822, 838 |
| HincII | GTYRAC | 1 cut(s) | 412 |
| HindII | GTYRAC | 1 cut(s) | 412 |
| HindIII | AAGCTT | 1 cut(s) | 514 |
| HinfI | GANTC | 6 cut(s) | 4, 26, 317, 625, 675, 806 |
| HpaII | CCGG | 6 cut(s) | 124, 144, 338, 358, 407, 445 |
| HphI | GGTGA | 1 cut(s) | 380 |
| Hpy166II | GTNNAC | 2 cut(s) | 155, 412 |
| Hpy188I | TCNGA | 4 cut(s) | 31, 435, 553, 602 |
| Hpy188III | TCNNGA | 8 cut(s) | 8, 97, 314, 445, 539, 710, 777, 803 |
| Hpy8I | GTNNAC | 2 cut(s) | 155, 412 |
| HpyAV | CCTTC | 1 cut(s) | 646 |
| HpyCH4III | ACNGT | 1 cut(s) | 152 |
| HpyCH4IV | ACGT | 1 cut(s) | 304 |
| HpyCH4V | TGCA | 2 cut(s) | 650, 689 |
| HpyF10VI | GCNNNNNNNGC | 4 cut(s) | 292, 307, 376, 400 |
| HpyF3I | CTNAG | 3 cut(s) | 512, 663, 828 |
| HpySE526I | ACGT | 1 cut(s) | 304 |
| Hsp92I | GRCGYC | 1 cut(s) | 838 |
| Hsp92II | CATG | 3 cut(s) | 330, 713, 749 |
| HspAI | GCGC | 2 cut(s) | 822, 838 |
| KasI | GGCGCC | 1 cut(s) | 837 |
| Kpn2I | TCCGGA | 1 cut(s) | 444 |
| Kzo9I | GATC | 4 cut(s) | 597, 670, 696, 779 |
| LmnI | GCTCC | 2 cut(s) | 481, 722 |
| Lsp1109I | GCAGC | 3 cut(s) | 183, 285, 307 |
| LweI | GCATC | 3 cut(s) | 319, 412, 595 |
| MaeI | CTAG | 1 cut(s) | 314 |
| MaeII | ACGT | 1 cut(s) | 304 |
| MaeIII | GTNAC | 2 cut(s) | 452, 682 |
| MalI | GATC | 4 cut(s) | 599, 672, 698, 781 |
| MboI | GATC | 4 cut(s) | 597, 670, 696, 779 |
| MboII | GAAGA | 6 cut(s) | 88, 233, 236, 263, 634, 775 |
| MflI | RGATCY | 1 cut(s) | 779 |
| MhlI | GDGCHC | 1 cut(s) | 798 |
| MluCI | AATT | 5 cut(s) | 440, 464, 581, 772, 811 |
| Mly113I | GGCGCC | 1 cut(s) | 838 |
| MlyI | GAGTC | 1 cut(s) | 619 |
| MmeI | TCCRAC | 1 cut(s) | 458 |
| MnlI | CCTC | 4 cut(s) | 69, 75, 827, 835 |
| MroI | TCCGGA | 1 cut(s) | 444 |
| MroXI | GAANNNNTTC | 1 cut(s) | 558 |
| MseI | TTAA | 2 cut(s) | 567, 575 |
| MslI | CAYNNNNRTG | 2 cut(s) | 325, 758 |
| MspA1I | CMGCKG | 1 cut(s) | 298 |
| MspI | CCGG | 6 cut(s) | 124, 144, 338, 358, 407, 445 |
| MvnI | CGCG | 1 cut(s) | 822 |
| MwoI | GCNNNNNNNGC | 4 cut(s) | 292, 307, 376, 400 |
| NarI | GGCGCC | 1 cut(s) | 838 |
| NdeII | GATC | 4 cut(s) | 597, 670, 696, 779 |
| NlaIII | CATG | 3 cut(s) | 330, 713, 749 |
| NlaIV | GGNNCC | 4 cut(s) | 110, 342, 362, 839 |
| PagI | TCATGA | 1 cut(s) | 709 |
| PaqCI | CACCTGC | 1 cut(s) | 399 |
| PcsI | WCGNNNNNNNCGW | 1 cut(s) | 675 |
| PdmI | GAANNNNTTC | 1 cut(s) | 558 |
| PfeI | GAWTC | 5 cut(s) | 4, 26, 317, 675, 806 |
| PkrI | GCNGC | 4 cut(s) | 108, 173, 297, 300 |
| Ple19I | CGATCG | 1 cut(s) | 673 |
| PleI | GAGTC | 1 cut(s) | 619 |
| PluTI | GGCGCC | 1 cut(s) | 841 |
| PpsI | GAGTC | 1 cut(s) | 619 |
| PspFI | CCCAGC | 2 cut(s) | 238, 264 |
| PspN4I | GGNNCC | 4 cut(s) | 110, 342, 362, 839 |
| PspPI | GGNCC | 3 cut(s) | 108, 340, 360 |
| PstI | CTGCAG | 1 cut(s) | 691 |
| PstNI | CAGNNNCTG | 1 cut(s) | 298 |
| PsuI | RGATCY | 1 cut(s) | 779 |
| PvuI | CGATCG | 1 cut(s) | 673 |
| PvuII | CAGCTG | 1 cut(s) | 298 |
| RseI | CAYNNNNRTG | 2 cut(s) | 325, 758 |
| SaqAI | TTAA | 2 cut(s) | 567, 575 |
| SatI | GCNGC | 4 cut(s) | 107, 172, 296, 299 |
| Sau3AI | GATC | 4 cut(s) | 597, 670, 696, 779 |
| Sau96I | GGNCC | 3 cut(s) | 108, 340, 360 |
| SchI | GAGTC | 1 cut(s) | 619 |
| SduI | GDGCHC | 1 cut(s) | 798 |
| SfaNI | GCATC | 3 cut(s) | 319, 412, 595 |
| SfcI | CTRYAG | 1 cut(s) | 687 |
| SfoI | GGCGCC | 1 cut(s) | 839 |
| SinI | GGWCC | 2 cut(s) | 340, 360 |
| SmiMI | CAYNNNNRTG | 2 cut(s) | 325, 758 |
| Sse9I | AATT | 5 cut(s) | 440, 464, 581, 772, 811 |
| SsiI | CCGC | 1 cut(s) | 106 |
| SspDI | GGCGCC | 1 cut(s) | 837 |
| SspI | AATATT | 1 cut(s) | 179 |
| SspMI | CTAG | 1 cut(s) | 314 |
| TaaI | ACNGT | 1 cut(s) | 152 |
| TaiI | ACGT | 1 cut(s) | 307 |
| TaqI | TCGA | 3 cut(s) | 673, 678, 776 |
| TasI | AATT | 5 cut(s) | 440, 464, 581, 772, 811 |
| TauI | GCSGC | 1 cut(s) | 109 |
| TfiI | GAWTC | 5 cut(s) | 4, 26, 317, 675, 806 |
| Tru1I | TTAA | 2 cut(s) | 567, 575 |
| Tru9I | TTAA | 2 cut(s) | 567, 575 |
| TscAI | CASTG | 3 cut(s) | 190, 277, 327 |
| TseI | GCWGC | 3 cut(s) | 171, 295, 298 |
| TspDTI | ATGAA | 2 cut(s) | 698, 743 |
| TspGWI | ACGGA | 3 cut(s) | 575, 631, 709 |
| TspRI | CASTG | 3 cut(s) | 190, 277, 327 |
| VpaK11BI | GGWCC | 2 cut(s) | 340, 360 |
| XapI | RAATTY | 2 cut(s) | 440, 581 |
| XbaI | TCTAGA | 1 cut(s) | 313 |
| XmnI | GAANNNNTTC | 1 cut(s) | 558 |
| XspI | CTAG | 1 cut(s) | 314 |